Wall clock time and date at job start Mon Mar 30 2020 03:48:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09011 * 109.47054 * 2 1 4 4 O 1.42897 * 109.47110 * 120.00024 * 2 1 3 5 5 C 1.53000 * 109.47108 * 240.00273 * 2 1 3 6 6 C 1.53126 * 109.52038 * 179.97438 * 5 2 1 7 7 C 1.53034 * 109.27454 * 182.43766 * 6 5 2 8 8 N 1.46847 * 109.52486 * 59.18079 * 7 6 5 9 9 C 1.46906 * 110.99812 * 174.15668 * 8 7 6 10 10 C 1.52993 * 109.47124 * 314.21081 * 9 8 7 11 11 C 1.50701 * 109.46806 * 179.97438 * 10 9 8 12 12 H 1.08001 * 120.00459 * 359.97438 * 11 10 9 13 13 C 1.37881 * 119.99970 * 179.97438 * 11 10 9 14 14 N 1.31513 * 120.00156 * 0.02562 * 13 11 10 15 15 Si 1.86801 * 120.00164 * 180.02562 * 13 11 10 16 16 H 1.48503 * 109.46722 * 0.02562 * 15 13 11 17 17 H 1.48497 * 109.47201 * 120.00170 * 15 13 11 18 18 H 1.48496 * 109.47185 * 240.00239 * 15 13 11 19 19 C 1.46848 * 111.19788 * 298.25416 * 8 7 6 20 20 C 1.53035 * 109.52142 * 61.74047 * 19 8 7 21 21 H 1.09003 * 109.47211 * 179.97438 * 1 2 3 22 22 H 1.08998 * 109.47505 * 299.99862 * 1 2 3 23 23 H 1.09007 * 109.47231 * 60.00143 * 1 2 3 24 24 H 0.96699 * 114.00155 * 59.99925 * 4 2 1 25 25 H 1.09001 * 109.57316 * 300.15603 * 5 2 1 26 26 H 1.08997 * 109.50129 * 302.38068 * 6 5 2 27 27 H 1.09006 * 109.50177 * 62.49826 * 6 5 2 28 28 H 1.08999 * 109.45899 * 179.20018 * 7 6 5 29 29 H 1.09006 * 109.46754 * 299.15875 * 7 6 5 30 30 H 1.08999 * 109.46543 * 74.21464 * 9 8 7 31 31 H 1.09000 * 109.46689 * 194.20961 * 9 8 7 32 32 H 1.08995 * 109.47253 * 299.99744 * 10 9 8 33 33 H 1.09000 * 109.47436 * 60.00337 * 10 9 8 34 34 H 0.96997 * 120.00415 * 179.97438 * 14 13 11 35 35 H 1.09000 * 109.46321 * 301.72950 * 19 8 7 36 36 H 1.08999 * 109.45108 * 181.74821 * 19 8 7 37 37 H 1.08994 * 109.50219 * 180.87675 * 20 19 8 38 38 H 1.09010 * 109.53489 * 60.77934 * 20 19 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 8 2.0063 -0.6736 1.1667 5 6 2.0400 -0.7212 -1.2493 6 6 3.5712 -0.7213 -1.2507 7 6 4.0751 -1.3899 -2.5318 8 7 3.5667 -0.6589 -3.6995 9 6 4.1418 -1.1884 -4.9433 10 6 5.6497 -1.3783 -4.7676 11 6 6.2395 -1.9221 -6.0434 12 1 5.6025 -2.1135 -6.8942 13 6 7.5925 -2.1752 -6.1244 14 7 8.3682 -1.9425 -5.0882 15 14 8.3237 -2.8486 -7.7059 16 1 7.2476 -3.0210 -8.7146 17 1 9.3404 -1.8988 -8.2249 18 1 8.9644 -4.1606 -7.4357 19 6 2.0992 -0.6857 -3.7451 20 6 1.5363 0.0039 -2.5003 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 1.7210 -1.5952 1.2329 25 1 1.6753 -1.7484 -1.2524 26 1 3.9352 0.3052 -1.2085 27 1 3.9359 -1.2733 -0.3844 28 1 5.1650 -1.3789 -2.5426 29 1 3.7223 -2.4207 -2.5666 30 1 3.6797 -2.1474 -5.1778 31 1 3.9562 -0.4871 -5.7568 32 1 6.1118 -0.4194 -4.5331 33 1 5.8353 -2.0797 -3.9542 34 1 9.3199 -2.1209 -5.1450 35 1 1.7555 -1.7197 -3.7741 36 1 1.7542 -0.1629 -4.6372 37 1 0.4472 -0.0299 -2.5267 38 1 1.8678 1.0421 -2.4774 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000225791544.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:48:51 Heat of formation + Delta-G solvation = -94.391898 kcal Electronic energy + Delta-G solvation = -16248.194391 eV Core-core repulsion = 13702.532045 eV Total energy + Delta-G solvation = -2545.662347 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -40.49990 -38.30154 -35.73709 -34.38882 -31.98869 -31.79880 -29.90499 -26.88551 -25.28248 -23.85378 -22.75822 -21.52543 -20.71945 -18.65634 -17.51684 -16.71839 -16.56737 -16.21275 -15.80927 -15.48114 -15.09336 -14.75487 -14.53945 -14.12058 -14.08348 -13.34259 -13.18851 -12.97169 -12.92634 -12.59424 -12.41732 -12.35921 -12.14277 -11.93795 -11.82449 -11.48824 -11.38192 -11.24041 -11.00419 -10.61124 -10.49230 -9.16652 -8.21929 -6.33641 1.39135 1.39792 1.53161 2.39151 3.09158 3.11520 3.49360 3.70295 3.84744 3.99467 4.25102 4.32200 4.36916 4.39682 4.53197 4.53471 4.62455 4.65988 4.79273 4.90480 4.95723 4.99648 5.03109 5.04526 5.15599 5.18035 5.29861 5.39530 5.42838 5.51351 5.64726 5.77039 6.08252 6.32405 6.36836 6.83174 6.90643 7.35706 8.90373 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.059705 B = 0.004970 C = 0.004679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 468.860489 B = 5632.726779 C = 5982.778038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.111 3.889 3 H 0.089 0.911 4 O -0.580 6.580 5 C -0.111 4.111 6 C -0.098 4.098 7 C 0.054 3.946 8 N -0.549 5.549 9 C 0.077 3.923 10 C 0.030 3.970 11 C -0.546 4.546 12 H 0.060 0.940 13 C 0.002 3.998 14 N -0.932 5.932 15 Si 0.968 3.032 16 H -0.261 1.261 17 H -0.277 1.277 18 H -0.277 1.277 19 C 0.051 3.949 20 C -0.102 4.102 21 H 0.066 0.934 22 H 0.062 0.938 23 H 0.078 0.922 24 H 0.386 0.614 25 H 0.074 0.926 26 H 0.057 0.943 27 H 0.070 0.930 28 H 0.054 0.946 29 H 0.021 0.979 30 H 0.018 0.982 31 H 0.063 0.937 32 H -0.009 1.009 33 H -0.001 1.001 34 H 0.264 0.736 35 H 0.028 0.972 36 H 0.077 0.923 37 H 0.096 0.904 38 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.846 2.033 8.350 18.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.052 3.948 3 H 0.107 0.893 4 O -0.388 6.388 5 C -0.129 4.129 6 C -0.135 4.135 7 C -0.074 4.074 8 N -0.274 5.274 9 C -0.051 4.051 10 C -0.008 4.008 11 C -0.584 4.584 12 H 0.078 0.922 13 C -0.196 4.196 14 N -0.572 5.572 15 Si 0.792 3.208 16 H -0.185 1.185 17 H -0.203 1.203 18 H -0.203 1.203 19 C -0.076 4.076 20 C -0.140 4.140 21 H 0.085 0.915 22 H 0.081 0.919 23 H 0.097 0.903 24 H 0.235 0.765 25 H 0.093 0.907 26 H 0.075 0.925 27 H 0.089 0.911 28 H 0.072 0.928 29 H 0.039 0.961 30 H 0.036 0.964 31 H 0.082 0.918 32 H 0.010 0.990 33 H 0.018 0.982 34 H 0.073 0.927 35 H 0.046 0.954 36 H 0.096 0.904 37 H 0.114 0.886 38 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -16.277 3.093 8.562 18.649 hybrid contribution 0.528 -1.726 -1.013 2.070 sum -15.749 1.367 7.548 17.518 Atomic orbital electron populations 1.22488 0.94769 1.03231 1.03203 1.21897 0.93858 0.95948 0.83055 0.89316 1.86555 1.77873 1.30181 1.44157 1.21879 0.94796 1.00366 0.95910 1.21491 0.96009 1.00762 0.95287 1.22101 0.99645 0.94513 0.91138 1.62026 1.07613 1.55297 1.02464 1.21980 0.95591 0.96336 0.91148 1.19064 0.91040 0.94913 0.95743 1.21659 0.93729 1.43318 0.99702 0.92202 1.25975 0.97705 0.95784 1.00173 1.70112 1.05418 1.49628 1.32028 0.85359 0.78404 0.77969 0.79063 1.18538 1.20275 1.20279 1.22191 0.86557 0.99017 0.99876 1.21622 1.00784 0.99593 0.91955 0.91490 0.91869 0.90340 0.76510 0.90735 0.92463 0.91090 0.92777 0.96118 0.96358 0.91820 0.99037 0.98239 0.92713 0.95406 0.90431 0.88616 0.91431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.40 9.19 71.98 0.66 -1.74 16 2 C 0.11 2.06 3.17 30.59 0.10 2.16 16 3 H 0.09 1.81 8.14 -2.38 -0.02 1.79 16 4 O -0.58 -11.81 12.72 -148.98 -1.89 -13.70 16 5 C -0.11 -2.40 2.02 -10.71 -0.02 -2.42 16 6 C -0.10 -2.84 5.20 30.65 0.16 -2.68 16 7 C 0.05 2.00 4.85 86.32 0.42 2.42 16 8 N -0.55 -20.62 4.81 -896.36 -4.31 -24.93 16 9 C 0.08 3.40 5.21 86.30 0.45 3.85 16 10 C 0.03 1.63 4.22 29.85 0.13 1.76 16 11 C -0.55 -31.86 9.11 25.60 0.23 -31.62 16 12 H 0.06 3.35 7.74 -2.91 -0.02 3.32 16 13 C 0.00 0.09 5.46 84.66 0.46 0.56 16 14 N -0.93 -57.73 13.29 21.45 0.28 -57.44 16 15 Si 0.97 44.82 29.54 68.60 2.03 46.85 16 16 H -0.26 -11.52 7.11 99.48 0.71 -10.81 16 17 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 18 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 19 C 0.05 1.45 5.42 86.32 0.47 1.92 16 20 C -0.10 -2.19 4.96 30.64 0.15 -2.04 16 21 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 22 H 0.06 0.83 8.14 -2.39 -0.02 0.82 16 23 H 0.08 0.92 6.50 -2.38 -0.02 0.90 16 24 H 0.39 5.12 9.05 -74.06 -0.67 4.45 16 25 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 26 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 27 H 0.07 1.99 7.77 -2.38 -0.02 1.97 16 28 H 0.05 2.41 5.81 -2.39 -0.01 2.39 16 29 H 0.02 0.76 8.14 -2.38 -0.02 0.74 16 30 H 0.02 0.80 8.08 -2.39 -0.02 0.78 16 31 H 0.06 2.76 8.14 -2.39 -0.02 2.74 16 32 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 33 H 0.00 -0.04 6.21 -2.39 -0.01 -0.05 16 34 H 0.26 15.27 8.31 -92.71 -0.77 14.50 16 35 H 0.03 0.78 8.14 -2.39 -0.02 0.76 16 36 H 0.08 2.07 8.12 -2.39 -0.02 2.05 16 37 H 0.10 1.50 6.58 -2.39 -0.02 1.48 16 38 H 0.07 1.54 8.14 -2.38 -0.02 1.52 16 Total: -1.00 -67.43 296.07 -0.34 -67.77 By element: Atomic # 1 Polarization: 8.96 SS G_CDS: 0.35 Total: 9.30 kcal Atomic # 6 Polarization: -31.05 SS G_CDS: 3.21 Total: -27.84 kcal Atomic # 7 Polarization: -78.35 SS G_CDS: -4.02 Total: -82.37 kcal Atomic # 8 Polarization: -11.81 SS G_CDS: -1.89 Total: -13.70 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.85 kcal Total: -67.43 -0.34 -67.77 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000225791544.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.625 kcal (2) G-P(sol) polarization free energy of solvation -67.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds