Wall clock time and date at job start Mon Mar 30 2020 03:18:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42901 * 113.99740 * 2 1 4 4 H 1.08995 * 109.50318 * 30.07989 * 3 2 1 5 5 C 1.53032 * 109.50320 * 269.99925 * 3 2 1 6 6 N 1.46848 * 109.52348 * 299.23727 * 5 3 2 7 7 C 1.46907 * 110.99958 * 174.16258 * 6 5 3 8 8 C 1.53000 * 109.46914 * 190.25994 * 7 6 5 9 9 C 1.50704 * 109.46662 * 179.97438 * 8 7 6 10 10 H 1.07992 * 120.00268 * 0.02562 * 9 8 7 11 11 C 1.37874 * 119.99556 * 179.97438 * 9 8 7 12 12 N 1.31512 * 120.00511 * 359.97438 * 11 9 8 13 13 Si 1.86806 * 119.99995 * 180.02562 * 11 9 8 14 14 H 1.48502 * 109.47005 * 359.97438 * 13 11 9 15 15 H 1.48497 * 109.47432 * 119.99523 * 13 11 9 16 16 H 1.48500 * 109.47102 * 240.00254 * 13 11 9 17 17 C 1.46842 * 111.20069 * 298.25721 * 6 5 3 18 18 C 1.53036 * 109.52190 * 61.74451 * 17 6 5 19 19 C 1.53123 * 109.27788 * 300.81892 * 18 17 6 20 20 H 1.09007 * 109.52268 * 297.75177 * 19 18 17 21 21 C 1.52999 * 109.52253 * 177.56250 * 19 18 17 22 22 H 1.09004 * 109.47019 * 299.99581 * 1 2 3 23 23 H 1.08997 * 109.46860 * 60.00319 * 1 2 3 24 24 H 1.09001 * 109.46618 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.46473 * 179.22280 * 5 3 2 26 26 H 1.08995 * 109.46713 * 59.25762 * 5 3 2 27 27 H 1.09004 * 109.46587 * 310.25525 * 7 6 5 28 28 H 1.08994 * 109.47194 * 70.25532 * 7 6 5 29 29 H 1.08996 * 109.47342 * 299.99473 * 8 7 6 30 30 H 1.09003 * 109.47499 * 60.00054 * 8 7 6 31 31 H 0.97003 * 120.00374 * 180.02562 * 12 11 9 32 32 H 1.09002 * 109.46766 * 301.72784 * 17 6 5 33 33 H 1.09000 * 109.46420 * 181.75518 * 17 6 5 34 34 H 1.09000 * 109.50632 * 60.76184 * 18 17 6 35 35 H 1.09006 * 109.50216 * 180.87978 * 18 17 6 36 36 H 1.08998 * 109.47352 * 60.00058 * 21 19 18 37 37 H 1.09000 * 109.46881 * 180.02562 * 21 19 18 38 38 H 1.09003 * 109.47137 * 299.99779 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3459 1.9995 0.5149 5 6 2.2180 1.7722 -1.4425 6 7 3.1288 0.8486 -2.1308 7 6 3.2429 1.1862 -3.5560 8 6 3.9857 0.0662 -4.2874 9 6 4.1022 0.4123 -5.7495 10 1 3.6883 1.3385 -6.1199 11 6 4.7381 -0.4531 -6.6141 12 7 5.2435 -1.5803 -6.1629 13 14 4.8833 -0.0240 -8.4264 14 1 4.2382 1.2900 -8.6771 15 1 6.3174 0.0480 -8.8049 16 1 4.2088 -1.0687 -9.2381 17 6 4.4488 0.8269 -1.4879 18 6 4.3076 0.3319 -0.0467 19 6 3.3623 1.2631 0.7174 20 1 3.7880 2.2660 0.7518 21 6 3.1692 0.7391 2.1418 22 1 -0.3633 0.5138 0.8901 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3632 -1.0277 -0.0005 25 1 2.6485 2.7736 -1.4418 26 1 1.2590 1.7899 -1.9603 27 1 2.2466 1.3007 -3.9831 28 1 3.7946 2.1198 -3.6652 29 1 4.9819 -0.0484 -3.8603 30 1 3.4339 -0.8675 -4.1783 31 1 5.6913 -2.1890 -6.7712 32 1 4.8689 1.8327 -1.4868 33 1 5.1100 0.1578 -2.0385 34 1 3.9005 -0.6793 -0.0474 35 1 5.2854 0.3307 0.4351 36 1 4.1329 0.7039 2.6498 37 1 2.4958 1.4023 2.6848 38 1 2.7409 -0.2626 2.1055 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000221130564.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:32 Heat of formation + Delta-G solvation = -79.334839 kcal Electronic energy + Delta-G solvation = -16545.638821 eV Core-core repulsion = 14000.629398 eV Total energy + Delta-G solvation = -2545.009423 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.64000 -37.86479 -35.83684 -34.72356 -31.79432 -31.15492 -28.62786 -27.31955 -25.89998 -24.12869 -23.22928 -21.77328 -20.50026 -18.61724 -17.21744 -16.77556 -16.57793 -16.27184 -15.94943 -15.82584 -14.81133 -14.62346 -14.42479 -14.19567 -13.98137 -13.54633 -13.32646 -13.03800 -12.88869 -12.68775 -12.47478 -12.40790 -12.13873 -11.87255 -11.67688 -11.49599 -11.41972 -11.24092 -10.96799 -10.54099 -10.28876 -9.05965 -8.20340 -6.32358 1.39314 1.40315 1.53597 2.39781 2.89797 3.12713 3.24073 3.77239 3.83903 4.00345 4.17304 4.36247 4.45598 4.47387 4.53409 4.55449 4.63518 4.64162 4.72691 4.84566 4.89070 4.90754 4.96310 5.02202 5.08493 5.20303 5.23756 5.38258 5.45890 5.57086 5.67577 5.78918 6.12844 6.29344 6.36240 6.56342 6.85229 7.36909 8.92266 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.043852 B = 0.005715 C = 0.005470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 638.357593 B = 4898.129149 C = 5117.902405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.387 6.387 3 C 0.100 3.900 4 H 0.087 0.913 5 C 0.031 3.969 6 N -0.542 5.542 7 C 0.081 3.919 8 C 0.038 3.962 9 C -0.545 4.545 10 H 0.060 0.940 11 C 0.001 3.999 12 N -0.933 5.933 13 Si 0.969 3.031 14 H -0.261 1.261 15 H -0.277 1.277 16 H -0.277 1.277 17 C 0.055 3.945 18 C -0.099 4.099 19 C -0.088 4.088 20 H 0.090 0.910 21 C -0.134 4.134 22 H 0.057 0.943 23 H 0.035 0.965 24 H 0.085 0.915 25 H 0.044 0.956 26 H 0.069 0.931 27 H 0.059 0.941 28 H 0.018 0.982 29 H -0.006 1.006 30 H -0.012 1.012 31 H 0.264 0.736 32 H 0.030 0.970 33 H 0.050 0.950 34 H 0.055 0.945 35 H 0.078 0.922 36 H 0.063 0.937 37 H 0.065 0.935 38 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.777 7.657 15.539 18.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.306 6.306 3 C 0.042 3.958 4 H 0.104 0.896 5 C -0.098 4.098 6 N -0.266 5.266 7 C -0.047 4.047 8 C 0.001 3.999 9 C -0.583 4.583 10 H 0.078 0.922 11 C -0.197 4.197 12 N -0.573 5.573 13 Si 0.793 3.207 14 H -0.185 1.185 15 H -0.202 1.202 16 H -0.203 1.203 17 C -0.072 4.072 18 C -0.137 4.137 19 C -0.106 4.106 20 H 0.108 0.892 21 C -0.191 4.191 22 H 0.076 0.924 23 H 0.054 0.946 24 H 0.103 0.897 25 H 0.062 0.938 26 H 0.088 0.912 27 H 0.077 0.923 28 H 0.037 0.963 29 H 0.012 0.988 30 H 0.006 0.994 31 H 0.073 0.927 32 H 0.049 0.951 33 H 0.069 0.931 34 H 0.074 0.926 35 H 0.097 0.903 36 H 0.082 0.918 37 H 0.084 0.916 38 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -6.787 6.877 15.534 18.294 hybrid contribution 0.401 0.734 -1.383 1.616 sum -6.387 7.611 14.151 17.291 Atomic orbital electron populations 1.22866 0.80788 1.03051 1.00161 1.87987 1.20105 1.27712 1.94801 1.22256 0.95344 0.85143 0.93075 0.89560 1.22686 0.96930 0.93757 0.96393 1.61815 1.11293 1.51581 1.01953 1.21949 0.99195 0.96535 0.87003 1.18905 0.93866 0.93443 0.93732 1.21656 1.36650 1.05404 0.94589 0.92198 1.25994 0.94887 0.94693 1.04147 1.70130 1.38664 1.11482 1.37023 0.85347 0.78018 0.78619 0.78720 1.18508 1.20213 1.20293 1.22085 0.90200 0.98991 0.95967 1.21514 0.99703 0.99698 0.92798 1.21329 0.93654 0.99956 0.95695 0.89224 1.21666 1.02103 1.01342 0.94031 0.92414 0.94646 0.89661 0.93750 0.91232 0.92279 0.96339 0.98808 0.99403 0.92731 0.95139 0.93144 0.92583 0.90333 0.91798 0.91563 0.93100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.60 10.82 113.37 1.23 1.83 16 2 O -0.39 -11.16 8.91 -148.98 -1.33 -12.49 16 3 C 0.10 2.49 2.41 30.65 0.07 2.56 16 4 H 0.09 1.64 7.79 -2.39 -0.02 1.63 16 5 C 0.03 0.92 5.11 86.32 0.44 1.36 16 6 N -0.54 -21.23 4.54 -896.37 -4.07 -25.29 16 7 C 0.08 3.65 4.90 86.30 0.42 4.08 16 8 C 0.04 2.14 4.91 29.85 0.15 2.29 16 9 C -0.54 -32.25 9.11 25.60 0.23 -32.02 16 10 H 0.06 3.39 7.74 -2.91 -0.02 3.36 16 11 C 0.00 0.03 5.46 84.65 0.46 0.50 16 12 N -0.93 -58.71 13.29 21.45 0.28 -58.43 16 13 Si 0.97 45.27 29.54 68.60 2.03 47.30 16 14 H -0.26 -11.59 7.11 99.48 0.71 -10.88 16 15 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 16 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 17 C 0.06 2.02 5.29 86.33 0.46 2.48 16 18 C -0.10 -2.91 5.22 30.65 0.16 -2.75 16 19 C -0.09 -2.03 2.62 -10.71 -0.03 -2.06 16 20 H 0.09 1.81 8.14 -2.38 -0.02 1.79 16 21 C -0.13 -2.53 9.04 71.98 0.65 -1.88 16 22 H 0.06 0.94 8.09 -2.39 -0.02 0.92 16 23 H 0.03 0.77 7.86 -2.39 -0.02 0.75 16 24 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 25 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 26 H 0.07 2.08 7.73 -2.39 -0.02 2.06 16 27 H 0.06 2.62 7.98 -2.39 -0.02 2.60 16 28 H 0.02 0.82 8.12 -2.39 -0.02 0.80 16 29 H -0.01 -0.38 6.44 -2.39 -0.02 -0.40 16 30 H -0.01 -0.79 8.14 -2.39 -0.02 -0.81 16 31 H 0.26 15.47 8.31 -92.71 -0.77 14.70 16 32 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 33 H 0.05 2.17 6.22 -2.39 -0.01 2.16 16 34 H 0.06 1.90 7.80 -2.39 -0.02 1.88 16 35 H 0.08 1.97 8.14 -2.38 -0.02 1.95 16 36 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 37 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 38 H 0.05 1.11 7.62 -2.39 -0.02 1.09 16 Total: -1.00 -68.77 299.32 2.15 -66.62 By element: Atomic # 1 Polarization: 4.91 SS G_CDS: 0.99 Total: 5.90 kcal Atomic # 6 Polarization: -27.86 SS G_CDS: 4.25 Total: -23.61 kcal Atomic # 7 Polarization: -79.94 SS G_CDS: -3.78 Total: -83.72 kcal Atomic # 8 Polarization: -11.16 SS G_CDS: -1.33 Total: -12.49 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 2.03 Total: 47.30 kcal Total: -68.77 2.15 -66.62 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000221130564.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.717 kcal (2) G-P(sol) polarization free energy of solvation -68.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds