Wall clock time and date at job start Mon Mar 30 2020 03:52:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.47278 * 2 1 4 4 O 1.42898 * 109.47306 * 239.99822 * 2 1 3 5 5 C 1.52999 * 109.46698 * 119.99730 * 2 1 3 6 6 C 1.53003 * 109.46985 * 184.99977 * 5 2 1 7 7 C 1.52994 * 109.47285 * 180.02562 * 6 5 2 8 8 N 1.46904 * 109.47494 * 180.02562 * 7 6 5 9 9 C 1.46901 * 111.00085 * 180.02562 * 8 7 6 10 10 C 1.52998 * 109.46688 * 185.35302 * 9 8 7 11 11 C 1.50691 * 115.55424 * 65.04929 * 10 9 8 12 12 H 1.08003 * 119.99945 * 265.44436 * 11 10 9 13 13 C 1.37876 * 120.00363 * 85.44189 * 11 10 9 14 14 N 1.31510 * 120.00074 * 353.60004 * 13 11 10 15 15 Si 1.86806 * 120.00225 * 173.59823 * 13 11 10 16 16 H 1.48498 * 109.46772 * 359.97438 * 15 13 11 17 17 H 1.48498 * 109.47215 * 120.00053 * 15 13 11 18 18 H 1.48498 * 109.46795 * 240.00271 * 15 13 11 19 19 C 1.53006 * 117.49676 * 279.37256 * 10 9 8 20 20 C 1.53008 * 117.49257 * 210.71681 * 10 9 8 21 21 H 1.08991 * 109.47610 * 300.00294 * 1 2 3 22 22 H 1.09004 * 109.46558 * 60.00410 * 1 2 3 23 23 H 1.08999 * 109.46984 * 179.97438 * 1 2 3 24 24 H 0.96697 * 114.00362 * 300.00519 * 4 2 1 25 25 H 1.09003 * 109.46908 * 65.00317 * 5 2 1 26 26 H 1.09002 * 109.47536 * 304.99933 * 5 2 1 27 27 H 1.09003 * 109.47019 * 60.00408 * 6 5 2 28 28 H 1.08999 * 109.47441 * 300.00181 * 6 5 2 29 29 H 1.09005 * 109.47098 * 59.99684 * 7 6 5 30 30 H 1.09002 * 109.47265 * 299.99975 * 7 6 5 31 31 H 1.00903 * 110.99898 * 303.95343 * 8 7 6 32 32 H 1.09007 * 109.46709 * 305.34820 * 9 8 7 33 33 H 1.08998 * 109.47421 * 65.35033 * 9 8 7 34 34 H 0.97001 * 120.00709 * 179.97438 * 14 13 11 35 35 H 1.08998 * 117.49996 * 0.02562 * 19 10 9 36 36 H 1.08999 * 117.49462 * 145.02515 * 19 10 9 37 37 H 1.09007 * 117.49303 * 214.97567 * 20 10 9 38 38 H 1.08995 * 117.49957 * 359.97438 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0064 -0.6737 -1.1667 5 6 2.0399 -0.7212 1.2493 6 6 3.5648 -0.6133 1.3138 7 6 4.0748 -1.3350 2.5627 8 7 5.5388 -1.2309 2.6250 9 6 6.0651 -1.9146 3.8139 10 6 7.5723 -1.6722 3.9161 11 6 7.9861 -0.2430 4.1545 12 1 8.2453 0.3906 3.3192 13 6 8.0337 0.2559 5.4389 14 7 7.5990 -0.4726 6.4439 15 14 8.7159 1.9666 5.7519 16 1 9.1365 2.5749 4.4641 17 1 7.6674 2.8104 6.3795 18 1 9.8865 1.8740 6.6608 19 6 8.4874 -2.5371 3.0469 20 6 8.4223 -2.7704 4.5584 21 1 -0.3634 0.5138 0.8899 22 1 -0.3632 0.5138 -0.8901 23 1 -0.3633 -1.0277 -0.0005 24 1 1.7210 -1.5952 -1.2329 25 1 1.7515 -1.7715 1.2056 26 1 1.6053 -0.2617 2.1370 27 1 3.8531 0.4370 1.3575 28 1 3.9994 -1.0728 0.4261 29 1 3.7863 -2.3853 2.5187 30 1 3.6402 -0.8758 3.4506 31 1 5.9630 -1.5913 1.7835 32 1 5.5731 -1.5245 4.7049 33 1 5.8738 -2.9846 3.7322 34 1 7.6328 -0.1218 7.3476 35 1 8.0157 -3.2785 2.4020 36 1 9.3890 -2.0724 2.6479 37 1 9.2812 -2.4589 5.1531 38 1 7.9078 -3.6652 4.9085 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000227728821.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:52:32 Heat of formation + Delta-G solvation = -69.188949 kcal Electronic energy + Delta-G solvation = -15732.271438 eV Core-core repulsion = 13187.701973 eV Total energy + Delta-G solvation = -2544.569465 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.14671 -38.66183 -36.46310 -33.95080 -33.52532 -31.14472 -27.94882 -27.06652 -24.75910 -22.95340 -22.38847 -22.14099 -20.82441 -18.05955 -17.34014 -16.99911 -16.68725 -16.28844 -15.66898 -15.47042 -15.03505 -14.84450 -14.43825 -13.88793 -13.70683 -13.18040 -13.05863 -12.88414 -12.68012 -12.61605 -12.39799 -12.32824 -12.23466 -12.00272 -11.59676 -11.54005 -11.34236 -10.78724 -10.72957 -10.36426 -9.91134 -9.04908 -8.03697 -6.09828 1.41296 1.43883 1.54901 2.48111 3.24210 3.26658 3.54926 3.67646 3.93195 4.07117 4.14339 4.33372 4.42169 4.46521 4.59081 4.61649 4.66857 4.72368 4.79296 4.86913 4.94203 4.98767 5.00463 5.09185 5.16797 5.27654 5.29372 5.41226 5.45583 5.64366 5.75333 5.88256 6.37614 6.52627 6.76612 6.92139 6.93837 7.55389 9.05745 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.028863 B = 0.005312 C = 0.004830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.866004 B = 5270.138777 C = 5796.117405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.102 3.898 3 H 0.087 0.913 4 O -0.581 6.581 5 C -0.141 4.141 6 C -0.103 4.103 7 C 0.063 3.937 8 N -0.684 5.684 9 C 0.122 3.878 10 C 0.022 3.978 11 C -0.479 4.479 12 H 0.047 0.953 13 C 0.020 3.980 14 N -0.913 5.913 15 Si 0.945 3.055 16 H -0.270 1.270 17 H -0.284 1.284 18 H -0.282 1.282 19 C -0.187 4.187 20 C -0.166 4.166 21 H 0.071 0.929 22 H 0.061 0.939 23 H 0.068 0.932 24 H 0.386 0.614 25 H 0.076 0.924 26 H 0.074 0.926 27 H 0.053 0.947 28 H 0.064 0.936 29 H 0.027 0.973 30 H 0.052 0.948 31 H 0.337 0.663 32 H 0.040 0.960 33 H 0.006 0.994 34 H 0.256 0.744 35 H 0.089 0.911 36 H 0.076 0.924 37 H 0.057 0.943 38 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.559 -2.621 -10.500 16.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.043 3.957 3 H 0.105 0.895 4 O -0.389 6.389 5 C -0.180 4.180 6 C -0.141 4.141 7 C -0.066 4.066 8 N -0.315 5.315 9 C -0.007 4.007 10 C 0.021 3.979 11 C -0.518 4.518 12 H 0.065 0.935 13 C -0.178 4.178 14 N -0.553 5.553 15 Si 0.772 3.228 16 H -0.195 1.195 17 H -0.211 1.211 18 H -0.208 1.208 19 C -0.224 4.224 20 C -0.204 4.204 21 H 0.090 0.910 22 H 0.080 0.920 23 H 0.087 0.913 24 H 0.236 0.764 25 H 0.095 0.905 26 H 0.093 0.907 27 H 0.071 0.929 28 H 0.082 0.918 29 H 0.045 0.955 30 H 0.070 0.930 31 H 0.155 0.845 32 H 0.058 0.942 33 H 0.024 0.976 34 H 0.065 0.935 35 H 0.107 0.893 36 H 0.094 0.906 37 H 0.076 0.924 38 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -12.326 -1.411 -10.110 16.004 hybrid contribution 0.177 -0.554 0.653 0.874 sum -12.148 -1.965 -9.458 15.521 Atomic orbital electron populations 1.22442 0.95046 1.03254 1.02915 1.21913 0.93650 0.96237 0.83925 0.89547 1.86563 1.77775 1.30203 1.44355 1.22224 0.94804 1.01903 0.99037 1.21392 0.95757 1.00448 0.96465 1.21968 0.87987 0.97927 0.98734 1.60166 1.04895 1.61658 1.04784 1.21185 0.95283 0.92149 0.92064 1.18968 0.88877 0.91335 0.98714 1.20573 1.43782 0.95760 0.91644 0.93526 1.25594 0.95674 1.00330 0.96235 1.70117 1.47392 1.38473 0.99283 0.85700 0.78008 0.81113 0.77958 1.19480 1.21067 1.20813 1.22973 1.02932 1.03964 0.92573 1.22438 1.03223 1.00437 0.94283 0.91008 0.91983 0.91264 0.76445 0.90511 0.90735 0.92853 0.91760 0.95454 0.92981 0.84547 0.94176 0.97587 0.93514 0.89264 0.90579 0.92423 0.91025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.45 9.53 71.98 0.69 -1.76 16 2 C 0.10 1.85 3.59 30.59 0.11 1.96 16 3 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 4 O -0.58 -11.55 12.88 -148.98 -1.92 -13.47 16 5 C -0.14 -2.76 4.89 30.59 0.15 -2.61 16 6 C -0.10 -2.71 5.37 30.59 0.16 -2.55 16 7 C 0.06 2.02 5.68 86.30 0.49 2.51 16 8 N -0.68 -27.16 6.38 -513.88 -3.28 -30.44 16 9 C 0.12 5.58 5.51 86.30 0.48 6.06 16 10 C 0.02 1.08 1.55 -52.93 -0.08 1.00 16 11 C -0.48 -26.86 8.74 25.60 0.22 -26.64 16 12 H 0.05 2.67 7.82 -2.91 -0.02 2.64 16 13 C 0.02 1.15 5.39 84.65 0.46 1.60 16 14 N -0.91 -53.42 12.92 21.45 0.28 -53.14 16 15 Si 0.95 44.99 29.54 68.60 2.03 47.02 16 16 H -0.27 -12.61 7.11 99.48 0.71 -11.91 16 17 H -0.28 -13.37 7.11 99.48 0.71 -12.66 16 18 H -0.28 -13.13 7.11 99.48 0.71 -12.43 16 19 C -0.19 -8.00 9.96 30.62 0.30 -7.70 16 20 C -0.17 -7.90 9.41 30.62 0.29 -7.61 16 21 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 22 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 23 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 24 H 0.39 4.73 9.05 -74.06 -0.67 4.06 16 25 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 26 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 27 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 28 H 0.06 1.69 7.82 -2.39 -0.02 1.67 16 29 H 0.03 0.80 8.14 -2.38 -0.02 0.78 16 30 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 31 H 0.34 12.34 8.79 -89.69 -0.79 11.55 16 32 H 0.04 2.09 8.13 -2.38 -0.02 2.07 16 33 H 0.01 0.26 8.09 -2.39 -0.02 0.24 16 34 H 0.26 14.33 8.31 -92.71 -0.77 13.56 16 35 H 0.09 3.28 8.14 -2.39 -0.02 3.26 16 36 H 0.08 3.25 8.14 -2.39 -0.02 3.23 16 37 H 0.06 2.98 8.14 -2.38 -0.02 2.96 16 38 H 0.07 3.19 8.14 -2.39 -0.02 3.17 16 Total: -1.00 -63.25 316.50 -0.07 -63.32 By element: Atomic # 1 Polarization: 22.89 SS G_CDS: -0.44 Total: 22.45 kcal Atomic # 6 Polarization: -39.00 SS G_CDS: 3.27 Total: -35.73 kcal Atomic # 7 Polarization: -80.58 SS G_CDS: -3.00 Total: -83.58 kcal Atomic # 8 Polarization: -11.55 SS G_CDS: -1.92 Total: -13.47 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 2.03 Total: 47.02 kcal Total: -63.25 -0.07 -63.32 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227728821.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.872 kcal (2) G-P(sol) polarization free energy of solvation -63.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds