Wall clock time and date at job start Mon Mar 30 2020 03:52:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.47017 * 2 1 4 4 O 1.42897 * 109.46693 * 240.00064 * 2 1 3 5 5 C 1.52996 * 109.46840 * 120.00188 * 2 1 3 6 6 C 1.53001 * 109.46954 * 177.64447 * 5 2 1 7 7 C 1.53000 * 109.47378 * 57.64623 * 5 2 1 8 8 N 1.46907 * 109.47233 * 297.64487 * 5 2 1 9 9 C 1.46894 * 110.99791 * 184.82366 * 8 5 2 10 10 C 1.53003 * 109.46959 * 182.77441 * 9 8 5 11 11 C 1.50707 * 115.55038 * 305.33107 * 10 9 8 12 12 H 1.07999 * 119.99794 * 145.06335 * 11 10 9 13 13 C 1.37881 * 119.99644 * 325.06139 * 11 10 9 14 14 N 1.31512 * 120.00312 * 347.93015 * 13 11 10 15 15 Si 1.86805 * 119.99625 * 167.92424 * 13 11 10 16 16 H 1.48496 * 109.46901 * 60.00250 * 15 13 11 17 17 H 1.48494 * 109.47033 * 179.97438 * 15 13 11 18 18 H 1.48501 * 109.47108 * 300.00014 * 15 13 11 19 19 C 1.53002 * 117.50301 * 159.66041 * 10 9 8 20 20 C 1.53001 * 117.49947 * 90.99921 * 10 9 8 21 21 H 1.08999 * 109.47063 * 294.06505 * 1 2 3 22 22 H 1.09005 * 109.47003 * 54.06039 * 1 2 3 23 23 H 1.09001 * 109.47351 * 174.06520 * 1 2 3 24 24 H 0.96692 * 114.00323 * 60.00507 * 4 2 1 25 25 H 1.08991 * 109.47281 * 300.00224 * 6 5 2 26 26 H 1.09004 * 109.46946 * 179.97438 * 6 5 2 27 27 H 1.09005 * 109.47015 * 60.00104 * 6 5 2 28 28 H 1.09004 * 109.47132 * 180.02562 * 7 5 2 29 29 H 1.08996 * 109.47263 * 299.99880 * 7 5 2 30 30 H 1.09003 * 109.47216 * 59.99934 * 7 5 2 31 31 H 1.00902 * 110.99645 * 308.77665 * 8 5 2 32 32 H 1.09002 * 109.47724 * 302.77299 * 9 8 5 33 33 H 1.08998 * 109.47207 * 62.78031 * 9 8 5 34 34 H 0.96993 * 120.00109 * 185.05720 * 14 13 11 35 35 H 1.09000 * 117.49583 * 359.97438 * 19 10 9 36 36 H 1.08998 * 117.50288 * 145.02084 * 19 10 9 37 37 H 1.09002 * 117.50173 * 214.98103 * 20 10 9 38 38 H 1.08997 * 117.49771 * 359.97425 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0062 -0.6736 -1.1668 5 6 2.0399 -0.7213 1.2492 6 6 3.5688 -0.7728 1.2199 7 6 1.4821 -2.1457 1.2792 8 7 1.5972 0.0033 2.4480 9 6 2.1636 -0.5954 3.6640 10 6 1.6265 0.1412 4.8929 11 6 1.8332 1.6340 4.8977 12 1 1.0872 2.2809 5.3352 13 6 2.9746 2.1737 4.3436 14 7 3.9847 1.3931 4.0276 15 14 3.0861 4.0138 4.0417 16 1 2.9363 4.7367 5.3302 17 1 4.4059 4.3381 3.4433 18 1 2.0050 4.4294 3.1123 19 6 1.6937 -0.5856 6.2376 20 6 0.3466 -0.3969 5.5356 21 1 -0.3633 0.4191 0.9383 22 1 -0.3633 0.6032 -0.8321 23 1 -0.3634 -1.0221 -0.1063 24 1 1.7210 -0.2701 -1.9979 25 1 3.8972 -1.3104 0.3305 26 1 3.9321 -1.2863 2.1102 27 1 3.9662 0.2419 1.1986 28 1 1.8451 -2.6594 2.1694 29 1 0.3930 -2.1090 1.3000 30 1 1.8106 -2.6833 0.3897 31 1 1.8302 0.9830 2.3850 32 1 1.8800 -1.6465 3.7177 33 1 3.2502 -0.5132 3.6373 34 1 4.8144 1.7796 3.7066 35 1 2.1201 -1.5887 6.2467 36 1 1.8869 0.0159 7.1257 37 1 -0.3459 0.3288 5.9622 38 1 -0.1131 -1.2753 5.0827 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000128261710.