Wall clock time and date at job start Mon Mar 30 2020 05:12:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.45815 * 2 1 4 4 C 1.53039 * 109.45896 * 240.02453 * 2 1 3 5 5 C 1.53123 * 109.31189 * 299.14178 * 4 2 1 6 6 O 1.42896 * 109.52132 * 182.46557 * 5 4 2 7 7 C 1.42901 * 113.99723 * 210.00239 * 6 5 4 8 8 C 1.50700 * 109.47452 * 179.97438 * 7 6 5 9 9 H 1.08006 * 119.99744 * 0.02562 * 8 7 6 10 10 C 1.37873 * 120.00272 * 179.97438 * 8 7 6 11 11 N 1.31508 * 120.00159 * 359.97438 * 10 8 7 12 12 Si 1.86799 * 119.99881 * 180.02562 * 10 8 7 13 13 H 1.48501 * 109.47460 * 359.97438 * 12 10 8 14 14 H 1.48504 * 109.47469 * 119.99955 * 12 10 8 15 15 H 1.48507 * 109.47028 * 240.00069 * 12 10 8 16 16 C 1.53129 * 109.15931 * 302.40768 * 5 4 2 17 17 C 1.53036 * 109.30712 * 57.59477 * 16 5 4 18 18 H 1.09002 * 109.45657 * 60.85248 * 17 16 5 19 19 C 1.53006 * 109.46167 * 180.82822 * 17 16 5 20 20 N 1.46842 * 109.46283 * 119.97418 * 2 1 3 21 21 C 1.46910 * 110.99703 * 294.17538 * 20 2 1 22 22 H 1.09003 * 109.47228 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.47473 * 299.97705 * 1 2 3 24 24 H 1.08997 * 109.47715 * 59.97734 * 1 2 3 25 25 H 1.09002 * 109.50563 * 59.10510 * 4 2 1 26 26 H 1.09003 * 109.50107 * 179.18492 * 4 2 1 27 27 H 1.09000 * 109.52057 * 62.27355 * 5 4 2 28 28 H 1.09003 * 109.46880 * 299.99804 * 7 6 5 29 29 H 1.08995 * 109.47629 * 59.99471 * 7 6 5 30 30 H 0.97003 * 120.00254 * 180.02562 * 11 10 8 31 31 H 1.09000 * 109.46579 * 297.65836 * 16 5 4 32 32 H 1.08997 * 109.53656 * 177.57437 * 16 5 4 33 33 H 1.08993 * 109.46913 * 180.02562 * 19 17 16 34 34 H 1.09000 * 109.46466 * 300.05540 * 19 17 16 35 35 H 1.08996 * 109.47097 * 60.05056 * 19 17 16 36 36 H 1.08993 * 109.46992 * 60.00241 * 21 20 2 37 37 H 1.08996 * 109.47228 * 180.02562 * 21 20 2 38 38 H 1.09000 * 109.46908 * 299.99999 * 21 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0398 -0.7210 -1.2500 5 6 1.5450 -2.1700 -1.2360 6 8 2.0658 -2.8633 -2.3718 7 6 1.2199 -3.9103 -2.8517 8 6 1.8634 -4.5692 -4.0445 9 1 2.8227 -4.2233 -4.4003 10 6 1.2280 -5.6143 -4.6810 11 7 0.0607 -6.0365 -4.2469 12 14 2.0261 -6.4314 -6.1591 13 1 3.3276 -5.7757 -6.4445 14 1 2.2495 -7.8705 -5.8686 15 1 1.1353 -6.2972 -7.3398 16 6 2.0269 -2.8533 0.0469 17 6 1.5173 -2.0705 1.2591 18 1 0.4274 -2.0607 1.2531 19 6 2.0141 -2.7385 2.5429 20 7 2.0193 -0.6917 1.1993 21 6 1.6651 0.0507 2.4165 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3634 0.5135 0.8902 24 1 -0.3634 0.5141 -0.8897 25 1 1.6637 -0.2165 -2.1400 26 1 3.1298 -0.7087 -1.2580 27 1 0.4556 -2.1831 -1.2680 28 1 1.0731 -4.6488 -2.0635 29 1 0.2558 -3.4938 -3.1433 30 1 -0.3861 -6.7720 -4.6944 31 1 3.1166 -2.8750 0.0595 32 1 1.6420 -3.8723 0.0837 33 1 1.6509 -2.1814 3.4063 34 1 1.6416 -3.7620 2.5873 35 1 3.1040 -2.7480 2.5492 36 1 0.5811 0.1423 2.4837 37 1 2.0397 -0.4833 3.2898 38 1 2.1121 1.0441 2.3792 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000710007232.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:12:01 Heat of formation + Delta-G solvation = -75.031003 kcal Electronic energy + Delta-G solvation = -16635.268090 eV Core-core repulsion = 14090.445295 eV Total energy + Delta-G solvation = -2544.822795 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.03212 -38.31430 -35.06321 -34.27251 -33.32148 -29.79077 -28.81055 -27.63760 -26.64900 -24.62702 -23.28482 -22.18072 -19.69710 -18.63903 -17.56408 -16.92851 -16.69544 -16.38843 -16.12456 -15.19656 -15.06352 -14.81995 -14.57505 -14.07505 -13.52721 -13.33640 -13.23726 -13.05652 -12.92048 -12.82041 -12.73359 -12.54704 -12.40102 -12.16198 -11.90978 -11.80768 -11.64638 -11.22530 -11.09959 -10.82776 -10.14203 -9.19287 -8.34456 -6.47372 1.38651 1.40295 1.55241 2.33198 2.93250 2.99110 3.09929 3.74631 3.80102 3.97010 4.08979 4.21043 4.31338 4.38899 4.41304 4.53310 4.57833 4.66008 4.75279 4.80652 4.85493 4.91509 4.94609 5.00604 5.07475 5.10419 5.12326 5.15467 5.26775 5.30203 5.42861 5.54452 5.94365 6.15664 6.23272 6.52761 6.81470 7.25171 8.78181 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.047317 B = 0.005739 C = 0.005510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 591.607253 B = 4877.890962 C = 5080.876376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.091 3.909 3 H 0.107 0.893 4 C -0.102 4.102 5 C 0.078 3.922 6 O -0.405 6.405 7 C 0.214 3.786 8 C -0.550 4.550 9 H 0.061 0.939 10 C 0.007 3.993 11 N -0.931 5.931 12 Si 0.985 3.015 13 H -0.264 1.264 14 H -0.270 1.270 15 H -0.270 1.270 16 C -0.125 4.125 17 C 0.086 3.914 18 H 0.041 0.959 19 C -0.142 4.142 20 N -0.541 5.541 21 C 0.017 3.983 22 H 0.043 0.957 23 H 0.074 0.926 24 H 0.067 0.933 25 H 0.069 0.931 26 H 0.069 0.931 27 H 0.040 0.960 28 H -0.016 1.016 29 H -0.018 1.018 30 H 0.271 0.729 31 H 0.065 0.935 32 H 0.047 0.953 33 H 0.078 0.922 34 H 0.059 0.941 35 H 0.061 0.939 36 H 0.032 0.968 37 H 0.081 0.919 38 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.326 11.456 12.918 17.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.018 4.018 3 H 0.125 0.875 4 C -0.140 4.140 5 C 0.020 3.980 6 O -0.325 6.325 7 C 0.139 3.861 8 C -0.587 4.587 9 H 0.079 0.921 10 C -0.192 4.192 11 N -0.570 5.570 12 Si 0.807 3.193 13 H -0.188 1.188 14 H -0.195 1.195 15 H -0.195 1.195 16 C -0.164 4.164 17 C -0.022 4.022 18 H 0.059 0.941 19 C -0.199 4.199 20 N -0.266 5.266 21 C -0.130 4.130 22 H 0.062 0.938 23 H 0.093 0.907 24 H 0.086 0.914 25 H 0.088 0.912 26 H 0.087 0.913 27 H 0.058 0.942 28 H 0.002 0.998 29 H -0.001 1.001 30 H 0.080 0.920 31 H 0.084 0.916 32 H 0.066 0.934 33 H 0.097 0.903 34 H 0.078 0.922 35 H 0.080 0.920 36 H 0.051 0.949 37 H 0.100 0.900 38 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 1.880 11.358 12.791 17.209 hybrid contribution -1.134 -0.823 -0.700 1.566 sum 0.747 10.535 12.090 16.054 Atomic orbital electron populations 1.22496 0.97196 1.01714 1.03213 1.21633 0.93045 0.98271 0.88805 0.87491 1.21626 1.01706 0.92554 0.98089 1.22257 0.96359 0.93241 0.86126 1.87841 1.48143 1.49819 1.46709 1.19800 0.88960 0.84387 0.92996 1.21431 1.06389 1.17232 1.13681 0.92081 1.25979 0.95370 0.96741 1.01069 1.70076 1.16269 1.28100 1.42562 0.85118 0.78606 0.78049 0.77520 1.18830 1.19524 1.19500 1.22039 1.01696 0.98337 0.94302 1.21519 0.96840 0.88807 0.95081 0.94103 1.21891 1.02062 1.00260 0.95704 1.62168 1.59746 1.01611 1.03076 1.22549 0.99275 0.99150 0.92000 0.93848 0.90675 0.91447 0.91189 0.91260 0.94196 0.99844 1.00077 0.91988 0.91576 0.93384 0.90347 0.92224 0.91956 0.94938 0.90030 0.90203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.35 8.18 71.98 0.59 -3.76 16 2 C 0.09 2.23 2.93 44.94 0.13 2.36 16 3 H 0.11 2.17 8.12 -2.39 -0.02 2.16 16 4 C -0.10 -3.28 5.26 30.65 0.16 -3.12 16 5 C 0.08 3.14 2.37 30.68 0.07 3.21 16 6 O -0.41 -20.98 9.98 -148.98 -1.49 -22.47 16 7 C 0.21 12.51 5.51 71.24 0.39 12.91 16 8 C -0.55 -33.78 9.43 25.60 0.24 -33.54 16 9 H 0.06 3.73 7.81 -2.91 -0.02 3.70 16 10 C 0.01 0.40 5.46 84.65 0.46 0.87 16 11 N -0.93 -56.94 13.29 21.44 0.28 -56.66 16 12 Si 0.98 45.13 29.54 68.60 2.03 47.16 16 13 H -0.26 -11.78 7.11 99.48 0.71 -11.07 16 14 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 15 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 16 C -0.13 -4.50 5.00 30.65 0.15 -4.35 16 17 C 0.09 2.34 2.15 44.94 0.10 2.44 16 18 H 0.04 1.14 6.19 -2.39 -0.01 1.13 16 19 C -0.14 -3.14 8.77 71.98 0.63 -2.50 16 20 N -0.54 -13.14 4.69 -871.90 -4.09 -17.23 16 21 C 0.02 0.30 8.91 127.69 1.14 1.44 16 22 H 0.04 1.19 4.80 -2.39 -0.01 1.18 16 23 H 0.07 1.42 6.54 -2.39 -0.02 1.41 16 24 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 25 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 26 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 27 H 0.04 1.66 6.21 -2.39 -0.01 1.64 16 28 H -0.02 -0.99 7.97 -2.39 -0.02 -1.01 16 29 H -0.02 -1.13 8.09 -2.39 -0.02 -1.15 16 30 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 31 H 0.07 2.45 8.14 -2.39 -0.02 2.44 16 32 H 0.05 1.87 7.96 -2.39 -0.02 1.85 16 33 H 0.08 1.36 6.23 -2.39 -0.01 1.35 16 34 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 35 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 36 H 0.03 0.53 6.46 -2.39 -0.02 0.52 16 37 H 0.08 1.26 5.96 -2.39 -0.01 1.24 16 38 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 Total: -1.00 -67.56 290.44 1.81 -65.74 By element: Atomic # 1 Polarization: 6.50 SS G_CDS: 1.01 Total: 7.51 kcal Atomic # 6 Polarization: -28.13 SS G_CDS: 4.07 Total: -24.06 kcal Atomic # 7 Polarization: -70.08 SS G_CDS: -3.81 Total: -73.89 kcal Atomic # 8 Polarization: -20.98 SS G_CDS: -1.49 Total: -22.47 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.16 kcal Total: -67.56 1.81 -65.74 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710007232.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.287 kcal (2) G-P(sol) polarization free energy of solvation -67.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds