Wall clock time and date at job start Mon Mar 30 2020 03:34:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.54086 * 2 1 4 4 C 1.53102 * 109.50557 * 120.11093 * 2 1 3 5 5 N 1.47016 * 109.25606 * 63.08705 * 4 2 1 6 6 C 1.46903 * 110.99576 * 182.38923 * 5 4 2 7 7 C 1.53000 * 109.46805 * 170.00040 * 6 5 4 8 8 C 1.53005 * 109.47138 * 180.02562 * 7 6 5 9 9 C 1.50696 * 109.47030 * 179.97438 * 8 7 6 10 10 H 1.07997 * 120.00429 * 0.02562 * 9 8 7 11 11 C 1.37880 * 119.99561 * 179.97438 * 9 8 7 12 12 N 1.31507 * 120.00493 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 119.99628 * 180.02562 * 11 9 8 14 14 H 1.48499 * 109.47286 * 60.00253 * 13 11 9 15 15 H 1.48501 * 109.47130 * 180.02562 * 13 11 9 16 16 H 1.48502 * 109.47436 * 299.99887 * 13 11 9 17 17 C 1.47012 * 110.75275 * 58.61648 * 5 4 2 18 18 C 1.53098 * 109.25866 * 301.38128 * 17 5 4 19 19 H 1.08998 * 109.50446 * 296.87270 * 18 17 5 20 20 C 1.53002 * 109.50461 * 176.78268 * 18 17 5 21 21 O 1.43014 * 109.25881 * 56.85080 * 18 17 5 22 22 H 1.08995 * 109.47375 * 299.88531 * 1 2 3 23 23 H 1.08999 * 109.47378 * 59.89140 * 1 2 3 24 24 H 1.09008 * 109.47095 * 179.89011 * 1 2 3 25 25 H 1.08999 * 109.50407 * 303.15625 * 4 2 1 26 26 H 1.09000 * 109.50181 * 183.02180 * 4 2 1 27 27 H 1.08994 * 109.47141 * 290.00331 * 6 5 4 28 28 H 1.09004 * 109.46868 * 50.00577 * 6 5 4 29 29 H 1.09003 * 109.47440 * 299.99803 * 7 6 5 30 30 H 1.08997 * 109.47199 * 60.00312 * 7 6 5 31 31 H 1.08994 * 109.46879 * 300.00335 * 8 7 6 32 32 H 1.09004 * 109.46797 * 60.00377 * 8 7 6 33 33 H 0.96994 * 120.00517 * 180.02562 * 12 11 9 34 34 H 1.09003 * 109.50911 * 61.31598 * 17 5 4 35 35 H 1.08997 * 109.50825 * 181.40259 * 17 5 4 36 36 H 1.08999 * 109.46851 * 60.00347 * 20 18 17 37 37 H 1.09003 * 109.46438 * 179.97438 * 20 18 17 38 38 H 1.08992 * 109.47309 * 299.99877 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8946 1.0272 0.0000 4 6 2.0412 -0.7240 1.2484 5 7 1.6109 -2.1291 1.2043 6 6 2.0336 -2.8472 2.4142 7 6 1.3630 -4.2219 2.4517 8 6 1.8027 -4.9696 3.7121 9 6 1.1416 -6.3234 3.7493 10 1 0.4750 -6.6209 2.9535 11 6 1.3888 -7.1825 4.7990 12 7 2.2010 -6.8205 5.7679 13 14 0.5700 -8.8609 4.8448 14 1 0.9673 -9.6384 3.6436 15 1 0.9966 -9.5866 6.0682 16 1 -0.9053 -8.6918 4.8594 17 6 2.1185 -2.7916 -0.0059 18 6 1.6065 -2.0469 -1.2417 19 1 0.5188 -2.1071 -1.2782 20 6 2.1961 -2.6830 -2.5021 21 8 2.0076 -0.6762 -1.1662 22 1 -0.3634 0.5120 0.8910 23 1 -0.3634 0.5155 -0.8890 24 1 -0.3634 -1.0277 -0.0020 25 1 1.6330 -0.2461 2.1390 26 1 3.1299 -0.6773 1.2759 27 1 3.1164 -2.9713 2.4034 28 1 1.7420 -2.2765 3.2959 29 1 0.2801 -4.0978 2.4625 30 1 1.6546 -4.7925 1.5700 31 1 2.8855 -5.0937 3.7018 32 1 1.5107 -4.3988 4.5936 33 1 2.3751 -7.4250 6.5061 34 1 3.2085 -2.7781 0.0016 35 1 1.7676 -3.8232 -0.0305 36 1 1.8933 -3.7287 -2.5571 37 1 1.8308 -2.1526 -3.3816 38 1 3.2837 -2.6211 -2.4657 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042221645.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:34:30 Heat of formation + Delta-G solvation = -81.489538 kcal Electronic energy + Delta-G solvation = -16274.446207 eV Core-core repulsion = 13729.343349 eV Total energy + Delta-G solvation = -2545.102858 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.98037 -37.52868 -35.48887 -34.33567 -33.26361 -31.06432 -28.61868 -27.85076 -25.97796 -23.93213 -23.21203 -21.66025 -20.41297 -18.50717 -17.48124 -17.25860 -16.66378 -16.50370 -15.81254 -15.53296 -15.27940 -15.01025 -14.30589 -13.93599 -13.68150 -13.42086 -13.27278 -13.02288 -12.82697 -12.76934 -12.61407 -12.52046 -12.46290 -12.14934 -11.91813 -11.52925 -11.40141 -11.30662 -11.05372 -10.55846 -10.48178 -9.35720 -8.20496 -6.31832 1.39976 1.43194 1.51153 2.40607 2.72172 2.88784 3.12639 3.79432 3.90452 3.95501 4.09440 4.18444 4.25266 4.40381 4.44190 4.47980 4.60568 4.67603 4.69108 4.76609 4.81625 4.93995 5.00667 5.02555 5.04724 5.15504 5.21942 5.27635 5.43361 5.50385 5.71727 5.84318 5.97290 6.03549 6.25687 6.27294 6.84627 7.37509 8.91317 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.041870 B = 0.005108 C = 0.004838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 668.580077 B = 5480.726693 C = 5785.653391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.089 3.911 3 H 0.124 0.876 4 C 0.020 3.980 5 N -0.537 5.537 6 C 0.067 3.933 7 C -0.087 4.087 8 C 0.026 3.974 9 C -0.544 4.544 10 H 0.059 0.941 11 C 0.000 4.000 12 N -0.934 5.934 13 Si 0.966 3.034 14 H -0.267 1.267 15 H -0.282 1.282 16 H -0.266 1.266 17 C 0.021 3.979 18 C 0.089 3.911 19 H 0.070 0.930 20 C -0.141 4.141 21 O -0.392 6.392 22 H 0.074 0.926 23 H 0.065 0.935 24 H 0.056 0.944 25 H 0.094 0.906 26 H 0.033 0.967 27 H 0.021 0.979 28 H 0.072 0.928 29 H 0.053 0.947 30 H 0.049 0.951 31 H -0.012 1.012 32 H -0.008 1.008 33 H 0.264 0.736 34 H 0.030 0.970 35 H 0.083 0.917 36 H 0.083 0.917 37 H 0.074 0.926 38 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.794 12.336 -13.779 18.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.032 3.968 3 H 0.141 0.859 4 C -0.108 4.108 5 N -0.261 5.261 6 C -0.060 4.060 7 C -0.125 4.125 8 C -0.012 4.012 9 C -0.582 4.582 10 H 0.078 0.922 11 C -0.198 4.198 12 N -0.574 5.574 13 Si 0.790 3.210 14 H -0.191 1.191 15 H -0.208 1.208 16 H -0.191 1.191 17 C -0.107 4.107 18 C 0.031 3.969 19 H 0.088 0.912 20 C -0.198 4.198 21 O -0.312 6.312 22 H 0.093 0.907 23 H 0.084 0.916 24 H 0.075 0.925 25 H 0.112 0.888 26 H 0.051 0.949 27 H 0.040 0.960 28 H 0.090 0.910 29 H 0.072 0.928 30 H 0.068 0.932 31 H 0.007 0.993 32 H 0.011 0.989 33 H 0.073 0.927 34 H 0.048 0.952 35 H 0.102 0.898 36 H 0.102 0.898 37 H 0.093 0.907 38 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -2.118 12.371 -13.779 18.638 hybrid contribution 0.686 -1.066 0.895 1.551 sum -1.432 11.305 -12.884 17.201 Atomic orbital electron populations 1.22221 0.94926 1.02777 1.02746 1.22403 0.94924 0.96250 0.83232 0.85886 1.22890 0.98250 0.89167 1.00534 1.62245 1.59555 1.02305 1.02028 1.22052 0.96629 0.95153 0.92207 1.21371 0.99615 0.93621 0.97882 1.18966 0.94711 0.94367 0.93124 1.21651 1.27668 1.01633 1.07234 0.92232 1.25987 0.95803 1.02893 0.95110 1.70085 1.37569 1.38270 1.11504 0.85495 0.79062 0.78764 0.77701 1.19137 1.20769 1.19132 1.22896 0.97513 0.99622 0.90687 1.22209 0.99098 0.81267 0.94332 0.91240 1.21753 1.01458 1.01051 0.95553 1.87987 1.76050 1.23647 1.43514 0.90748 0.91611 0.92542 0.88753 0.94896 0.96046 0.90988 0.92795 0.93233 0.99324 0.98925 0.92747 0.95176 0.89820 0.89798 0.90695 0.92286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.38 8.89 71.98 0.64 -2.74 16 2 C 0.09 1.93 3.92 30.63 0.12 2.05 16 3 H 0.12 2.10 8.14 -2.39 -0.02 2.08 16 4 C 0.02 0.49 5.06 86.32 0.44 0.93 16 5 N -0.54 -16.15 4.10 -895.20 -3.67 -19.82 16 6 C 0.07 2.40 4.96 86.30 0.43 2.82 16 7 C -0.09 -3.68 5.09 30.60 0.16 -3.53 16 8 C 0.03 1.40 4.97 29.85 0.15 1.54 16 9 C -0.54 -31.49 9.11 25.60 0.23 -31.26 16 10 H 0.06 3.30 7.74 -2.91 -0.02 3.28 16 11 C 0.00 -0.01 5.46 84.66 0.46 0.45 16 12 N -0.93 -57.50 13.29 21.45 0.28 -57.21 16 13 Si 0.97 44.57 29.54 68.60 2.03 46.60 16 14 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 15 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 16 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 17 C 0.02 0.60 4.72 86.31 0.41 1.01 16 18 C 0.09 2.13 3.02 30.63 0.09 2.22 16 19 H 0.07 1.67 6.49 -2.39 -0.02 1.65 16 20 C -0.14 -2.72 9.57 71.98 0.69 -2.03 16 21 O -0.39 -9.85 10.28 -148.98 -1.53 -11.39 16 22 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 23 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 24 H 0.06 1.34 6.12 -2.38 -0.01 1.32 16 25 H 0.09 2.14 8.09 -2.39 -0.02 2.12 16 26 H 0.03 0.86 8.14 -2.39 -0.02 0.84 16 27 H 0.02 0.79 8.12 -2.39 -0.02 0.77 16 28 H 0.07 2.53 8.04 -2.38 -0.02 2.51 16 29 H 0.05 2.29 8.14 -2.39 -0.02 2.27 16 30 H 0.05 2.05 6.51 -2.39 -0.02 2.04 16 31 H -0.01 -0.67 8.14 -2.39 -0.02 -0.69 16 32 H -0.01 -0.44 8.14 -2.38 -0.02 -0.46 16 33 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 34 H 0.03 0.90 8.14 -2.39 -0.02 0.88 16 35 H 0.08 2.48 6.38 -2.39 -0.02 2.47 16 36 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 37 H 0.07 1.27 8.14 -2.39 -0.02 1.26 16 38 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 Total: -1.00 -64.62 298.66 1.92 -62.70 By element: Atomic # 1 Polarization: 6.66 SS G_CDS: 1.00 Total: 7.65 kcal Atomic # 6 Polarization: -32.34 SS G_CDS: 3.81 Total: -28.53 kcal Atomic # 7 Polarization: -73.65 SS G_CDS: -3.38 Total: -77.03 kcal Atomic # 8 Polarization: -9.85 SS G_CDS: -1.53 Total: -11.39 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.60 kcal Total: -64.62 1.92 -62.70 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042221645.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.790 kcal (2) G-P(sol) polarization free energy of solvation -64.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds