Wall clock time and date at job start Mon Mar 30 2020 03:52:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.47278 * 2 1 4 4 O 1.42898 * 109.47306 * 239.99822 * 2 1 3 5 5 C 1.52999 * 109.46698 * 119.99730 * 2 1 3 6 6 C 1.53003 * 109.46985 * 184.99977 * 5 2 1 7 7 C 1.52994 * 109.47285 * 180.02562 * 6 5 2 8 8 N 1.46904 * 109.47494 * 180.02562 * 7 6 5 9 9 C 1.46901 * 111.00085 * 180.02562 * 8 7 6 10 10 C 1.52998 * 109.46688 * 185.35302 * 9 8 7 11 11 C 1.50691 * 115.55424 * 65.04929 * 10 9 8 12 12 H 1.08003 * 119.99945 * 265.44436 * 11 10 9 13 13 C 1.37876 * 120.00363 * 85.44189 * 11 10 9 14 14 N 1.31510 * 120.00074 * 353.60004 * 13 11 10 15 15 Si 1.86806 * 120.00225 * 173.59823 * 13 11 10 16 16 H 1.48498 * 109.46772 * 359.97438 * 15 13 11 17 17 H 1.48498 * 109.47215 * 120.00053 * 15 13 11 18 18 H 1.48498 * 109.46795 * 240.00271 * 15 13 11 19 19 C 1.53006 * 117.49676 * 279.37256 * 10 9 8 20 20 C 1.53008 * 117.49257 * 210.71681 * 10 9 8 21 21 H 1.08991 * 109.47610 * 300.00294 * 1 2 3 22 22 H 1.09004 * 109.46558 * 60.00410 * 1 2 3 23 23 H 1.08999 * 109.46984 * 179.97438 * 1 2 3 24 24 H 0.96697 * 114.00362 * 300.00519 * 4 2 1 25 25 H 1.09003 * 109.46908 * 65.00317 * 5 2 1 26 26 H 1.09002 * 109.47536 * 304.99933 * 5 2 1 27 27 H 1.09003 * 109.47019 * 60.00408 * 6 5 2 28 28 H 1.08999 * 109.47441 * 300.00181 * 6 5 2 29 29 H 1.09005 * 109.47098 * 59.99684 * 7 6 5 30 30 H 1.09002 * 109.47265 * 299.99975 * 7 6 5 31 31 H 1.00903 * 110.99898 * 303.95343 * 8 7 6 32 32 H 1.09007 * 109.46709 * 305.34820 * 9 8 7 33 33 H 1.08998 * 109.47421 * 65.35033 * 9 8 7 34 34 H 0.97001 * 120.00709 * 179.97438 * 14 13 11 35 35 H 1.08998 * 117.49996 * 0.02562 * 19 10 9 36 36 H 1.08999 * 117.49462 * 145.02515 * 19 10 9 37 37 H 1.09007 * 117.49303 * 214.97567 * 20 10 9 38 38 H 1.08995 * 117.49957 * 359.97438 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0064 -0.6737 -1.1667 5 6 2.0399 -0.7212 1.2493 6 6 3.5648 -0.6133 1.3138 7 6 4.0748 -1.3350 2.5627 8 7 5.5388 -1.2309 2.6250 9 6 6.0651 -1.9146 3.8139 10 6 7.5723 -1.6722 3.9161 11 6 7.9861 -0.2430 4.1545 12 1 8.2453 0.3906 3.3192 13 6 8.0337 0.2559 5.4389 14 7 7.5990 -0.4726 6.4439 15 14 8.7159 1.9666 5.7519 16 1 9.1365 2.5749 4.4641 17 1 7.6674 2.8104 6.3795 18 1 9.8865 1.8740 6.6608 19 6 8.4874 -2.5371 3.0469 20 6 8.4223 -2.7704 4.5584 21 1 -0.3634 0.5138 0.8899 22 1 -0.3632 0.5138 -0.8901 23 1 -0.3633 -1.0277 -0.0005 24 1 1.7210 -1.5952 -1.2329 25 1 1.7515 -1.7715 1.2056 26 1 1.6053 -0.2617 2.1370 27 1 3.8531 0.4370 1.3575 28 1 3.9994 -1.0728 0.4261 29 1 3.7863 -2.3853 2.5187 30 1 3.6402 -0.8758 3.4506 31 1 5.9630 -1.5913 1.7835 32 1 5.5731 -1.5245 4.7049 33 1 5.8738 -2.9846 3.7322 34 1 7.6328 -0.1218 7.3476 35 1 8.0157 -3.2785 2.4020 36 1 9.3890 -2.0724 2.6479 37 1 9.2812 -2.4589 5.1531 38 1 7.9078 -3.6652 4.9085 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000227728821.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:52:32 Heat of formation + Delta-G solvation = -48.564994 kcal Electronic energy + Delta-G solvation = -15731.377116 eV Core-core repulsion = 13187.701973 eV Total energy + Delta-G solvation = -2543.675143 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -38.16537 -37.00325 -35.02592 -32.48588 -31.76529 -30.16941 -26.39370 -25.24195 -23.31027 -21.54544 -21.15716 -20.80954 -18.87683 -16.48329 -16.21757 -15.93675 -15.03359 -14.55038 -14.41976 -14.00071 -13.65609 -13.22878 -13.14404 -12.77252 -12.34017 -11.95762 -11.55002 -11.49993 -11.14350 -11.08693 -10.90218 -10.75906 -10.59156 -10.42114 -10.36551 -10.13536 -9.97667 -9.34983 -8.72882 -8.31761 -7.99848 -7.45802 -5.90366 -3.91309 3.36778 3.44627 3.50009 4.23177 4.52160 4.57369 4.88210 4.97090 5.06786 5.24450 5.39704 5.43994 5.48827 5.55585 5.71678 5.76854 5.87180 5.97135 6.03600 6.10203 6.22819 6.38971 6.48078 6.55534 6.58522 6.71199 6.79487 6.95918 7.17232 7.52883 7.53204 7.64968 8.02775 8.04678 8.25364 8.62608 9.08113 9.71518 11.19756 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.028863 B = 0.005312 C = 0.004830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.866004 B = 5270.138777 C = 5796.117405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.100 3.900 3 H 0.099 0.901 4 O -0.563 6.563 5 C -0.149 4.149 6 C -0.112 4.112 7 C 0.061 3.939 8 N -0.670 5.670 9 C 0.108 3.892 10 C 0.051 3.949 11 C -0.467 4.467 12 H 0.060 0.940 13 C 0.066 3.934 14 N -0.887 5.887 15 Si 0.888 3.112 16 H -0.273 1.273 17 H -0.286 1.286 18 H -0.287 1.287 19 C -0.216 4.216 20 C -0.159 4.159 21 H 0.065 0.935 22 H 0.060 0.940 23 H 0.056 0.944 24 H 0.371 0.629 25 H 0.061 0.939 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.063 0.937 29 H 0.012 0.988 30 H 0.065 0.935 31 H 0.329 0.671 32 H 0.075 0.925 33 H -0.008 1.008 34 H 0.256 0.744 35 H 0.059 0.941 36 H 0.076 0.924 37 H 0.081 0.919 38 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.706 -2.252 -9.383 15.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C 0.041 3.959 3 H 0.117 0.883 4 O -0.368 6.368 5 C -0.188 4.188 6 C -0.150 4.150 7 C -0.069 4.069 8 N -0.300 5.300 9 C -0.021 4.021 10 C 0.051 3.949 11 C -0.505 4.505 12 H 0.078 0.922 13 C -0.136 4.136 14 N -0.525 5.525 15 Si 0.716 3.284 16 H -0.198 1.198 17 H -0.213 1.213 18 H -0.213 1.213 19 C -0.253 4.253 20 C -0.197 4.197 21 H 0.084 0.916 22 H 0.079 0.921 23 H 0.075 0.925 24 H 0.218 0.782 25 H 0.080 0.920 26 H 0.090 0.910 27 H 0.089 0.911 28 H 0.082 0.918 29 H 0.030 0.970 30 H 0.084 0.916 31 H 0.146 0.854 32 H 0.093 0.907 33 H 0.010 0.990 34 H 0.066 0.934 35 H 0.078 0.922 36 H 0.095 0.905 37 H 0.099 0.901 38 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -11.468 -1.033 -8.975 14.599 hybrid contribution -0.093 -0.643 0.342 0.735 sum -11.561 -1.676 -8.633 14.526 Atomic orbital electron populations 1.22515 0.96855 1.02318 1.02597 1.21964 0.92307 0.97006 0.84601 0.88338 1.86599 1.77289 1.28813 1.44116 1.22283 0.97348 1.00719 0.98407 1.21495 0.93480 1.02089 0.97975 1.21928 0.90227 0.96800 0.97961 1.60261 1.02690 1.61604 1.05422 1.21535 0.96883 0.91461 0.92238 1.18843 0.87342 0.92220 0.96521 1.20358 1.43921 0.94267 0.91938 0.92202 1.24942 0.95264 0.97044 0.96304 1.70021 1.46394 1.37008 0.99110 0.86601 0.78626 0.84998 0.78146 1.19764 1.21261 1.21293 1.22988 1.03920 1.04914 0.93481 1.22518 1.03988 1.00252 0.92964 0.91553 0.92056 0.92500 0.78202 0.92032 0.91012 0.91070 0.91841 0.96960 0.91631 0.85440 0.90681 0.98972 0.93445 0.92245 0.90521 0.90079 0.92218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.48 9.53 37.16 0.35 -1.12 16 2 C 0.10 1.00 3.59 -26.73 -0.10 0.90 16 3 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 4 O -0.56 -6.13 12.88 -35.23 -0.45 -6.58 16 5 C -0.15 -1.60 4.89 -26.73 -0.13 -1.73 16 6 C -0.11 -1.55 5.37 -26.73 -0.14 -1.70 16 7 C 0.06 1.00 5.68 -3.82 -0.02 0.98 16 8 N -0.67 -13.54 6.38 -113.78 -0.73 -14.26 16 9 C 0.11 2.47 5.51 -3.82 -0.02 2.45 16 10 C 0.05 1.29 1.55 -155.66 -0.24 1.05 16 11 C -0.47 -12.99 8.74 -34.45 -0.30 -13.29 16 12 H 0.06 1.70 7.82 -52.48 -0.41 1.29 16 13 C 0.07 1.84 5.39 -17.82 -0.10 1.75 16 14 N -0.89 -25.61 12.92 55.43 0.72 -24.90 16 15 Si 0.89 21.75 29.54 -169.99 -5.02 16.73 16 16 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 17 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 18 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 19 C -0.22 -4.80 9.96 -26.69 -0.27 -5.06 16 20 C -0.16 -3.83 9.41 -26.69 -0.25 -4.08 16 21 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 22 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 23 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 24 H 0.37 2.71 9.05 45.56 0.41 3.12 16 25 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 26 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 28 H 0.06 0.89 7.82 -51.93 -0.41 0.48 16 29 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 30 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 31 H 0.33 6.26 8.79 -39.29 -0.35 5.91 16 32 H 0.07 1.92 8.13 -51.93 -0.42 1.50 16 33 H -0.01 -0.17 8.09 -51.93 -0.42 -0.59 16 34 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 35 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 36 H 0.08 1.70 8.14 -51.93 -0.42 1.27 16 37 H 0.08 2.08 8.14 -51.92 -0.42 1.65 16 38 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 LS Contribution 316.50 15.07 4.77 4.77 Total: -1.00 -29.88 316.50 -8.15 -38.03 By element: Atomic # 1 Polarization: 12.29 SS G_CDS: -6.22 Total: 6.07 kcal Atomic # 6 Polarization: -18.65 SS G_CDS: -1.21 Total: -19.86 kcal Atomic # 7 Polarization: -39.15 SS G_CDS: -0.01 Total: -39.16 kcal Atomic # 8 Polarization: -6.13 SS G_CDS: -0.45 Total: -6.58 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -29.88 -8.15 -38.03 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227728821.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.531 kcal (2) G-P(sol) polarization free energy of solvation -29.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds