Wall clock time and date at job start Mon Mar 30 2020 03:48:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09011 * 109.47054 * 2 1 4 4 O 1.42897 * 109.47110 * 120.00024 * 2 1 3 5 5 C 1.53000 * 109.47108 * 240.00273 * 2 1 3 6 6 C 1.53126 * 109.52038 * 179.97438 * 5 2 1 7 7 C 1.53034 * 109.27454 * 182.43766 * 6 5 2 8 8 N 1.46847 * 109.52486 * 59.18079 * 7 6 5 9 9 C 1.46906 * 110.99812 * 174.15668 * 8 7 6 10 10 C 1.52993 * 109.47124 * 314.21081 * 9 8 7 11 11 C 1.50701 * 109.46806 * 179.97438 * 10 9 8 12 12 H 1.08001 * 120.00459 * 359.97438 * 11 10 9 13 13 C 1.37881 * 119.99970 * 179.97438 * 11 10 9 14 14 N 1.31513 * 120.00156 * 0.02562 * 13 11 10 15 15 Si 1.86801 * 120.00164 * 180.02562 * 13 11 10 16 16 H 1.48503 * 109.46722 * 0.02562 * 15 13 11 17 17 H 1.48497 * 109.47201 * 120.00170 * 15 13 11 18 18 H 1.48496 * 109.47185 * 240.00239 * 15 13 11 19 19 C 1.46848 * 111.19788 * 298.25416 * 8 7 6 20 20 C 1.53035 * 109.52142 * 61.74047 * 19 8 7 21 21 H 1.09003 * 109.47211 * 179.97438 * 1 2 3 22 22 H 1.08998 * 109.47505 * 299.99862 * 1 2 3 23 23 H 1.09007 * 109.47231 * 60.00143 * 1 2 3 24 24 H 0.96699 * 114.00155 * 59.99925 * 4 2 1 25 25 H 1.09001 * 109.57316 * 300.15603 * 5 2 1 26 26 H 1.08997 * 109.50129 * 302.38068 * 6 5 2 27 27 H 1.09006 * 109.50177 * 62.49826 * 6 5 2 28 28 H 1.08999 * 109.45899 * 179.20018 * 7 6 5 29 29 H 1.09006 * 109.46754 * 299.15875 * 7 6 5 30 30 H 1.08999 * 109.46543 * 74.21464 * 9 8 7 31 31 H 1.09000 * 109.46689 * 194.20961 * 9 8 7 32 32 H 1.08995 * 109.47253 * 299.99744 * 10 9 8 33 33 H 1.09000 * 109.47436 * 60.00337 * 10 9 8 34 34 H 0.96997 * 120.00415 * 179.97438 * 14 13 11 35 35 H 1.09000 * 109.46321 * 301.72950 * 19 8 7 36 36 H 1.08999 * 109.45108 * 181.74821 * 19 8 7 37 37 H 1.08994 * 109.50219 * 180.87675 * 20 19 8 38 38 H 1.09010 * 109.53489 * 60.77934 * 20 19 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 8 2.0063 -0.6736 1.1667 5 6 2.0400 -0.7212 -1.2493 6 6 3.5712 -0.7213 -1.2507 7 6 4.0751 -1.3899 -2.5318 8 7 3.5667 -0.6589 -3.6995 9 6 4.1418 -1.1884 -4.9433 10 6 5.6497 -1.3783 -4.7676 11 6 6.2395 -1.9221 -6.0434 12 1 5.6025 -2.1135 -6.8942 13 6 7.5925 -2.1752 -6.1244 14 7 8.3682 -1.9425 -5.0882 15 14 8.3237 -2.8486 -7.7059 16 1 7.2476 -3.0210 -8.7146 17 1 9.3404 -1.8988 -8.2249 18 1 8.9644 -4.1606 -7.4357 19 6 2.0992 -0.6857 -3.7451 20 6 1.5363 0.0039 -2.5003 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 1.7210 -1.5952 1.2329 25 1 1.6753 -1.7484 -1.2524 26 1 3.9352 0.3052 -1.2085 27 1 3.9359 -1.2733 -0.3844 28 1 5.1650 -1.3789 -2.5426 29 1 3.7223 -2.4207 -2.5666 30 1 3.6797 -2.1474 -5.1778 31 1 3.9562 -0.4871 -5.7568 32 1 6.1118 -0.4194 -4.5331 33 1 5.8353 -2.0797 -3.9542 34 1 9.3199 -2.1209 -5.1450 35 1 1.7555 -1.7197 -3.7741 36 1 1.7542 -0.1629 -4.6372 37 1 0.4472 -0.0299 -2.5267 38 1 1.8678 1.0421 -2.4774 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000225791544.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:48:55 Heat of formation + Delta-G solvation = -72.136925 kcal Electronic energy + Delta-G solvation = -16247.229343 eV Core-core repulsion = 13702.532045 eV Total energy + Delta-G solvation = -2544.697299 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.33792 -37.17017 -34.13169 -32.64180 -30.79316 -30.37154 -28.47430 -25.30629 -23.66606 -22.60512 -21.55217 -20.10287 -19.35839 -16.72131 -16.40246 -15.58552 -15.05667 -14.61146 -14.35645 -14.16752 -13.87205 -13.57628 -13.23290 -12.61334 -12.35629 -12.24651 -12.07008 -11.61836 -11.37594 -11.08443 -10.95784 -10.90241 -10.76032 -10.51488 -10.45901 -10.12992 -9.84168 -9.71026 -9.24065 -9.02926 -8.33746 -7.64412 -5.99810 -4.02064 3.31318 3.38714 3.42765 4.26321 4.41112 4.55453 4.65836 4.84811 4.97255 5.17442 5.27119 5.36187 5.37071 5.53815 5.62890 5.71147 5.80635 5.87821 5.92939 6.00020 6.03329 6.16611 6.19465 6.35050 6.38171 6.47776 6.63739 6.68135 6.95360 7.55184 7.55896 7.65899 7.83354 7.87352 8.06473 8.43969 9.04875 9.61691 11.11634 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.059705 B = 0.004970 C = 0.004679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 468.860489 B = 5632.726779 C = 5982.778038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.106 3.894 3 H 0.098 0.902 4 O -0.563 6.563 5 C -0.119 4.119 6 C -0.105 4.105 7 C 0.050 3.950 8 N -0.539 5.539 9 C 0.062 3.938 10 C 0.020 3.980 11 C -0.521 4.521 12 H 0.054 0.946 13 C 0.058 3.942 14 N -0.894 5.894 15 Si 0.892 3.108 16 H -0.273 1.273 17 H -0.283 1.283 18 H -0.284 1.284 19 C 0.055 3.945 20 C -0.109 4.109 21 H 0.055 0.945 22 H 0.059 0.941 23 H 0.069 0.931 24 H 0.371 0.629 25 H 0.065 0.935 26 H 0.068 0.932 27 H 0.066 0.934 28 H 0.094 0.906 29 H 0.023 0.977 30 H 0.018 0.982 31 H 0.061 0.939 32 H 0.025 0.975 33 H 0.020 0.980 34 H 0.260 0.740 35 H 0.024 0.976 36 H 0.069 0.931 37 H 0.062 0.938 38 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.930 2.282 8.731 17.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C 0.047 3.953 3 H 0.115 0.885 4 O -0.368 6.368 5 C -0.137 4.137 6 C -0.143 4.143 7 C -0.077 4.077 8 N -0.264 5.264 9 C -0.064 4.064 10 C -0.017 4.017 11 C -0.560 4.560 12 H 0.073 0.927 13 C -0.143 4.143 14 N -0.533 5.533 15 Si 0.720 3.280 16 H -0.198 1.198 17 H -0.210 1.210 18 H -0.210 1.210 19 C -0.073 4.073 20 C -0.147 4.147 21 H 0.074 0.926 22 H 0.078 0.922 23 H 0.088 0.912 24 H 0.218 0.782 25 H 0.084 0.916 26 H 0.087 0.913 27 H 0.085 0.915 28 H 0.112 0.888 29 H 0.041 0.959 30 H 0.036 0.964 31 H 0.080 0.920 32 H 0.043 0.957 33 H 0.039 0.961 34 H 0.070 0.930 35 H 0.042 0.958 36 H 0.087 0.913 37 H 0.081 0.919 38 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -14.334 3.346 8.934 17.218 hybrid contribution -0.085 -1.805 -1.182 2.159 sum -14.419 1.541 7.752 16.443 Atomic orbital electron populations 1.22557 0.96903 1.02318 1.02586 1.21979 0.92341 0.96754 0.84193 0.88452 1.86584 1.77353 1.28851 1.44014 1.21931 0.97405 0.99484 0.94923 1.21575 0.93472 1.01976 0.97280 1.22202 1.01898 0.94104 0.89542 1.62054 1.04961 1.55604 1.03807 1.22306 0.98626 0.96115 0.89399 1.19250 0.87899 0.97485 0.97067 1.21232 0.92966 1.42952 0.98846 0.92730 1.24995 0.97243 0.95711 0.96366 1.69973 1.04942 1.48758 1.29610 0.86538 0.79171 0.78625 0.83678 1.19775 1.20960 1.21042 1.22025 0.89387 0.98197 0.97717 1.21629 0.99001 1.00351 0.93680 0.92557 0.92187 0.91233 0.78184 0.91636 0.91328 0.91500 0.88804 0.95891 0.96398 0.92022 0.95676 0.96147 0.93034 0.95777 0.91273 0.91935 0.91073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.56 9.19 37.16 0.34 -1.22 16 2 C 0.11 1.11 3.17 -26.73 -0.08 1.02 16 3 H 0.10 1.08 8.14 -51.92 -0.42 0.66 16 4 O -0.56 -6.28 12.72 -35.23 -0.45 -6.73 16 5 C -0.12 -1.41 2.02 -90.50 -0.18 -1.59 16 6 C -0.11 -1.54 5.20 -26.65 -0.14 -1.68 16 7 C 0.05 0.90 4.85 -3.84 -0.02 0.89 16 8 N -0.54 -10.06 4.81 -234.67 -1.13 -11.19 16 9 C 0.06 1.35 5.21 -3.82 -0.02 1.33 16 10 C 0.02 0.53 4.22 -27.89 -0.12 0.41 16 11 C -0.52 -14.92 9.11 -34.44 -0.31 -15.23 16 12 H 0.05 1.52 7.74 -52.49 -0.41 1.12 16 13 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 14 N -0.89 -27.00 13.29 55.43 0.74 -26.26 16 15 Si 0.89 21.78 29.54 -169.99 -5.02 16.76 16 16 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 17 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 18 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 19 C 0.06 0.83 5.42 -3.83 -0.02 0.81 16 20 C -0.11 -1.32 4.96 -26.65 -0.13 -1.45 16 21 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 22 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 23 H 0.07 0.55 6.50 -51.92 -0.34 0.21 16 24 H 0.37 2.89 9.05 45.56 0.41 3.30 16 25 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 26 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 27 H 0.07 0.94 7.77 -51.93 -0.40 0.54 16 28 H 0.09 1.94 5.81 -51.93 -0.30 1.64 16 29 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.02 0.39 8.08 -51.93 -0.42 -0.03 16 31 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 32 H 0.02 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.02 0.56 6.21 -51.93 -0.32 0.24 16 34 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 35 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.07 1.00 8.12 -51.93 -0.42 0.58 16 37 H 0.06 0.62 6.58 -51.93 -0.34 0.28 16 38 H 0.07 0.89 8.14 -51.92 -0.42 0.47 16 LS Contribution 296.07 15.07 4.46 4.46 Total: -1.00 -30.79 296.07 -8.09 -38.88 By element: Atomic # 1 Polarization: 5.11 SS G_CDS: -5.90 Total: -0.80 kcal Atomic # 6 Polarization: -14.34 SS G_CDS: -0.79 Total: -15.12 kcal Atomic # 7 Polarization: -37.06 SS G_CDS: -0.39 Total: -37.45 kcal Atomic # 8 Polarization: -6.28 SS G_CDS: -0.45 Total: -6.73 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -30.79 -8.09 -38.88 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000225791544.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.258 kcal (2) G-P(sol) polarization free energy of solvation -30.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds