Wall clock time and date at job start Mon Mar 30 2020 05:12:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 H 1.08992 * 109.48902 * 2 1 4 4 C 1.53095 * 109.47963 * 120.03219 * 2 1 3 5 5 C 1.53180 * 109.15665 * 177.59222 * 4 2 1 6 6 C 1.50694 * 109.54680 * 62.97811 * 5 4 2 7 7 H 1.08004 * 119.99770 * 357.20289 * 6 5 4 8 8 C 1.37879 * 120.00173 * 177.21359 * 6 5 4 9 9 N 1.31514 * 119.99892 * 0.65215 * 8 6 5 10 10 Si 1.86801 * 120.00194 * 180.65717 * 8 6 5 11 11 H 1.48500 * 109.47069 * 59.99184 * 10 8 6 12 12 H 1.48493 * 109.47177 * 179.97438 * 10 8 6 13 13 H 1.48501 * 109.46868 * 299.99626 * 10 8 6 14 14 N 1.46904 * 109.53620 * 183.14901 * 5 4 2 15 15 C 1.46901 * 111.00282 * 299.94706 * 14 5 4 16 16 C 1.46896 * 110.99891 * 63.90553 * 14 5 4 17 17 C 1.53177 * 109.03906 * 303.01393 * 5 4 2 18 18 C 1.53088 * 109.15997 * 56.98265 * 17 5 4 19 19 H 1.08998 * 109.48355 * 182.40798 * 18 17 5 20 20 C 1.53007 * 109.48067 * 62.37556 * 18 17 5 21 21 O 1.42903 * 109.41885 * 302.39218 * 18 17 5 22 22 H 1.09002 * 109.46786 * 299.96883 * 1 2 3 23 23 H 1.08998 * 109.46891 * 59.97290 * 1 2 3 24 24 H 1.09000 * 109.46812 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.52168 * 297.49403 * 4 2 1 26 26 H 1.08999 * 109.52266 * 57.68445 * 4 2 1 27 27 H 0.96994 * 119.99782 * 180.02562 * 9 8 6 28 28 H 1.08999 * 109.46898 * 64.91944 * 15 14 5 29 29 H 1.08998 * 109.47049 * 184.91368 * 15 14 5 30 30 H 1.08994 * 109.46926 * 304.91704 * 15 14 5 31 31 H 1.09003 * 109.47538 * 59.99988 * 16 14 5 32 32 H 1.09004 * 109.47388 * 179.97438 * 16 14 5 33 33 H 1.09005 * 109.47442 * 299.99652 * 16 14 5 34 34 H 1.08997 * 109.52454 * 176.88855 * 17 5 4 35 35 H 1.09000 * 109.52265 * 297.07930 * 17 5 4 36 36 H 1.09000 * 109.46899 * 42.71624 * 20 18 17 37 37 H 1.09000 * 109.47135 * 162.71432 * 20 18 17 38 38 H 1.08996 * 109.47233 * 282.71614 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0406 -0.7224 1.2495 5 6 3.5712 -0.7709 1.2120 6 6 4.1213 0.6314 1.2539 7 1 3.4478 1.4758 1.2569 8 6 5.4843 0.8366 1.2883 9 7 6.3046 -0.1912 1.2716 10 14 6.1658 2.5745 1.3588 11 1 5.6699 3.2512 2.5841 12 1 7.6495 2.5235 1.3880 13 1 5.7194 3.3301 0.1610 14 7 4.0672 -1.5280 2.3691 15 6 3.6486 -0.8989 3.6288 16 6 3.6286 -2.9287 2.3089 17 6 4.0177 -1.4601 -0.0810 18 6 3.4307 -0.7093 -1.2791 19 1 3.7099 -1.2202 -2.2006 20 6 3.9761 0.7201 -1.3026 21 8 2.0066 -0.6742 -1.1664 22 1 -0.3633 0.5134 0.8903 23 1 -0.3633 0.5142 -0.8897 24 1 -0.3633 -1.0277 -0.0005 25 1 1.7150 -0.1844 2.1399 26 1 1.6443 -1.7375 1.2709 27 1 7.2634 -0.0468 1.2961 28 1 2.5628 -0.9436 3.7139 29 1 4.1008 -1.4284 4.4673 30 1 3.9713 0.1421 3.6397 31 1 4.0114 -3.3906 1.3988 32 1 4.0099 -3.4665 3.1769 33 1 2.5393 -2.9686 2.3061 34 1 5.1059 -1.4498 -0.1423 35 1 3.6614 -2.4902 -0.0865 36 1 5.0429 0.7056 -1.0796 37 1 3.8172 1.1534 -2.2901 38 1 3.4568 1.3194 -0.5549 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000710009558.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:12:17 Heat of formation + Delta-G solvation = -41.264876 kcal Electronic energy + Delta-G solvation = -18144.635876 eV Core-core repulsion = 15601.277290 eV Total energy + Delta-G solvation = -2543.358586 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.14764 -37.75377 -34.78822 -33.66067 -32.40568 -29.59732 -28.94771 -27.05498 -26.79810 -24.49467 -23.03846 -21.35841 -20.12584 -17.65975 -17.21909 -16.95186 -16.52181 -15.63973 -15.49017 -15.03183 -14.78326 -14.48039 -14.11202 -13.77291 -13.50935 -13.17854 -13.08042 -12.90390 -12.59326 -12.52720 -12.38279 -12.25839 -12.14854 -12.07040 -11.70595 -11.42394 -11.13936 -10.97796 -10.65367 -10.10827 -10.02942 -8.41179 -7.78486 -5.88867 1.44958 1.50117 1.51753 2.53503 3.08613 3.32816 3.77410 4.16640 4.27104 4.38838 4.48648 4.58580 4.60336 4.65310 4.72567 4.78779 4.84994 4.86607 4.87749 4.96562 5.06041 5.11885 5.23076 5.26088 5.28573 5.36425 5.40292 5.43919 5.64299 5.79907 5.93029 6.02155 6.36589 6.66222 6.74833 6.97489 7.24217 7.69129 9.18478 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.022826 B = 0.014945 C = 0.011865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1226.372760 B = 1873.082533 C = 2359.364218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.089 3.911 3 H 0.055 0.945 4 C -0.160 4.160 5 C 0.240 3.760 6 C -0.507 4.507 7 H 0.047 0.953 8 C 0.060 3.940 9 N -0.863 5.863 10 Si 0.906 3.094 11 H -0.280 1.280 12 H -0.294 1.294 13 H -0.272 1.272 14 N -0.524 5.524 15 C 0.052 3.948 16 C 0.027 3.973 17 C -0.123 4.123 18 C 0.101 3.899 19 H 0.089 0.911 20 C -0.157 4.157 21 O -0.397 6.397 22 H 0.079 0.921 23 H 0.065 0.935 24 H 0.057 0.943 25 H 0.056 0.944 26 H 0.044 0.956 27 H 0.250 0.750 28 H 0.011 0.989 29 H 0.047 0.953 30 H 0.052 0.948 31 H 0.052 0.948 32 H 0.056 0.944 33 H 0.013 0.987 34 H 0.075 0.925 35 H 0.027 0.973 36 H 0.050 0.950 37 H 0.032 0.968 38 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.981 -0.703 -0.921 7.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.032 3.968 3 H 0.073 0.927 4 C -0.200 4.200 5 C 0.152 3.848 6 C -0.546 4.546 7 H 0.065 0.935 8 C -0.144 4.144 9 N -0.499 5.499 10 Si 0.734 3.266 11 H -0.206 1.206 12 H -0.221 1.221 13 H -0.197 1.197 14 N -0.246 5.246 15 C -0.096 4.096 16 C -0.121 4.121 17 C -0.161 4.161 18 C 0.044 3.956 19 H 0.107 0.893 20 C -0.214 4.214 21 O -0.317 6.317 22 H 0.098 0.902 23 H 0.084 0.916 24 H 0.076 0.924 25 H 0.074 0.926 26 H 0.063 0.937 27 H 0.059 0.941 28 H 0.029 0.971 29 H 0.066 0.934 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.075 0.925 33 H 0.031 0.969 34 H 0.093 0.907 35 H 0.046 0.954 36 H 0.069 0.931 37 H 0.051 0.949 38 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -6.366 -0.850 -1.053 6.509 hybrid contribution 0.184 0.932 0.440 1.047 sum -6.183 0.082 -0.614 6.214 Atomic orbital electron populations 1.21758 0.92290 1.02489 1.02739 1.22031 0.94746 0.95461 0.84602 0.92742 1.22733 1.00288 0.98930 0.98049 1.18615 0.86981 0.92260 0.86949 1.20731 0.91089 0.90733 1.52001 0.93503 1.25159 0.97408 0.96982 0.94858 1.70119 1.02003 1.29623 1.48155 0.86469 0.77255 0.84331 0.78528 1.20629 1.22061 1.19722 1.62244 1.59521 1.00428 1.02419 1.21969 0.95977 0.99916 0.91747 1.22352 0.96641 0.92054 1.01078 1.22107 1.02334 0.95726 0.95977 1.21990 0.79772 0.96336 0.97541 0.89323 1.22546 1.01945 0.97415 0.99518 1.87762 1.21923 1.78173 1.43831 0.90250 0.91554 0.92364 0.92556 0.93746 0.94068 0.97107 0.93387 0.92866 0.92941 0.92479 0.96875 0.90654 0.95426 0.93113 0.94903 0.90131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.96 9.57 71.99 0.69 -3.27 16 2 C 0.09 3.36 2.85 30.63 0.09 3.44 16 3 H 0.05 2.18 5.13 -2.39 -0.01 2.17 16 4 C -0.16 -6.42 3.44 30.69 0.11 -6.32 16 5 C 0.24 10.78 0.07 2.90 0.00 10.78 16 6 C -0.51 -24.49 2.87 25.60 0.07 -24.42 16 7 H 0.05 2.30 6.27 -2.91 -0.02 2.28 16 8 C 0.06 3.00 3.61 84.66 0.31 3.31 16 9 N -0.86 -45.86 10.89 21.45 0.23 -45.62 16 10 Si 0.91 40.89 29.52 68.60 2.02 42.91 16 11 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 12 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 13 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 14 N -0.52 -23.63 3.99 -902.28 -3.60 -27.23 16 15 C 0.05 2.18 8.86 127.69 1.13 3.31 16 16 C 0.03 1.07 8.80 127.69 1.12 2.20 16 17 C -0.12 -5.57 4.15 30.68 0.13 -5.44 16 18 C 0.10 4.20 3.91 30.63 0.12 4.32 16 19 H 0.09 3.38 8.14 -2.39 -0.02 3.37 16 20 C -0.16 -6.62 7.80 71.98 0.56 -6.06 16 21 O -0.40 -16.01 10.24 -148.98 -1.53 -17.53 16 22 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 23 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 24 H 0.06 1.64 8.14 -2.39 -0.02 1.63 16 25 H 0.06 2.23 6.71 -2.39 -0.02 2.21 16 26 H 0.04 1.76 6.36 -2.39 -0.02 1.74 16 27 H 0.25 13.14 8.31 -92.71 -0.77 12.37 16 28 H 0.01 0.41 6.66 -2.39 -0.02 0.39 16 29 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 30 H 0.05 2.42 6.93 -2.39 -0.02 2.40 16 31 H 0.05 2.11 6.17 -2.39 -0.01 2.09 16 32 H 0.06 2.04 8.14 -2.38 -0.02 2.02 16 33 H 0.01 0.49 6.35 -2.38 -0.02 0.47 16 34 H 0.08 3.86 6.22 -2.39 -0.01 3.84 16 35 H 0.03 1.21 6.18 -2.39 -0.01 1.20 16 36 H 0.05 2.33 6.35 -2.39 -0.02 2.32 16 37 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 38 H 0.08 3.56 3.37 -2.39 -0.01 3.55 16 Total: -1.00 -53.35 269.87 2.49 -50.86 By element: Atomic # 1 Polarization: 13.74 SS G_CDS: 1.04 Total: 14.78 kcal Atomic # 6 Polarization: -22.48 SS G_CDS: 4.32 Total: -18.15 kcal Atomic # 7 Polarization: -69.49 SS G_CDS: -3.37 Total: -72.86 kcal Atomic # 8 Polarization: -16.01 SS G_CDS: -1.53 Total: -17.53 kcal Atomic # 14 Polarization: 40.89 SS G_CDS: 2.02 Total: 42.91 kcal Total: -53.35 2.49 -50.86 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710009558.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.591 kcal (2) G-P(sol) polarization free energy of solvation -53.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds