Wall clock time and date at job start Mon Mar 30 2020 03:18:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42901 * 113.99740 * 2 1 4 4 H 1.08995 * 109.50318 * 30.07989 * 3 2 1 5 5 C 1.53032 * 109.50320 * 269.99925 * 3 2 1 6 6 N 1.46848 * 109.52348 * 299.23727 * 5 3 2 7 7 C 1.46907 * 110.99958 * 174.16258 * 6 5 3 8 8 C 1.53000 * 109.46914 * 190.25994 * 7 6 5 9 9 C 1.50704 * 109.46662 * 179.97438 * 8 7 6 10 10 H 1.07992 * 120.00268 * 0.02562 * 9 8 7 11 11 C 1.37874 * 119.99556 * 179.97438 * 9 8 7 12 12 N 1.31512 * 120.00511 * 359.97438 * 11 9 8 13 13 Si 1.86806 * 119.99995 * 180.02562 * 11 9 8 14 14 H 1.48502 * 109.47005 * 359.97438 * 13 11 9 15 15 H 1.48497 * 109.47432 * 119.99523 * 13 11 9 16 16 H 1.48500 * 109.47102 * 240.00254 * 13 11 9 17 17 C 1.46842 * 111.20069 * 298.25721 * 6 5 3 18 18 C 1.53036 * 109.52190 * 61.74451 * 17 6 5 19 19 C 1.53123 * 109.27788 * 300.81892 * 18 17 6 20 20 H 1.09007 * 109.52268 * 297.75177 * 19 18 17 21 21 C 1.52999 * 109.52253 * 177.56250 * 19 18 17 22 22 H 1.09004 * 109.47019 * 299.99581 * 1 2 3 23 23 H 1.08997 * 109.46860 * 60.00319 * 1 2 3 24 24 H 1.09001 * 109.46618 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.46473 * 179.22280 * 5 3 2 26 26 H 1.08995 * 109.46713 * 59.25762 * 5 3 2 27 27 H 1.09004 * 109.46587 * 310.25525 * 7 6 5 28 28 H 1.08994 * 109.47194 * 70.25532 * 7 6 5 29 29 H 1.08996 * 109.47342 * 299.99473 * 8 7 6 30 30 H 1.09003 * 109.47499 * 60.00054 * 8 7 6 31 31 H 0.97003 * 120.00374 * 180.02562 * 12 11 9 32 32 H 1.09002 * 109.46766 * 301.72784 * 17 6 5 33 33 H 1.09000 * 109.46420 * 181.75518 * 17 6 5 34 34 H 1.09000 * 109.50632 * 60.76184 * 18 17 6 35 35 H 1.09006 * 109.50216 * 180.87978 * 18 17 6 36 36 H 1.08998 * 109.47352 * 60.00058 * 21 19 18 37 37 H 1.09000 * 109.46881 * 180.02562 * 21 19 18 38 38 H 1.09003 * 109.47137 * 299.99779 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3459 1.9995 0.5149 5 6 2.2180 1.7722 -1.4425 6 7 3.1288 0.8486 -2.1308 7 6 3.2429 1.1862 -3.5560 8 6 3.9857 0.0662 -4.2874 9 6 4.1022 0.4123 -5.7495 10 1 3.6883 1.3385 -6.1199 11 6 4.7381 -0.4531 -6.6141 12 7 5.2435 -1.5803 -6.1629 13 14 4.8833 -0.0240 -8.4264 14 1 4.2382 1.2900 -8.6771 15 1 6.3174 0.0480 -8.8049 16 1 4.2088 -1.0687 -9.2381 17 6 4.4488 0.8269 -1.4879 18 6 4.3076 0.3319 -0.0467 19 6 3.3623 1.2631 0.7174 20 1 3.7880 2.2660 0.7518 21 6 3.1692 0.7391 2.1418 22 1 -0.3633 0.5138 0.8901 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3632 -1.0277 -0.0005 25 1 2.6485 2.7736 -1.4418 26 1 1.2590 1.7899 -1.9603 27 1 2.2466 1.3007 -3.9831 28 1 3.7946 2.1198 -3.6652 29 1 4.9819 -0.0484 -3.8603 30 1 3.4339 -0.8675 -4.1783 31 1 5.6913 -2.1890 -6.7712 32 1 4.8689 1.8327 -1.4868 33 1 5.1100 0.1578 -2.0385 34 1 3.9005 -0.6793 -0.0474 35 1 5.2854 0.3307 0.4351 36 1 4.1329 0.7039 2.6498 37 1 2.4958 1.4023 2.6848 38 1 2.7409 -0.2626 2.1055 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000221130564.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:32 Heat of formation + Delta-G solvation = -58.632697 kcal Electronic energy + Delta-G solvation = -16544.741109 eV Core-core repulsion = 14000.629398 eV Total energy + Delta-G solvation = -2544.111711 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.42896 -36.54209 -34.38602 -32.78389 -30.11912 -29.75990 -27.25299 -26.23638 -24.06404 -22.79222 -21.85802 -20.04139 -19.31146 -16.53001 -15.95759 -15.56462 -15.25800 -14.52816 -14.43628 -14.35366 -13.60611 -13.31075 -13.18442 -12.70317 -12.36940 -12.01925 -11.96308 -11.68013 -11.54536 -11.05749 -11.01023 -10.90563 -10.59686 -10.44430 -10.30376 -10.09794 -9.73210 -9.45828 -9.09495 -9.01640 -8.28395 -7.54081 -5.95041 -3.97242 3.33685 3.40872 3.44880 3.95494 4.45054 4.64383 4.83231 4.94472 5.07368 5.30626 5.38005 5.40696 5.51688 5.58714 5.65665 5.72413 5.76991 5.85254 5.88812 5.89851 6.06834 6.11898 6.18357 6.31939 6.35838 6.52756 6.62632 6.74291 7.04570 7.41265 7.62192 7.71963 7.88734 7.98896 8.16258 8.49375 9.10552 9.66072 11.16389 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.043852 B = 0.005715 C = 0.005470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 638.357593 B = 4898.129149 C = 5117.902405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.359 6.359 3 C 0.100 3.900 4 H 0.055 0.945 5 C 0.033 3.967 6 N -0.525 5.525 7 C 0.064 3.936 8 C 0.028 3.972 9 C -0.521 4.521 10 H 0.053 0.947 11 C 0.058 3.942 12 N -0.893 5.893 13 Si 0.891 3.109 14 H -0.274 1.274 15 H -0.284 1.284 16 H -0.284 1.284 17 C 0.055 3.945 18 C -0.107 4.107 19 C -0.090 4.090 20 H 0.073 0.927 21 C -0.141 4.141 22 H 0.031 0.969 23 H 0.038 0.962 24 H 0.082 0.918 25 H 0.031 0.969 26 H 0.070 0.930 27 H 0.058 0.942 28 H 0.016 0.984 29 H 0.017 0.983 30 H 0.025 0.975 31 H 0.259 0.741 32 H 0.021 0.979 33 H 0.087 0.913 34 H 0.079 0.921 35 H 0.059 0.941 36 H 0.052 0.948 37 H 0.046 0.954 38 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.100 5.945 14.832 17.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.277 6.277 3 C 0.041 3.959 4 H 0.073 0.927 5 C -0.096 4.096 6 N -0.249 5.249 7 C -0.063 4.063 8 C -0.009 4.009 9 C -0.559 4.559 10 H 0.072 0.928 11 C -0.143 4.143 12 N -0.532 5.532 13 Si 0.719 3.281 14 H -0.198 1.198 15 H -0.211 1.211 16 H -0.210 1.210 17 C -0.073 4.073 18 C -0.144 4.144 19 C -0.108 4.108 20 H 0.091 0.909 21 C -0.199 4.199 22 H 0.050 0.950 23 H 0.057 0.943 24 H 0.100 0.900 25 H 0.049 0.951 26 H 0.088 0.912 27 H 0.076 0.924 28 H 0.035 0.965 29 H 0.035 0.965 30 H 0.044 0.956 31 H 0.069 0.931 32 H 0.039 0.961 33 H 0.105 0.895 34 H 0.097 0.903 35 H 0.078 0.922 36 H 0.071 0.929 37 H 0.065 0.935 38 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -6.095 5.155 14.806 16.821 hybrid contribution 0.201 1.304 -1.198 1.782 sum -5.894 6.458 13.608 16.175 Atomic orbital electron populations 1.22715 0.82255 1.02356 0.99103 1.88009 1.18295 1.26691 1.94742 1.22154 0.94253 0.84963 0.94504 0.92692 1.22543 0.98005 0.93872 0.95135 1.61909 1.09981 1.49818 1.03207 1.22322 1.00123 0.98687 0.85148 1.19094 0.95053 0.93313 0.93444 1.21246 1.36295 1.04944 0.93461 0.92843 1.24989 0.95621 0.95034 0.98667 1.69987 1.38024 1.10289 1.34929 0.86559 0.77674 0.78374 0.85512 1.19825 1.21057 1.21002 1.22114 0.91324 0.99272 0.94602 1.21582 0.97980 1.00452 0.94421 1.21289 0.94740 0.99755 0.95048 0.90911 1.21738 1.01055 1.01849 0.95228 0.95001 0.94326 0.89985 0.95089 0.91202 0.92382 0.96547 0.96469 0.95647 0.93089 0.96109 0.89497 0.90262 0.92198 0.92921 0.93492 0.91702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 10.82 101.05 1.09 1.48 16 2 O -0.36 -5.41 8.91 -35.23 -0.31 -5.72 16 3 C 0.10 1.36 2.41 -26.65 -0.06 1.30 16 4 H 0.06 0.63 7.79 -51.93 -0.40 0.23 16 5 C 0.03 0.53 5.11 -3.84 -0.02 0.51 16 6 N -0.52 -10.16 4.54 -234.67 -1.06 -11.23 16 7 C 0.06 1.42 4.90 -3.82 -0.02 1.40 16 8 C 0.03 0.76 4.91 -27.88 -0.14 0.62 16 9 C -0.52 -15.10 9.11 -34.44 -0.31 -15.41 16 10 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16 11 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 12 N -0.89 -27.39 13.29 55.43 0.74 -26.65 16 13 Si 0.89 21.98 29.54 -169.99 -5.02 16.96 16 14 H -0.27 -6.60 7.11 56.52 0.40 -6.19 16 15 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 16 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 17 C 0.05 0.98 5.29 -3.84 -0.02 0.96 16 18 C -0.11 -1.59 5.22 -26.65 -0.14 -1.73 16 19 C -0.09 -1.15 2.62 -90.49 -0.24 -1.39 16 20 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 21 C -0.14 -1.54 9.04 37.16 0.34 -1.21 16 22 H 0.03 0.31 8.09 -51.93 -0.42 -0.11 16 23 H 0.04 0.45 7.86 -51.93 -0.41 0.04 16 24 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 25 H 0.03 0.47 8.14 -51.93 -0.42 0.04 16 26 H 0.07 1.09 7.73 -51.93 -0.40 0.69 16 27 H 0.06 1.27 7.98 -51.93 -0.41 0.86 16 28 H 0.02 0.36 8.12 -51.93 -0.42 -0.06 16 29 H 0.02 0.48 6.44 -51.93 -0.33 0.15 16 30 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 32 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.09 1.76 6.22 -51.93 -0.32 1.43 16 34 H 0.08 1.32 7.80 -51.93 -0.40 0.92 16 35 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 36 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.06 0.77 7.62 -51.93 -0.40 0.38 16 LS Contribution 299.32 15.07 4.51 4.51 Total: -1.00 -31.19 299.32 -7.62 -38.81 By element: Atomic # 1 Polarization: 2.04 SS G_CDS: -6.85 Total: -4.81 kcal Atomic # 6 Polarization: -12.26 SS G_CDS: 0.38 Total: -11.87 kcal Atomic # 7 Polarization: -37.55 SS G_CDS: -0.33 Total: -37.88 kcal Atomic # 8 Polarization: -5.41 SS G_CDS: -0.31 Total: -5.72 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -31.19 -7.62 -38.81 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000221130564.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.821 kcal (2) G-P(sol) polarization free energy of solvation -31.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds