Wall clock time and date at job start Mon Mar 30 2020 05:12:17
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53010 * 1
3 3 H 1.08992 * 109.48902 * 2 1
4 4 C 1.53095 * 109.47963 * 120.03219 * 2 1 3
5 5 C 1.53180 * 109.15665 * 177.59222 * 4 2 1
6 6 C 1.50694 * 109.54680 * 62.97811 * 5 4 2
7 7 H 1.08004 * 119.99770 * 357.20289 * 6 5 4
8 8 C 1.37879 * 120.00173 * 177.21359 * 6 5 4
9 9 N 1.31514 * 119.99892 * 0.65215 * 8 6 5
10 10 Si 1.86801 * 120.00194 * 180.65717 * 8 6 5
11 11 H 1.48500 * 109.47069 * 59.99184 * 10 8 6
12 12 H 1.48493 * 109.47177 * 179.97438 * 10 8 6
13 13 H 1.48501 * 109.46868 * 299.99626 * 10 8 6
14 14 N 1.46904 * 109.53620 * 183.14901 * 5 4 2
15 15 C 1.46901 * 111.00282 * 299.94706 * 14 5 4
16 16 C 1.46896 * 110.99891 * 63.90553 * 14 5 4
17 17 C 1.53177 * 109.03906 * 303.01393 * 5 4 2
18 18 C 1.53088 * 109.15997 * 56.98265 * 17 5 4
19 19 H 1.08998 * 109.48355 * 182.40798 * 18 17 5
20 20 C 1.53007 * 109.48067 * 62.37556 * 18 17 5
21 21 O 1.42903 * 109.41885 * 302.39218 * 18 17 5
22 22 H 1.09002 * 109.46786 * 299.96883 * 1 2 3
23 23 H 1.08998 * 109.46891 * 59.97290 * 1 2 3
24 24 H 1.09000 * 109.46812 * 179.97438 * 1 2 3
25 25 H 1.09000 * 109.52168 * 297.49403 * 4 2 1
26 26 H 1.08999 * 109.52266 * 57.68445 * 4 2 1
27 27 H 0.96994 * 119.99782 * 180.02562 * 9 8 6
28 28 H 1.08999 * 109.46898 * 64.91944 * 15 14 5
29 29 H 1.08998 * 109.47049 * 184.91368 * 15 14 5
30 30 H 1.08994 * 109.46926 * 304.91704 * 15 14 5
31 31 H 1.09003 * 109.47538 * 59.99988 * 16 14 5
32 32 H 1.09004 * 109.47388 * 179.97438 * 16 14 5
33 33 H 1.09005 * 109.47442 * 299.99652 * 16 14 5
34 34 H 1.08997 * 109.52454 * 176.88855 * 17 5 4
35 35 H 1.09000 * 109.52265 * 297.07930 * 17 5 4
36 36 H 1.09000 * 109.46899 * 42.71624 * 20 18 17
37 37 H 1.09000 * 109.47135 * 162.71432 * 20 18 17
38 38 H 1.08996 * 109.47233 * 282.71614 * 20 18 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 1 1.8937 1.0275 0.0000
4 6 2.0406 -0.7224 1.2495
5 6 3.5712 -0.7709 1.2120
6 6 4.1213 0.6314 1.2539
7 1 3.4478 1.4758 1.2569
8 6 5.4843 0.8366 1.2883
9 7 6.3046 -0.1912 1.2716
10 14 6.1658 2.5745 1.3588
11 1 5.6699 3.2512 2.5841
12 1 7.6495 2.5235 1.3880
13 1 5.7194 3.3301 0.1610
14 7 4.0672 -1.5280 2.3691
15 6 3.6486 -0.8989 3.6288
16 6 3.6286 -2.9287 2.3089
17 6 4.0177 -1.4601 -0.0810
18 6 3.4307 -0.7093 -1.2791
19 1 3.7099 -1.2202 -2.2006
20 6 3.9761 0.7201 -1.3026
21 8 2.0066 -0.6742 -1.1664
22 1 -0.3633 0.5134 0.8903
23 1 -0.3633 0.5142 -0.8897
24 1 -0.3633 -1.0277 -0.0005
25 1 1.7150 -0.1844 2.1399
26 1 1.6443 -1.7375 1.2709
27 1 7.2634 -0.0468 1.2961
28 1 2.5628 -0.9436 3.7139
29 1 4.1008 -1.4284 4.4673
30 1 3.9713 0.1421 3.6397
31 1 4.0114 -3.3906 1.3988
32 1 4.0099 -3.4665 3.1769
33 1 2.5393 -2.9686 2.3061
34 1 5.1059 -1.4498 -0.1423
35 1 3.6614 -2.4902 -0.0865
36 1 5.0429 0.7056 -1.0796
37 1 3.8172 1.1534 -2.2901
38 1 3.4568 1.3194 -0.5549
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000710009558.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:12:17
Heat of formation + Delta-G solvation = -25.527440 kcal
Electronic energy + Delta-G solvation = -18143.953450 eV
Core-core repulsion = 15601.277290 eV
Total energy + Delta-G solvation = -2542.676160 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 227.163 amu
Computer time = 0.37 seconds
Orbital eigenvalues (eV)
-39.44266 -36.05187 -33.01125 -32.01259 -30.62506 -27.97718 -27.21195 -25.36026
-25.04886 -22.74314 -21.41291 -19.67581 -18.33276 -15.82534 -15.52131 -15.28519
-14.70307 -13.97021 -13.72779 -13.32101 -13.06477 -12.84660 -12.43449 -12.10068
-11.93120 -11.71212 -11.45518 -11.15613 -10.93801 -10.75275 -10.66437 -10.56158
-10.41610 -10.33594 -9.90446 -9.70000 -9.36776 -9.25704 -8.81963 -8.35778
-8.18162 -6.68734 -5.86069 -3.93785 3.30333 3.36248 3.39909 4.43450
4.66898 5.17420 5.52379 5.66200 5.79250 6.02045 6.03958 6.19134
6.21957 6.28023 6.32898 6.38846 6.41776 6.43397 6.50672 6.55871
6.58496 6.73085 6.88859 6.94781 6.95330 7.03108 7.14890 7.17671
7.40098 7.68493 7.72803 7.89102 8.17536 8.36449 8.58808 8.72933
9.07155 9.62766 11.13054
Molecular weight = 227.16amu
Principal moments of inertia in cm(-1)
A = 0.022826 B = 0.014945 C = 0.011865
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1226.372760 B = 1873.082533 C = 2359.364218
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.142 4.142
2 C 0.095 3.905
3 H 0.066 0.934
4 C -0.169 4.169
5 C 0.246 3.754
6 C -0.516 4.516
7 H 0.054 0.946
8 C 0.089 3.911
9 N -0.840 5.840
10 Si 0.866 3.134
11 H -0.279 1.279
12 H -0.288 1.288
13 H -0.276 1.276
14 N -0.497 5.497
15 C 0.045 3.955
16 C 0.021 3.979
17 C -0.129 4.129
18 C 0.102 3.898
19 H 0.074 0.926
20 C -0.166 4.166
21 O -0.394 6.394
22 H 0.061 0.939
23 H 0.053 0.947
24 H 0.052 0.948
25 H 0.055 0.945
26 H 0.043 0.957
27 H 0.256 0.744
28 H -0.002 1.002
29 H 0.035 0.965
30 H 0.075 0.925
31 H 0.059 0.941
32 H 0.042 0.958
33 H 0.004 0.996
34 H 0.102 0.898
35 H 0.027 0.973
36 H 0.070 0.930
37 H 0.013 0.987
38 H 0.091 0.909
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.583 -0.764 -0.818 5.694
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.200 4.200
2 C 0.037 3.963
3 H 0.084 0.916
4 C -0.208 4.208
5 C 0.158 3.842
6 C -0.554 4.554
7 H 0.072 0.928
8 C -0.118 4.118
9 N -0.474 5.474
10 Si 0.694 3.306
11 H -0.204 1.204
12 H -0.214 1.214
13 H -0.201 1.201
14 N -0.219 5.219
15 C -0.103 4.103
16 C -0.127 4.127
17 C -0.167 4.167
18 C 0.044 3.956
19 H 0.092 0.908
20 C -0.223 4.223
21 O -0.315 6.315
22 H 0.080 0.920
23 H 0.072 0.928
24 H 0.072 0.928
25 H 0.074 0.926
26 H 0.062 0.938
27 H 0.066 0.934
28 H 0.016 0.984
29 H 0.054 0.946
30 H 0.094 0.906
31 H 0.078 0.922
32 H 0.061 0.939
33 H 0.022 0.978
34 H 0.121 0.879
35 H 0.045 0.955
36 H 0.089 0.911
37 H 0.032 0.968
38 H 0.109 0.891
Dipole moment (debyes) X Y Z Total
from point charges -4.952 -0.920 -0.951 5.126
hybrid contribution -0.234 0.961 0.396 1.066
sum -5.186 0.041 -0.555 5.216
Atomic orbital electron populations
1.21791 0.95371 1.01660 1.01166 1.21883 0.92346 0.96525 0.85589
0.91580 1.22846 1.01839 0.98766 0.97368 1.18604 0.85671 0.93018
0.86892 1.20636 0.91343 0.90072 1.53368 0.92787 1.24797 0.97052
0.95267 0.94656 1.70004 1.02341 1.28543 1.46515 0.87106 0.78206
0.86588 0.78706 1.20445 1.21383 1.20111 1.62351 1.58383 0.99148
1.01973 1.22068 0.95176 1.01222 0.91866 1.22409 0.96136 0.93442
1.00760 1.22217 1.04055 0.95393 0.95035 1.21990 0.79434 0.96609
0.97545 0.90821 1.22699 1.03554 0.97211 0.98805 1.87752 1.22456
1.78022 1.43226 0.92042 0.92814 0.92848 0.92588 0.93814 0.93408
0.98396 0.94625 0.90644 0.92188 0.93908 0.97788 0.87938 0.95461
0.91063 0.96803 0.89074
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.30 9.57 37.16 0.36 -1.95 16
2 C 0.09 1.87 2.85 -26.68 -0.08 1.80 16
3 H 0.07 1.38 5.13 -51.93 -0.27 1.11 16
4 C -0.17 -3.52 3.44 -26.59 -0.09 -3.61 16
5 C 0.25 5.63 0.07 -132.57 -0.01 5.62 16
6 C -0.52 -12.55 2.87 -34.44 -0.10 -12.65 16
7 H 0.05 1.34 6.27 -52.48 -0.33 1.01 16
8 C 0.09 2.22 3.61 -17.82 -0.06 2.16 16
9 N -0.84 -22.08 10.89 55.43 0.60 -21.48 16
10 Si 0.87 19.91 29.52 -169.99 -5.02 14.89 16
11 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16
12 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16
13 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16
14 N -0.50 -11.42 3.99 -236.54 -0.94 -12.37 16
15 C 0.05 0.97 8.86 60.06 0.53 1.50 16
16 C 0.02 0.44 8.80 60.06 0.53 0.97 16
17 C -0.13 -2.95 4.15 -26.59 -0.11 -3.06 16
18 C 0.10 2.17 3.91 -26.68 -0.10 2.07 16
19 H 0.07 1.46 8.14 -51.93 -0.42 1.04 16
20 C -0.17 -3.57 7.80 37.16 0.29 -3.28 16
21 O -0.39 -8.36 10.24 -35.23 -0.36 -8.72 16
22 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16
23 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16
24 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16
25 H 0.06 1.16 6.71 -51.93 -0.35 0.81 16
26 H 0.04 0.91 6.36 -51.93 -0.33 0.58 16
27 H 0.26 6.62 8.31 -40.82 -0.34 6.28 16
28 H 0.00 -0.05 6.66 -51.93 -0.35 -0.39 16
29 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16
30 H 0.07 1.73 6.93 -51.93 -0.36 1.37 16
31 H 0.06 1.23 6.17 -51.93 -0.32 0.91 16
32 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16
33 H 0.00 0.08 6.35 -51.93 -0.33 -0.25 16
34 H 0.10 2.60 6.22 -51.93 -0.32 2.28 16
35 H 0.03 0.61 6.18 -51.93 -0.32 0.29 16
36 H 0.07 1.65 6.35 -51.93 -0.33 1.32 16
37 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16
38 H 0.09 2.05 3.37 -51.93 -0.17 1.88 16
LS Contribution 269.87 15.07 4.07 4.07
Total: -1.00 -25.96 269.87 -6.37 -32.33
By element:
Atomic # 1 Polarization: 7.60 SS G_CDS: -5.87 Total: 1.72 kcal
Atomic # 6 Polarization: -11.60 SS G_CDS: 1.15 Total: -10.44 kcal
Atomic # 7 Polarization: -33.51 SS G_CDS: -0.34 Total: -33.85 kcal
Atomic # 8 Polarization: -8.36 SS G_CDS: -0.36 Total: -8.72 kcal
Atomic # 14 Polarization: 19.91 SS G_CDS: -5.02 Total: 14.89 kcal
Total LS contribution 4.07 Total: 4.07 kcal
Total: -25.96 -6.37 -32.33 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000710009558.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 6.808 kcal
(2) G-P(sol) polarization free energy of solvation -25.964 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.156 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.371 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.335 kcal
(6) G-S(sol) free energy of system = (1) + (5) -25.527 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.37 seconds