Wall clock time and date at job start Mon Mar 30 2020 03:34:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.54086 * 2 1 4 4 C 1.53102 * 109.50557 * 120.11093 * 2 1 3 5 5 N 1.47016 * 109.25606 * 63.08705 * 4 2 1 6 6 C 1.46903 * 110.99576 * 182.38923 * 5 4 2 7 7 C 1.53000 * 109.46805 * 170.00040 * 6 5 4 8 8 C 1.53005 * 109.47138 * 180.02562 * 7 6 5 9 9 C 1.50696 * 109.47030 * 179.97438 * 8 7 6 10 10 H 1.07997 * 120.00429 * 0.02562 * 9 8 7 11 11 C 1.37880 * 119.99561 * 179.97438 * 9 8 7 12 12 N 1.31507 * 120.00493 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 119.99628 * 180.02562 * 11 9 8 14 14 H 1.48499 * 109.47286 * 60.00253 * 13 11 9 15 15 H 1.48501 * 109.47130 * 180.02562 * 13 11 9 16 16 H 1.48502 * 109.47436 * 299.99887 * 13 11 9 17 17 C 1.47012 * 110.75275 * 58.61648 * 5 4 2 18 18 C 1.53098 * 109.25866 * 301.38128 * 17 5 4 19 19 H 1.08998 * 109.50446 * 296.87270 * 18 17 5 20 20 C 1.53002 * 109.50461 * 176.78268 * 18 17 5 21 21 O 1.43014 * 109.25881 * 56.85080 * 18 17 5 22 22 H 1.08995 * 109.47375 * 299.88531 * 1 2 3 23 23 H 1.08999 * 109.47378 * 59.89140 * 1 2 3 24 24 H 1.09008 * 109.47095 * 179.89011 * 1 2 3 25 25 H 1.08999 * 109.50407 * 303.15625 * 4 2 1 26 26 H 1.09000 * 109.50181 * 183.02180 * 4 2 1 27 27 H 1.08994 * 109.47141 * 290.00331 * 6 5 4 28 28 H 1.09004 * 109.46868 * 50.00577 * 6 5 4 29 29 H 1.09003 * 109.47440 * 299.99803 * 7 6 5 30 30 H 1.08997 * 109.47199 * 60.00312 * 7 6 5 31 31 H 1.08994 * 109.46879 * 300.00335 * 8 7 6 32 32 H 1.09004 * 109.46797 * 60.00377 * 8 7 6 33 33 H 0.96994 * 120.00517 * 180.02562 * 12 11 9 34 34 H 1.09003 * 109.50911 * 61.31598 * 17 5 4 35 35 H 1.08997 * 109.50825 * 181.40259 * 17 5 4 36 36 H 1.08999 * 109.46851 * 60.00347 * 20 18 17 37 37 H 1.09003 * 109.46438 * 179.97438 * 20 18 17 38 38 H 1.08992 * 109.47309 * 299.99877 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8946 1.0272 0.0000 4 6 2.0412 -0.7240 1.2484 5 7 1.6109 -2.1291 1.2043 6 6 2.0336 -2.8472 2.4142 7 6 1.3630 -4.2219 2.4517 8 6 1.8027 -4.9696 3.7121 9 6 1.1416 -6.3234 3.7493 10 1 0.4750 -6.6209 2.9535 11 6 1.3888 -7.1825 4.7990 12 7 2.2010 -6.8205 5.7679 13 14 0.5700 -8.8609 4.8448 14 1 0.9673 -9.6384 3.6436 15 1 0.9966 -9.5866 6.0682 16 1 -0.9053 -8.6918 4.8594 17 6 2.1185 -2.7916 -0.0059 18 6 1.6065 -2.0469 -1.2417 19 1 0.5188 -2.1071 -1.2782 20 6 2.1961 -2.6830 -2.5021 21 8 2.0076 -0.6762 -1.1662 22 1 -0.3634 0.5120 0.8910 23 1 -0.3634 0.5155 -0.8890 24 1 -0.3634 -1.0277 -0.0020 25 1 1.6330 -0.2461 2.1390 26 1 3.1299 -0.6773 1.2759 27 1 3.1164 -2.9713 2.4034 28 1 1.7420 -2.2765 3.2959 29 1 0.2801 -4.0978 2.4625 30 1 1.6546 -4.7925 1.5700 31 1 2.8855 -5.0937 3.7018 32 1 1.5107 -4.3988 4.5936 33 1 2.3751 -7.4250 6.5061 34 1 3.2085 -2.7781 0.0016 35 1 1.7676 -3.8232 -0.0305 36 1 1.8933 -3.7287 -2.5571 37 1 1.8308 -2.1526 -3.3816 38 1 3.2837 -2.6211 -2.4657 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042221645.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:34:32 Heat of formation + Delta-G solvation = -62.267010 kcal Electronic energy + Delta-G solvation = -16273.612656 eV Core-core repulsion = 13729.343349 eV Total energy + Delta-G solvation = -2544.269307 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.90626 -36.17707 -33.58885 -33.31067 -31.46151 -29.92955 -26.92925 -26.81378 -24.40177 -22.67668 -21.79940 -19.92551 -19.38060 -16.53270 -16.41567 -15.95230 -15.41074 -14.76682 -14.49100 -14.39133 -13.79287 -13.65704 -12.93347 -12.50160 -12.35252 -12.22249 -11.97806 -11.74773 -11.63363 -11.46796 -11.20054 -11.04496 -10.80304 -10.58229 -10.46558 -10.26694 -9.60615 -9.56612 -9.28575 -9.02999 -8.33269 -8.10512 -5.98611 -4.00844 3.34261 3.38426 3.41054 3.72010 4.04546 4.47631 4.82238 4.89721 5.03478 5.09704 5.21683 5.36812 5.37132 5.42261 5.54372 5.60416 5.68398 5.71870 5.86735 5.92184 5.94995 5.99633 6.09812 6.11075 6.30299 6.33096 6.68610 6.74975 7.09752 7.21403 7.31554 7.33723 7.68921 7.83991 8.01551 8.44820 9.06092 9.63068 11.12848 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.041870 B = 0.005108 C = 0.004838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 668.580077 B = 5480.726693 C = 5785.653391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.091 3.909 3 H 0.100 0.900 4 C 0.022 3.978 5 N -0.534 5.534 6 C 0.056 3.944 7 C -0.104 4.104 8 C 0.022 3.978 9 C -0.519 4.519 10 H 0.054 0.946 11 C 0.056 3.944 12 N -0.897 5.897 13 Si 0.892 3.108 14 H -0.277 1.277 15 H -0.287 1.287 16 H -0.277 1.277 17 C 0.022 3.978 18 C 0.086 3.914 19 H 0.069 0.931 20 C -0.144 4.144 21 O -0.382 6.382 22 H 0.063 0.937 23 H 0.054 0.946 24 H 0.073 0.927 25 H 0.083 0.917 26 H 0.038 0.962 27 H 0.029 0.971 28 H 0.070 0.930 29 H 0.055 0.945 30 H 0.046 0.954 31 H 0.013 0.987 32 H 0.015 0.985 33 H 0.261 0.739 34 H 0.038 0.962 35 H 0.091 0.909 36 H 0.073 0.927 37 H 0.062 0.938 38 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.909 12.151 -12.592 17.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.033 3.967 3 H 0.118 0.882 4 C -0.107 4.107 5 N -0.259 5.259 6 C -0.071 4.071 7 C -0.142 4.142 8 C -0.016 4.016 9 C -0.558 4.558 10 H 0.073 0.927 11 C -0.145 4.145 12 N -0.536 5.536 13 Si 0.720 3.280 14 H -0.203 1.203 15 H -0.213 1.213 16 H -0.202 1.202 17 C -0.106 4.106 18 C 0.028 3.972 19 H 0.086 0.914 20 C -0.201 4.201 21 O -0.301 6.301 22 H 0.082 0.918 23 H 0.073 0.927 24 H 0.092 0.908 25 H 0.101 0.899 26 H 0.056 0.944 27 H 0.047 0.953 28 H 0.089 0.911 29 H 0.074 0.926 30 H 0.065 0.935 31 H 0.031 0.969 32 H 0.034 0.966 33 H 0.070 0.930 34 H 0.056 0.944 35 H 0.110 0.890 36 H 0.092 0.908 37 H 0.081 0.919 38 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -1.229 12.169 -12.572 17.540 hybrid contribution 0.387 -1.057 0.511 1.236 sum -0.842 11.112 -12.061 16.421 Atomic orbital electron populations 1.22274 0.95644 1.03652 1.01650 1.22225 0.94346 0.95567 0.84551 0.88225 1.22771 0.98376 0.90540 0.98995 1.62290 1.59487 1.01269 1.02863 1.22322 0.97555 0.96553 0.90677 1.21644 0.99737 0.92264 1.00525 1.19068 0.96447 0.94496 0.91547 1.21208 1.27294 1.00420 1.06835 0.92746 1.25023 0.95301 0.98470 0.95663 1.69949 1.36252 1.36608 1.10812 0.86658 0.79875 0.84159 0.77306 1.20267 1.21301 1.20224 1.22847 0.98004 0.99655 0.90112 1.22176 0.98991 0.81537 0.94489 0.91352 1.21745 1.01720 1.00431 0.96251 1.87989 1.75744 1.23459 1.42939 0.91791 0.92725 0.90757 0.89852 0.94421 0.95270 0.91117 0.92601 0.93520 0.96857 0.96618 0.92976 0.94363 0.89029 0.90833 0.91877 0.92020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.94 8.89 37.16 0.33 -1.61 16 2 C 0.09 1.08 3.92 -26.68 -0.10 0.98 16 3 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 4 C 0.02 0.29 5.06 -3.71 -0.02 0.27 16 5 N -0.53 -8.24 4.10 -234.30 -0.96 -9.20 16 6 C 0.06 0.99 4.96 -3.82 -0.02 0.97 16 7 C -0.10 -2.18 5.09 -26.73 -0.14 -2.31 16 8 C 0.02 0.58 4.97 -27.88 -0.14 0.44 16 9 C -0.52 -14.89 9.11 -34.44 -0.31 -15.20 16 10 H 0.05 1.51 7.74 -52.49 -0.41 1.11 16 11 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 12 N -0.90 -27.21 13.29 55.43 0.74 -26.48 16 13 Si 0.89 21.83 29.54 -169.99 -5.02 16.80 16 14 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 15 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 16 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 17 C 0.02 0.32 4.72 -3.71 -0.02 0.30 16 18 C 0.09 1.09 3.02 -26.68 -0.08 1.01 16 19 H 0.07 0.87 6.49 -51.93 -0.34 0.53 16 20 C -0.14 -1.51 9.57 37.16 0.36 -1.16 16 21 O -0.38 -5.16 10.28 -35.23 -0.36 -5.52 16 22 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 23 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 24 H 0.07 0.94 6.12 -51.92 -0.32 0.63 16 25 H 0.08 1.02 8.09 -51.93 -0.42 0.60 16 26 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.03 0.53 8.12 -51.93 -0.42 0.11 16 28 H 0.07 1.24 8.04 -51.93 -0.42 0.83 16 29 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 30 H 0.05 0.96 6.51 -51.93 -0.34 0.62 16 31 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 34 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 35 H 0.09 1.38 6.38 -51.93 -0.33 1.04 16 36 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 38 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 298.66 15.07 4.50 4.50 Total: -1.00 -30.40 298.66 -8.12 -38.52 By element: Atomic # 1 Polarization: 2.91 SS G_CDS: -6.78 Total: -3.86 kcal Atomic # 6 Polarization: -14.53 SS G_CDS: -0.24 Total: -14.77 kcal Atomic # 7 Polarization: -35.45 SS G_CDS: -0.22 Total: -35.67 kcal Atomic # 8 Polarization: -5.16 SS G_CDS: -0.36 Total: -5.52 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -30.40 -8.12 -38.52 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042221645.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.744 kcal (2) G-P(sol) polarization free energy of solvation -30.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds