Wall clock time and date at job start Mon Mar 30 2020 05:12:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 H 1.08992 * 109.48902 * 2 1 4 4 C 1.53095 * 109.47963 * 120.03219 * 2 1 3 5 5 C 1.53180 * 109.15665 * 177.59222 * 4 2 1 6 6 C 1.50694 * 109.54680 * 62.97811 * 5 4 2 7 7 H 1.08004 * 119.99770 * 357.20289 * 6 5 4 8 8 C 1.37879 * 120.00173 * 177.21359 * 6 5 4 9 9 N 1.31514 * 119.99892 * 0.65215 * 8 6 5 10 10 Si 1.86801 * 120.00194 * 180.65717 * 8 6 5 11 11 H 1.48500 * 109.47069 * 59.99184 * 10 8 6 12 12 H 1.48493 * 109.47177 * 179.97438 * 10 8 6 13 13 H 1.48501 * 109.46868 * 299.99626 * 10 8 6 14 14 N 1.46904 * 109.53620 * 183.14901 * 5 4 2 15 15 C 1.46901 * 111.00282 * 299.94706 * 14 5 4 16 16 C 1.46896 * 110.99891 * 63.90553 * 14 5 4 17 17 C 1.53177 * 109.03906 * 303.01393 * 5 4 2 18 18 C 1.53088 * 109.15997 * 56.98265 * 17 5 4 19 19 H 1.08998 * 109.48355 * 182.40798 * 18 17 5 20 20 C 1.53007 * 109.48067 * 62.37556 * 18 17 5 21 21 O 1.42903 * 109.41885 * 302.39218 * 18 17 5 22 22 H 1.09002 * 109.46786 * 299.96883 * 1 2 3 23 23 H 1.08998 * 109.46891 * 59.97290 * 1 2 3 24 24 H 1.09000 * 109.46812 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.52168 * 297.49403 * 4 2 1 26 26 H 1.08999 * 109.52266 * 57.68445 * 4 2 1 27 27 H 0.96994 * 119.99782 * 180.02562 * 9 8 6 28 28 H 1.08999 * 109.46898 * 64.91944 * 15 14 5 29 29 H 1.08998 * 109.47049 * 184.91368 * 15 14 5 30 30 H 1.08994 * 109.46926 * 304.91704 * 15 14 5 31 31 H 1.09003 * 109.47538 * 59.99988 * 16 14 5 32 32 H 1.09004 * 109.47388 * 179.97438 * 16 14 5 33 33 H 1.09005 * 109.47442 * 299.99652 * 16 14 5 34 34 H 1.08997 * 109.52454 * 176.88855 * 17 5 4 35 35 H 1.09000 * 109.52265 * 297.07930 * 17 5 4 36 36 H 1.09000 * 109.46899 * 42.71624 * 20 18 17 37 37 H 1.09000 * 109.47135 * 162.71432 * 20 18 17 38 38 H 1.08996 * 109.47233 * 282.71614 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0406 -0.7224 1.2495 5 6 3.5712 -0.7709 1.2120 6 6 4.1213 0.6314 1.2539 7 1 3.4478 1.4758 1.2569 8 6 5.4843 0.8366 1.2883 9 7 6.3046 -0.1912 1.2716 10 14 6.1658 2.5745 1.3588 11 1 5.6699 3.2512 2.5841 12 1 7.6495 2.5235 1.3880 13 1 5.7194 3.3301 0.1610 14 7 4.0672 -1.5280 2.3691 15 6 3.6486 -0.8989 3.6288 16 6 3.6286 -2.9287 2.3089 17 6 4.0177 -1.4601 -0.0810 18 6 3.4307 -0.7093 -1.2791 19 1 3.7099 -1.2202 -2.2006 20 6 3.9761 0.7201 -1.3026 21 8 2.0066 -0.6742 -1.1664 22 1 -0.3633 0.5134 0.8903 23 1 -0.3633 0.5142 -0.8897 24 1 -0.3633 -1.0277 -0.0005 25 1 1.7150 -0.1844 2.1399 26 1 1.6443 -1.7375 1.2709 27 1 7.2634 -0.0468 1.2961 28 1 2.5628 -0.9436 3.7139 29 1 4.1008 -1.4284 4.4673 30 1 3.9713 0.1421 3.6397 31 1 4.0114 -3.3906 1.3988 32 1 4.0099 -3.4665 3.1769 33 1 2.5393 -2.9686 2.3061 34 1 5.1059 -1.4498 -0.1423 35 1 3.6614 -2.4902 -0.0865 36 1 5.0429 0.7056 -1.0796 37 1 3.8172 1.1534 -2.2901 38 1 3.4568 1.3194 -0.5549 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000710009558.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:12:17 Heat of formation + Delta-G solvation = -25.527440 kcal Electronic energy + Delta-G solvation = -18143.953450 eV Core-core repulsion = 15601.277290 eV Total energy + Delta-G solvation = -2542.676160 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.44266 -36.05187 -33.01125 -32.01259 -30.62506 -27.97718 -27.21195 -25.36026 -25.04886 -22.74314 -21.41291 -19.67581 -18.33276 -15.82534 -15.52131 -15.28519 -14.70307 -13.97021 -13.72779 -13.32101 -13.06477 -12.84660 -12.43449 -12.10068 -11.93120 -11.71212 -11.45518 -11.15613 -10.93801 -10.75275 -10.66437 -10.56158 -10.41610 -10.33594 -9.90446 -9.70000 -9.36776 -9.25704 -8.81963 -8.35778 -8.18162 -6.68734 -5.86069 -3.93785 3.30333 3.36248 3.39909 4.43450 4.66898 5.17420 5.52379 5.66200 5.79250 6.02045 6.03958 6.19134 6.21957 6.28023 6.32898 6.38846 6.41776 6.43397 6.50672 6.55871 6.58496 6.73085 6.88859 6.94781 6.95330 7.03108 7.14890 7.17671 7.40098 7.68493 7.72803 7.89102 8.17536 8.36449 8.58808 8.72933 9.07155 9.62766 11.13054 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.022826 B = 0.014945 C = 0.011865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1226.372760 B = 1873.082533 C = 2359.364218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.095 3.905 3 H 0.066 0.934 4 C -0.169 4.169 5 C 0.246 3.754 6 C -0.516 4.516 7 H 0.054 0.946 8 C 0.089 3.911 9 N -0.840 5.840 10 Si 0.866 3.134 11 H -0.279 1.279 12 H -0.288 1.288 13 H -0.276 1.276 14 N -0.497 5.497 15 C 0.045 3.955 16 C 0.021 3.979 17 C -0.129 4.129 18 C 0.102 3.898 19 H 0.074 0.926 20 C -0.166 4.166 21 O -0.394 6.394 22 H 0.061 0.939 23 H 0.053 0.947 24 H 0.052 0.948 25 H 0.055 0.945 26 H 0.043 0.957 27 H 0.256 0.744 28 H -0.002 1.002 29 H 0.035 0.965 30 H 0.075 0.925 31 H 0.059 0.941 32 H 0.042 0.958 33 H 0.004 0.996 34 H 0.102 0.898 35 H 0.027 0.973 36 H 0.070 0.930 37 H 0.013 0.987 38 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.583 -0.764 -0.818 5.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.037 3.963 3 H 0.084 0.916 4 C -0.208 4.208 5 C 0.158 3.842 6 C -0.554 4.554 7 H 0.072 0.928 8 C -0.118 4.118 9 N -0.474 5.474 10 Si 0.694 3.306 11 H -0.204 1.204 12 H -0.214 1.214 13 H -0.201 1.201 14 N -0.219 5.219 15 C -0.103 4.103 16 C -0.127 4.127 17 C -0.167 4.167 18 C 0.044 3.956 19 H 0.092 0.908 20 C -0.223 4.223 21 O -0.315 6.315 22 H 0.080 0.920 23 H 0.072 0.928 24 H 0.072 0.928 25 H 0.074 0.926 26 H 0.062 0.938 27 H 0.066 0.934 28 H 0.016 0.984 29 H 0.054 0.946 30 H 0.094 0.906 31 H 0.078 0.922 32 H 0.061 0.939 33 H 0.022 0.978 34 H 0.121 0.879 35 H 0.045 0.955 36 H 0.089 0.911 37 H 0.032 0.968 38 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -4.952 -0.920 -0.951 5.126 hybrid contribution -0.234 0.961 0.396 1.066 sum -5.186 0.041 -0.555 5.216 Atomic orbital electron populations 1.21791 0.95371 1.01660 1.01166 1.21883 0.92346 0.96525 0.85589 0.91580 1.22846 1.01839 0.98766 0.97368 1.18604 0.85671 0.93018 0.86892 1.20636 0.91343 0.90072 1.53368 0.92787 1.24797 0.97052 0.95267 0.94656 1.70004 1.02341 1.28543 1.46515 0.87106 0.78206 0.86588 0.78706 1.20445 1.21383 1.20111 1.62351 1.58383 0.99148 1.01973 1.22068 0.95176 1.01222 0.91866 1.22409 0.96136 0.93442 1.00760 1.22217 1.04055 0.95393 0.95035 1.21990 0.79434 0.96609 0.97545 0.90821 1.22699 1.03554 0.97211 0.98805 1.87752 1.22456 1.78022 1.43226 0.92042 0.92814 0.92848 0.92588 0.93814 0.93408 0.98396 0.94625 0.90644 0.92188 0.93908 0.97788 0.87938 0.95461 0.91063 0.96803 0.89074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.30 9.57 37.16 0.36 -1.95 16 2 C 0.09 1.87 2.85 -26.68 -0.08 1.80 16 3 H 0.07 1.38 5.13 -51.93 -0.27 1.11 16 4 C -0.17 -3.52 3.44 -26.59 -0.09 -3.61 16 5 C 0.25 5.63 0.07 -132.57 -0.01 5.62 16 6 C -0.52 -12.55 2.87 -34.44 -0.10 -12.65 16 7 H 0.05 1.34 6.27 -52.48 -0.33 1.01 16 8 C 0.09 2.22 3.61 -17.82 -0.06 2.16 16 9 N -0.84 -22.08 10.89 55.43 0.60 -21.48 16 10 Si 0.87 19.91 29.52 -169.99 -5.02 14.89 16 11 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 12 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 13 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 14 N -0.50 -11.42 3.99 -236.54 -0.94 -12.37 16 15 C 0.05 0.97 8.86 60.06 0.53 1.50 16 16 C 0.02 0.44 8.80 60.06 0.53 0.97 16 17 C -0.13 -2.95 4.15 -26.59 -0.11 -3.06 16 18 C 0.10 2.17 3.91 -26.68 -0.10 2.07 16 19 H 0.07 1.46 8.14 -51.93 -0.42 1.04 16 20 C -0.17 -3.57 7.80 37.16 0.29 -3.28 16 21 O -0.39 -8.36 10.24 -35.23 -0.36 -8.72 16 22 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 23 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 24 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 25 H 0.06 1.16 6.71 -51.93 -0.35 0.81 16 26 H 0.04 0.91 6.36 -51.93 -0.33 0.58 16 27 H 0.26 6.62 8.31 -40.82 -0.34 6.28 16 28 H 0.00 -0.05 6.66 -51.93 -0.35 -0.39 16 29 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.07 1.73 6.93 -51.93 -0.36 1.37 16 31 H 0.06 1.23 6.17 -51.93 -0.32 0.91 16 32 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.00 0.08 6.35 -51.93 -0.33 -0.25 16 34 H 0.10 2.60 6.22 -51.93 -0.32 2.28 16 35 H 0.03 0.61 6.18 -51.93 -0.32 0.29 16 36 H 0.07 1.65 6.35 -51.93 -0.33 1.32 16 37 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 38 H 0.09 2.05 3.37 -51.93 -0.17 1.88 16 LS Contribution 269.87 15.07 4.07 4.07 Total: -1.00 -25.96 269.87 -6.37 -32.33 By element: Atomic # 1 Polarization: 7.60 SS G_CDS: -5.87 Total: 1.72 kcal Atomic # 6 Polarization: -11.60 SS G_CDS: 1.15 Total: -10.44 kcal Atomic # 7 Polarization: -33.51 SS G_CDS: -0.34 Total: -33.85 kcal Atomic # 8 Polarization: -8.36 SS G_CDS: -0.36 Total: -8.72 kcal Atomic # 14 Polarization: 19.91 SS G_CDS: -5.02 Total: 14.89 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -25.96 -6.37 -32.33 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710009558.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.808 kcal (2) G-P(sol) polarization free energy of solvation -25.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds