Wall clock time and date at job start Mon Mar 30 2020 03:36:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.47041 * 2 1 4 4 C 1.50703 * 109.46820 * 239.99994 * 2 1 3 5 5 H 1.08000 * 119.99853 * 239.99357 * 4 2 1 6 6 C 1.37870 * 119.99946 * 60.00156 * 4 2 1 7 7 N 1.31518 * 120.00179 * 359.97438 * 6 4 2 8 8 Si 1.86807 * 120.00031 * 179.97438 * 6 4 2 9 9 H 1.48493 * 109.47182 * 89.99372 * 8 6 4 10 10 H 1.48496 * 109.47405 * 209.99914 * 8 6 4 11 11 H 1.48502 * 109.46709 * 329.99904 * 8 6 4 12 12 N 1.46900 * 109.47500 * 119.99795 * 2 1 3 13 13 C 1.47017 * 110.99765 * 63.63629 * 12 2 1 14 14 C 1.53103 * 109.25606 * 177.61039 * 13 12 2 15 15 H 1.08993 * 109.50340 * 296.90966 * 14 13 12 16 16 C 1.53004 * 109.50321 * 176.78422 * 14 13 12 17 17 O 1.43010 * 109.25776 * 56.84682 * 14 13 12 18 18 C 1.43015 * 113.73980 * 301.32744 * 17 14 13 19 19 C 1.52999 * 109.50443 * 178.60624 * 18 17 14 20 20 C 1.53001 * 109.50754 * 298.73823 * 18 17 14 21 21 C 1.47014 * 111.00019 * 300.00253 * 12 2 1 22 22 H 1.09001 * 109.47277 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.47023 * 299.99404 * 1 2 3 24 24 H 1.08993 * 109.47677 * 60.00222 * 1 2 3 25 25 H 0.96995 * 119.99705 * 180.02562 * 7 6 4 26 26 H 1.09006 * 109.50736 * 297.54404 * 13 12 2 27 27 H 1.08997 * 109.50641 * 57.67468 * 13 12 2 28 28 H 1.09000 * 109.46800 * 300.21376 * 16 14 13 29 29 H 1.09002 * 109.47233 * 60.21693 * 16 14 13 30 30 H 1.09003 * 109.46633 * 180.21569 * 16 14 13 31 31 H 1.09002 * 109.47066 * 60.00325 * 19 18 17 32 32 H 1.09003 * 109.47222 * 180.02562 * 19 18 17 33 33 H 1.08997 * 109.47586 * 300.00175 * 19 18 17 34 34 H 1.08997 * 109.46959 * 59.99915 * 20 18 17 35 35 H 1.09001 * 109.46918 * 180.02562 * 20 18 17 36 36 H 1.09002 * 109.46911 * 300.00196 * 20 18 17 37 37 H 1.09004 * 109.50706 * 62.45483 * 21 12 2 38 38 H 1.08995 * 109.54210 * 302.34427 * 21 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6992 -0.2394 -2.4827 7 7 0.9427 0.8297 -2.6034 8 14 2.3223 -1.1196 -4.0080 9 1 1.3447 -2.1616 -4.4123 10 1 2.4871 -0.1403 -5.1121 11 1 3.6307 -1.7566 -3.7120 12 7 2.0197 -0.6924 1.1994 13 6 1.6207 -2.1074 1.1907 14 6 2.2007 -2.8032 2.4250 15 1 3.2894 -2.7785 2.3787 16 6 1.7230 -4.2562 2.4640 17 8 1.7572 -2.1228 3.6021 18 6 2.1291 -0.7425 3.6439 19 6 1.5786 -0.1035 4.9204 20 6 3.6544 -0.6237 3.6287 21 6 1.5484 -0.0258 2.4220 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3633 0.5137 0.8901 24 1 -0.3634 0.5137 -0.8899 25 1 0.7081 1.1608 -3.4843 26 1 0.5332 -2.1791 1.2099 27 1 2.0019 -2.5875 0.2894 28 1 0.6342 -4.2796 2.5083 29 1 2.0614 -4.7742 1.5666 30 1 2.1332 -4.7499 3.3450 31 1 1.9895 -0.6167 5.7899 32 1 1.8620 0.9486 4.9515 33 1 0.4919 -0.1871 4.9291 34 1 4.0452 -1.0775 2.7180 35 1 3.9372 0.4285 3.6611 36 1 4.0675 -1.1375 4.4968 37 1 0.4597 -0.0642 2.4609 38 1 1.8761 1.0137 2.4200 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000251782909.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:36:06 Heat of formation + Delta-G solvation = -65.282525 kcal Electronic energy + Delta-G solvation = -17278.285569 eV Core-core repulsion = 14733.885500 eV Total energy + Delta-G solvation = -2544.400069 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.10982 -37.64466 -35.21801 -34.54859 -31.92117 -30.22240 -28.28203 -27.93419 -26.97421 -25.37718 -22.77320 -21.60758 -20.06590 -18.33203 -17.41518 -17.05026 -16.31401 -16.02854 -15.73373 -15.36728 -14.79116 -14.53480 -14.12571 -13.75613 -13.42091 -13.15875 -13.06441 -12.98006 -12.85072 -12.80762 -12.60889 -12.56681 -12.41673 -12.23363 -12.09304 -11.95120 -11.69735 -11.04408 -10.91551 -10.53328 -10.30278 -8.91841 -8.13060 -6.24454 1.41422 1.42362 1.52847 2.41071 2.76644 3.15985 3.25923 3.86794 4.03765 4.08348 4.16553 4.26277 4.47429 4.51441 4.62658 4.71343 4.74400 4.77455 4.81906 4.83098 4.93611 4.97508 5.06434 5.07202 5.12200 5.18262 5.27533 5.32274 5.46767 5.53944 5.67195 5.73536 6.11441 6.37249 6.41579 6.67049 6.88241 7.44792 8.93460 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.033813 B = 0.008413 C = 0.007564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 827.890328 B = 3327.387237 C = 3700.884982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.214 3.786 3 H 0.008 0.992 4 C -0.516 4.516 5 H 0.060 0.940 6 C 0.011 3.989 7 N -0.921 5.921 8 Si 0.960 3.040 9 H -0.276 1.276 10 H -0.284 1.284 11 H -0.268 1.268 12 N -0.532 5.532 13 C 0.038 3.962 14 C 0.088 3.912 15 H 0.065 0.935 16 C -0.136 4.136 17 O -0.388 6.388 18 C 0.111 3.889 19 C -0.130 4.130 20 C -0.159 4.159 21 C 0.029 3.971 22 H 0.025 0.975 23 H 0.023 0.977 24 H 0.063 0.937 25 H 0.261 0.739 26 H 0.017 0.983 27 H 0.075 0.925 28 H 0.055 0.945 29 H 0.082 0.918 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.085 0.915 33 H 0.055 0.945 34 H 0.053 0.947 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.023 0.977 38 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.375 -5.184 11.687 13.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.107 3.893 3 H 0.026 0.974 4 C -0.554 4.554 5 H 0.078 0.922 6 C -0.188 4.188 7 N -0.561 5.561 8 Si 0.785 3.215 9 H -0.202 1.202 10 H -0.210 1.210 11 H -0.192 1.192 12 N -0.256 5.256 13 C -0.091 4.091 14 C 0.030 3.970 15 H 0.083 0.917 16 C -0.193 4.193 17 O -0.308 6.308 18 C 0.072 3.928 19 C -0.187 4.187 20 C -0.216 4.216 21 C -0.100 4.100 22 H 0.044 0.956 23 H 0.042 0.958 24 H 0.082 0.918 25 H 0.070 0.930 26 H 0.035 0.965 27 H 0.094 0.906 28 H 0.075 0.925 29 H 0.100 0.900 30 H 0.096 0.904 31 H 0.095 0.905 32 H 0.104 0.896 33 H 0.074 0.926 34 H 0.072 0.928 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.041 0.959 38 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 2.721 -5.129 11.691 13.054 hybrid contribution -0.798 0.136 -1.480 1.687 sum 1.923 -4.994 10.211 11.528 Atomic orbital electron populations 1.22178 1.00629 0.98747 0.99923 1.19071 0.89811 0.93141 0.87242 0.97423 1.21372 1.30776 1.12525 0.90767 0.92192 1.25716 0.95358 0.95767 1.01922 1.70017 1.37827 1.24188 1.24050 0.85523 0.78873 0.78212 0.78842 1.20185 1.20993 1.19205 1.62479 1.58969 1.02122 1.02022 1.22644 0.97193 0.90122 0.99108 1.22258 0.98272 0.92917 0.83530 0.91747 1.21716 1.01816 0.92316 1.03456 1.87913 1.78901 1.22632 1.41344 1.21701 0.95075 0.81348 0.94722 1.21722 1.01201 1.00977 0.94820 1.22179 0.94458 1.02866 1.02110 1.22777 0.97117 0.98862 0.91221 0.95617 0.95823 0.91844 0.92955 0.96454 0.90625 0.92550 0.89964 0.90435 0.90480 0.89584 0.92559 0.92841 0.91167 0.91219 0.95890 0.90885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.83 8.27 71.98 0.60 -7.23 16 2 C 0.21 11.09 2.42 44.17 0.11 11.19 16 3 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 4 C -0.52 -28.38 7.90 25.60 0.20 -28.18 16 5 H 0.06 3.26 6.42 -2.91 -0.02 3.24 16 6 C 0.01 0.60 5.30 84.65 0.45 1.05 16 7 N -0.92 -53.21 11.32 21.45 0.24 -52.97 16 8 Si 0.96 43.60 29.54 68.60 2.03 45.62 16 9 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 10 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 11 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 12 N -0.53 -23.26 4.11 -874.35 -3.60 -26.85 16 13 C 0.04 1.53 4.26 86.32 0.37 1.89 16 14 C 0.09 2.89 3.03 30.63 0.09 2.98 16 15 H 0.06 2.10 6.49 -2.39 -0.02 2.09 16 16 C -0.14 -3.53 9.57 71.98 0.69 -2.84 16 17 O -0.39 -12.92 9.93 -148.98 -1.48 -14.40 16 18 C 0.11 3.43 1.11 -10.76 -0.01 3.42 16 19 C -0.13 -3.11 8.85 71.98 0.64 -2.47 16 20 C -0.16 -4.49 8.17 71.98 0.59 -3.91 16 21 C 0.03 1.09 3.89 86.31 0.34 1.42 16 22 H 0.02 1.25 6.54 -2.39 -0.02 1.24 16 23 H 0.02 1.07 6.46 -2.39 -0.02 1.05 16 24 H 0.06 3.51 6.07 -2.39 -0.01 3.50 16 25 H 0.26 14.37 8.31 -92.71 -0.77 13.60 16 26 H 0.02 0.74 6.52 -2.38 -0.02 0.73 16 27 H 0.08 3.25 6.18 -2.39 -0.01 3.24 16 28 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 29 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 30 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 31 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 32 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 33 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 34 H 0.05 1.74 6.13 -2.39 -0.01 1.73 16 35 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 36 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 37 H 0.02 0.92 6.44 -2.39 -0.02 0.90 16 38 H 0.07 2.70 8.14 -2.39 -0.02 2.68 16 Total: -1.00 -60.45 285.98 2.26 -58.19 By element: Atomic # 1 Polarization: 12.06 SS G_CDS: 1.02 Total: 13.07 kcal Atomic # 6 Polarization: -26.72 SS G_CDS: 4.05 Total: -22.67 kcal Atomic # 7 Polarization: -76.47 SS G_CDS: -3.35 Total: -79.82 kcal Atomic # 8 Polarization: -12.92 SS G_CDS: -1.48 Total: -14.40 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.62 kcal Total: -60.45 2.26 -58.19 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251782909.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.091 kcal (2) G-P(sol) polarization free energy of solvation -60.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds