Wall clock time and date at job start Mon Mar 30 2020 03:36:08
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 H 1.09001 * 109.47041 * 2 1
4 4 C 1.50703 * 109.46820 * 239.99994 * 2 1 3
5 5 H 1.08000 * 119.99853 * 239.99357 * 4 2 1
6 6 C 1.37870 * 119.99946 * 60.00156 * 4 2 1
7 7 N 1.31518 * 120.00179 * 359.97438 * 6 4 2
8 8 Si 1.86807 * 120.00031 * 179.97438 * 6 4 2
9 9 H 1.48493 * 109.47182 * 89.99372 * 8 6 4
10 10 H 1.48496 * 109.47405 * 209.99914 * 8 6 4
11 11 H 1.48502 * 109.46709 * 329.99904 * 8 6 4
12 12 N 1.46900 * 109.47500 * 119.99795 * 2 1 3
13 13 C 1.47017 * 110.99765 * 63.63629 * 12 2 1
14 14 C 1.53103 * 109.25606 * 177.61039 * 13 12 2
15 15 H 1.08993 * 109.50340 * 296.90966 * 14 13 12
16 16 C 1.53004 * 109.50321 * 176.78422 * 14 13 12
17 17 O 1.43010 * 109.25776 * 56.84682 * 14 13 12
18 18 C 1.43015 * 113.73980 * 301.32744 * 17 14 13
19 19 C 1.52999 * 109.50443 * 178.60624 * 18 17 14
20 20 C 1.53001 * 109.50754 * 298.73823 * 18 17 14
21 21 C 1.47014 * 111.00019 * 300.00253 * 12 2 1
22 22 H 1.09001 * 109.47277 * 180.02562 * 1 2 3
23 23 H 1.09001 * 109.47023 * 299.99404 * 1 2 3
24 24 H 1.08993 * 109.47677 * 60.00222 * 1 2 3
25 25 H 0.96995 * 119.99705 * 180.02562 * 7 6 4
26 26 H 1.09006 * 109.50736 * 297.54404 * 13 12 2
27 27 H 1.08997 * 109.50641 * 57.67468 * 13 12 2
28 28 H 1.09000 * 109.46800 * 300.21376 * 16 14 13
29 29 H 1.09002 * 109.47233 * 60.21693 * 16 14 13
30 30 H 1.09003 * 109.46633 * 180.21569 * 16 14 13
31 31 H 1.09002 * 109.47066 * 60.00325 * 19 18 17
32 32 H 1.09003 * 109.47222 * 180.02562 * 19 18 17
33 33 H 1.08997 * 109.47586 * 300.00175 * 19 18 17
34 34 H 1.08997 * 109.46959 * 59.99915 * 20 18 17
35 35 H 1.09001 * 109.46918 * 180.02562 * 20 18 17
36 36 H 1.09002 * 109.46911 * 300.00196 * 20 18 17
37 37 H 1.09004 * 109.50706 * 62.45483 * 21 12 2
38 38 H 1.08995 * 109.54210 * 302.34427 * 21 12 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 6 2.0322 -0.7104 -1.2305
5 1 2.6532 -1.5885 -1.1314
6 6 1.6992 -0.2394 -2.4827
7 7 0.9427 0.8297 -2.6034
8 14 2.3223 -1.1196 -4.0080
9 1 1.3447 -2.1616 -4.4123
10 1 2.4871 -0.1403 -5.1121
11 1 3.6307 -1.7566 -3.7120
12 7 2.0197 -0.6924 1.1994
13 6 1.6207 -2.1074 1.1907
14 6 2.2007 -2.8032 2.4250
15 1 3.2894 -2.7785 2.3787
16 6 1.7230 -4.2562 2.4640
17 8 1.7572 -2.1228 3.6021
18 6 2.1291 -0.7425 3.6439
19 6 1.5786 -0.1035 4.9204
20 6 3.6544 -0.6237 3.6287
21 6 1.5484 -0.0258 2.4220
22 1 -0.3634 -1.0277 0.0005
23 1 -0.3633 0.5137 0.8901
24 1 -0.3634 0.5137 -0.8899
25 1 0.7081 1.1608 -3.4843
26 1 0.5332 -2.1791 1.2099
27 1 2.0019 -2.5875 0.2894
28 1 0.6342 -4.2796 2.5083
29 1 2.0614 -4.7742 1.5666
30 1 2.1332 -4.7499 3.3450
31 1 1.9895 -0.6167 5.7899
32 1 1.8620 0.9486 4.9515
33 1 0.4919 -0.1871 4.9291
34 1 4.0452 -1.0775 2.7180
35 1 3.9372 0.4285 3.6611
36 1 4.0675 -1.1375 4.4968
37 1 0.4597 -0.0642 2.4609
38 1 1.8761 1.0137 2.4200
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000251782909.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:36:08
Heat of formation + Delta-G solvation = -47.421107 kcal
Electronic energy + Delta-G solvation = -17277.511040 eV
Core-core repulsion = 14733.885500 eV
Total energy + Delta-G solvation = -2543.625540 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 227.163 amu
Computer time = 0.33 seconds
Orbital eigenvalues (eV)
-39.63672 -35.90399 -33.91958 -32.56700 -30.46470 -28.46642 -27.07031 -26.34989
-25.06866 -23.68359 -21.42986 -19.80531 -18.56984 -16.38921 -15.89504 -15.42544
-14.52513 -14.42459 -14.20177 -14.00717 -13.12691 -12.75352 -12.53341 -12.47084
-11.98345 -11.83136 -11.72055 -11.59987 -11.51080 -11.17134 -10.99725 -10.77788
-10.72135 -10.66063 -10.30335 -10.17859 -9.96713 -9.59257 -8.97975 -8.74637
-8.40950 -7.15217 -6.02934 -4.07249 3.29018 3.35885 3.39377 4.05486
4.39049 4.87990 5.18954 5.29377 5.31130 5.39163 5.49108 5.66467
5.78224 5.83378 5.87698 5.95762 6.06646 6.10515 6.15519 6.21267
6.33882 6.40287 6.42281 6.63503 6.64405 6.73990 6.82603 6.87990
7.12271 7.47707 7.70064 7.74878 7.79581 8.07912 8.35897 8.57075
8.98143 9.57927 11.04142
Molecular weight = 227.16amu
Principal moments of inertia in cm(-1)
A = 0.033813 B = 0.008413 C = 0.007564
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 827.890328 B = 3327.387237 C = 3700.884982
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.171 4.171
2 C 0.211 3.789
3 H 0.040 0.960
4 C -0.502 4.502
5 H 0.062 0.938
6 C 0.059 3.941
7 N -0.893 5.893
8 Si 0.896 3.104
9 H -0.282 1.282
10 H -0.287 1.287
11 H -0.274 1.274
12 N -0.528 5.528
13 C 0.034 3.966
14 C 0.083 3.917
15 H 0.062 0.938
16 C -0.141 4.141
17 O -0.382 6.382
18 C 0.114 3.886
19 C -0.135 4.135
20 C -0.164 4.164
21 C 0.030 3.970
22 H 0.028 0.972
23 H 0.009 0.991
24 H 0.088 0.912
25 H 0.260 0.740
26 H 0.033 0.967
27 H 0.091 0.909
28 H 0.058 0.942
29 H 0.070 0.930
30 H 0.057 0.943
31 H 0.059 0.941
32 H 0.068 0.932
33 H 0.058 0.942
34 H 0.074 0.926
35 H 0.059 0.941
36 H 0.048 0.952
37 H 0.035 0.965
38 H 0.072 0.928
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.661 -4.136 10.584 11.484
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.230 4.230
2 C 0.105 3.895
3 H 0.058 0.942
4 C -0.541 4.541
5 H 0.081 0.919
6 C -0.142 4.142
7 N -0.532 5.532
8 Si 0.724 3.276
9 H -0.208 1.208
10 H -0.213 1.213
11 H -0.198 1.198
12 N -0.251 5.251
13 C -0.095 4.095
14 C 0.026 3.974
15 H 0.080 0.920
16 C -0.198 4.198
17 O -0.303 6.303
18 C 0.074 3.926
19 C -0.192 4.192
20 C -0.222 4.222
21 C -0.099 4.099
22 H 0.047 0.953
23 H 0.028 0.972
24 H 0.106 0.894
25 H 0.070 0.930
26 H 0.051 0.949
27 H 0.109 0.891
28 H 0.077 0.923
29 H 0.088 0.912
30 H 0.076 0.924
31 H 0.078 0.922
32 H 0.087 0.913
33 H 0.077 0.923
34 H 0.093 0.907
35 H 0.079 0.921
36 H 0.067 0.933
37 H 0.054 0.946
38 H 0.091 0.909
Dipole moment (debyes) X Y Z Total
from point charges 2.003 -4.073 10.567 11.501
hybrid contribution -0.570 -0.231 -1.170 1.322
sum 1.434 -4.304 9.397 10.435
Atomic orbital electron populations
1.22387 1.00874 0.99250 1.00533 1.19306 0.89774 0.94617 0.85839
0.94181 1.21118 1.30732 1.12486 0.89740 0.91940 1.24929 0.95204
0.95089 0.99006 1.69888 1.36952 1.22992 1.23409 0.86534 0.79232
0.79298 0.82573 1.20812 1.21265 1.19843 1.62572 1.58939 1.01371
1.02263 1.22649 0.98121 0.90885 0.97839 1.22243 0.98299 0.91701
0.85174 0.91997 1.21717 1.01944 0.94305 1.01866 1.87899 1.78678
1.22103 1.41573 1.21516 0.94229 0.82001 0.94807 1.21717 1.01420
1.00004 0.96083 1.22237 0.95529 1.02097 1.02311 1.22667 0.97734
0.98455 0.91076 0.95331 0.97231 0.89362 0.92990 0.94901 0.89087
0.92254 0.91151 0.92425 0.92188 0.91318 0.92258 0.90690 0.92149
0.93261 0.94641 0.90937
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -4.21 8.27 37.16 0.31 -3.90 16
2 C 0.21 5.31 2.42 -68.86 -0.17 5.14 16
3 H 0.04 1.11 8.14 -51.93 -0.42 0.69 16
4 C -0.50 -13.59 7.90 -34.44 -0.27 -13.86 16
5 H 0.06 1.68 6.42 -52.49 -0.34 1.34 16
6 C 0.06 1.61 5.30 -17.82 -0.09 1.52 16
7 N -0.89 -25.36 11.32 55.43 0.63 -24.73 16
8 Si 0.90 21.19 29.54 -169.99 -5.02 16.17 16
9 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16
10 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16
11 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16
12 N -0.53 -11.42 4.11 -227.71 -0.94 -12.35 16
13 C 0.03 0.68 4.26 -3.71 -0.02 0.66 16
14 C 0.08 1.43 3.03 -26.68 -0.08 1.35 16
15 H 0.06 1.06 6.49 -51.93 -0.34 0.72 16
16 C -0.14 -1.98 9.57 37.16 0.36 -1.63 16
17 O -0.38 -6.75 9.93 -35.23 -0.35 -7.10 16
18 C 0.11 1.87 1.11 -90.57 -0.10 1.77 16
19 C -0.13 -1.80 8.85 37.16 0.33 -1.47 16
20 C -0.16 -2.50 8.17 37.16 0.30 -2.20 16
21 C 0.03 0.56 3.89 -3.71 -0.01 0.55 16
22 H 0.03 0.68 6.54 -51.93 -0.34 0.34 16
23 H 0.01 0.20 6.46 -51.93 -0.34 -0.13 16
24 H 0.09 2.38 6.07 -51.93 -0.32 2.06 16
25 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16
26 H 0.03 0.70 6.52 -51.93 -0.34 0.36 16
27 H 0.09 1.94 6.18 -51.93 -0.32 1.62 16
28 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16
29 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16
30 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16
31 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16
32 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16
33 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16
34 H 0.07 1.28 6.13 -51.93 -0.32 0.96 16
35 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16
36 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16
37 H 0.04 0.71 6.44 -51.93 -0.33 0.38 16
38 H 0.07 1.35 8.14 -51.93 -0.42 0.92 16
LS Contribution 285.98 15.07 4.31 4.31
Total: -1.00 -28.27 285.98 -7.16 -35.43
By element:
Atomic # 1 Polarization: 6.69 SS G_CDS: -6.34 Total: 0.35 kcal
Atomic # 6 Polarization: -12.63 SS G_CDS: 0.55 Total: -12.08 kcal
Atomic # 7 Polarization: -36.78 SS G_CDS: -0.31 Total: -37.09 kcal
Atomic # 8 Polarization: -6.75 SS G_CDS: -0.35 Total: -7.10 kcal
Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal
Total LS contribution 4.31 Total: 4.31 kcal
Total: -28.27 -7.16 -35.43 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000251782909.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -11.991 kcal
(2) G-P(sol) polarization free energy of solvation -28.271 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.262 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.159 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.430 kcal
(6) G-S(sol) free energy of system = (1) + (5) -47.421 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.33 seconds