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:52:24 Heat of formation + Delta-G solvation = -30.478083 kcal Electronic energy + Delta-G solvation = -17223.699282 eV Core-core repulsion = 14680.808446 eV Total energy + Delta-G solvation = -2542.890836 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -38.61211 -36.66016 -34.81896 -32.18169 -30.27466 -29.01735 -26.66454 -25.56317 -24.54952 -22.47946 -21.02414 -18.95363 -18.26732 -16.89338 -16.26610 -14.91961 -14.65239 -14.30502 -14.00742 -13.66129 -13.40915 -12.82465 -12.62537 -12.05899 -11.78636 -11.68152 -11.56437 -11.21427 -11.12116 -10.95072 -10.81035 -10.62509 -10.45567 -10.35740 -10.08758 -9.75840 -9.58611 -9.20035 -9.01389 -8.63859 -8.06895 -7.15674 -5.98435 -4.06079 3.25598 3.31904 3.35389 4.34637 4.44607 5.00316 5.20670 5.36155 5.46291 5.58313 5.71328 5.80609 6.00828 6.12994 6.21645 6.27498 6.35339 6.40425 6.48047 6.56209 6.63307 6.66380 6.78381 6.81067 6.84820 6.96997 7.03237 7.06792 7.28299 7.43032 7.64391 7.91815 8.00197 8.31418 8.48884 8.62559 8.92032 9.50474 10.95211 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.022185 B = 0.011096 C = 0.008931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1261.825236 B = 2522.754646 C = 3134.316553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.113 3.887 3 H 0.047 0.953 4 O -0.567 6.567 5 C 0.118 3.882 6 C -0.164 4.164 7 C -0.130 4.130 8 N -0.663 5.663 9 C 0.098 3.902 10 C 0.061 3.939 11 C -0.478 4.478 12 H 0.058 0.942 13 C 0.068 3.932 14 N -0.879 5.879 15 Si 0.885 3.115 16 H -0.278 1.278 17 H -0.288 1.288 18 H -0.275 1.275 19 C -0.208 4.208 20 C -0.205 4.205 21 H 0.085 0.915 22 H 0.041 0.959 23 H 0.059 0.941 24 H 0.369 0.631 25 H 0.048 0.952 26 H 0.060 0.940 27 H 0.051 0.949 28 H 0.050 0.950 29 H 0.056 0.944 30 H 0.052 0.948 31 H 0.349 0.651 32 H 0.028 0.972 33 H 0.084 0.916 34 H 0.261 0.739 35 H 0.061 0.939 36 H 0.074 0.926 37 H 0.070 0.930 38 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.191 -2.985 -7.501 8.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.054 3.946 3 H 0.065 0.935 4 O -0.371 6.371 5 C 0.026 3.974 6 C -0.223 4.223 7 C -0.187 4.187 8 N -0.296 5.296 9 C -0.030 4.030 10 C 0.060 3.940 11 C -0.516 4.516 12 H 0.076 0.924 13 C -0.134 4.134 14 N -0.516 5.516 15 Si 0.713 3.287 16 H -0.203 1.203 17 H -0.214 1.214 18 H -0.200 1.200 19 C -0.247 4.247 20 C -0.242 4.242 21 H 0.103 0.897 22 H 0.060 0.940 23 H 0.078 0.922 24 H 0.215 0.785 25 H 0.067 0.933 26 H 0.079 0.921 27 H 0.070 0.930 28 H 0.069 0.931 29 H 0.075 0.925 30 H 0.071 0.929 31 H 0.169 0.831 32 H 0.046 0.954 33 H 0.102 0.898 34 H 0.071 0.929 35 H 0.080 0.920 36 H 0.093 0.907 37 H 0.088 0.912 38 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -3.337 -3.705 -7.150 8.717 hybrid contribution 0.759 1.713 -0.444 1.925 sum -2.578 -1.993 -7.594 8.264 Atomic orbital electron populations 1.22451 0.96240 1.01978 1.02792 1.21722 0.93119 0.94446 0.85357 0.93466 1.86491 1.77233 1.57697 1.15684 1.20697 0.92714 0.94262 0.89718 1.22340 0.96938 1.01930 1.01124 1.21797 1.00887 0.95339 1.00708 1.60658 1.61701 1.07370 0.99863 1.21533 1.00513 0.93402 0.87555 1.18926 0.92897 0.93683 0.88471 1.20513 1.04585 0.89558 1.36959 0.92426 1.24958 0.95663 0.97576 0.95204 1.69887 1.02801 1.34190 1.44746 0.86751 0.77182 0.85952 0.78807 1.20335 1.21368 1.19997 1.22947 1.01226 1.00281 1.00233 1.22823 0.91489 1.02141 1.07767 0.89662 0.93966 0.92165 0.78532 0.93335 0.92137 0.92956 0.93060 0.92476 0.92916 0.83120 0.95410 0.89839 0.92900 0.92027 0.90729 0.91176 0.91525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.59 8.87 37.16 0.33 -2.26 16 2 C 0.11 1.82 2.92 -26.73 -0.08 1.74 16 3 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 4 O -0.57 -8.28 11.97 -35.23 -0.42 -8.70 16 5 C 0.12 2.17 0.51 -131.60 -0.07 2.10 16 6 C -0.16 -3.15 7.91 37.16 0.29 -2.86 16 7 C -0.13 -2.23 7.84 37.16 0.29 -1.94 16 8 N -0.66 -13.95 5.30 -99.96 -0.53 -14.48 16 9 C 0.10 2.25 4.03 -3.83 -0.02 2.24 16 10 C 0.06 1.49 2.08 -155.65 -0.32 1.16 16 11 C -0.48 -12.57 8.43 -34.44 -0.29 -12.86 16 12 H 0.06 1.54 7.84 -52.49 -0.41 1.13 16 13 C 0.07 1.75 4.21 -17.82 -0.08 1.68 16 14 N -0.88 -22.93 10.79 55.43 0.60 -22.33 16 15 Si 0.89 20.22 29.56 -169.99 -5.02 15.19 16 16 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 17 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 18 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 19 C -0.21 -4.80 9.96 -26.69 -0.27 -5.06 16 20 C -0.20 -4.57 9.93 -26.69 -0.26 -4.83 16 21 H 0.08 1.40 7.50 -51.93 -0.39 1.01 16 22 H 0.04 0.52 8.14 -51.93 -0.42 0.09 16 23 H 0.06 0.86 6.73 -51.93 -0.35 0.51 16 24 H 0.37 3.71 9.08 45.56 0.41 4.13 16 25 H 0.05 0.87 7.62 -51.93 -0.40 0.48 16 26 H 0.06 1.23 6.40 -51.93 -0.33 0.90 16 27 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 28 H 0.05 0.91 6.46 -51.93 -0.34 0.57 16 29 H 0.06 0.95 6.52 -51.93 -0.34 0.62 16 30 H 0.05 0.86 7.75 -51.93 -0.40 0.46 16 31 H 0.35 8.05 6.99 -39.29 -0.27 7.77 16 32 H 0.03 0.62 6.25 -51.93 -0.32 0.29 16 33 H 0.08 2.09 4.25 -51.93 -0.22 1.87 16 34 H 0.26 6.65 8.32 -40.82 -0.34 6.31 16 35 H 0.06 1.34 8.14 -51.93 -0.42 0.91 16 36 H 0.07 1.74 8.14 -51.93 -0.42 1.31 16 37 H 0.07 1.54 8.14 -51.93 -0.42 1.12 16 38 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 LS Contribution 294.35 15.07 4.44 4.44 Total: -1.00 -26.45 294.35 -6.86 -33.31 By element: Atomic # 1 Polarization: 18.93 SS G_CDS: -5.46 Total: 13.47 kcal Atomic # 6 Polarization: -20.43 SS G_CDS: -0.47 Total: -20.90 kcal Atomic # 7 Polarization: -36.88 SS G_CDS: 0.07 Total: -36.81 kcal Atomic # 8 Polarization: -8.28 SS G_CDS: -0.42 Total: -8.70 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -5.02 Total: 15.19 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -26.45 -6.86 -33.31 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000128261710.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.832 kcal (2) G-P(sol) polarization free energy of solvation -26.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.310 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds