Wall clock time and date at job start Mon Mar 30 2020 03:36:06
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 H 1.09001 * 109.47041 * 2 1
4 4 C 1.50703 * 109.46820 * 239.99994 * 2 1 3
5 5 H 1.08000 * 119.99853 * 239.99357 * 4 2 1
6 6 C 1.37870 * 119.99946 * 60.00156 * 4 2 1
7 7 N 1.31518 * 120.00179 * 359.97438 * 6 4 2
8 8 Si 1.86807 * 120.00031 * 179.97438 * 6 4 2
9 9 H 1.48493 * 109.47182 * 89.99372 * 8 6 4
10 10 H 1.48496 * 109.47405 * 209.99914 * 8 6 4
11 11 H 1.48502 * 109.46709 * 329.99904 * 8 6 4
12 12 N 1.46900 * 109.47500 * 119.99795 * 2 1 3
13 13 C 1.47017 * 110.99765 * 63.63629 * 12 2 1
14 14 C 1.53103 * 109.25606 * 177.61039 * 13 12 2
15 15 H 1.08993 * 109.50340 * 296.90966 * 14 13 12
16 16 C 1.53004 * 109.50321 * 176.78422 * 14 13 12
17 17 O 1.43010 * 109.25776 * 56.84682 * 14 13 12
18 18 C 1.43015 * 113.73980 * 301.32744 * 17 14 13
19 19 C 1.52999 * 109.50443 * 178.60624 * 18 17 14
20 20 C 1.53001 * 109.50754 * 298.73823 * 18 17 14
21 21 C 1.47014 * 111.00019 * 300.00253 * 12 2 1
22 22 H 1.09001 * 109.47277 * 180.02562 * 1 2 3
23 23 H 1.09001 * 109.47023 * 299.99404 * 1 2 3
24 24 H 1.08993 * 109.47677 * 60.00222 * 1 2 3
25 25 H 0.96995 * 119.99705 * 180.02562 * 7 6 4
26 26 H 1.09006 * 109.50736 * 297.54404 * 13 12 2
27 27 H 1.08997 * 109.50641 * 57.67468 * 13 12 2
28 28 H 1.09000 * 109.46800 * 300.21376 * 16 14 13
29 29 H 1.09002 * 109.47233 * 60.21693 * 16 14 13
30 30 H 1.09003 * 109.46633 * 180.21569 * 16 14 13
31 31 H 1.09002 * 109.47066 * 60.00325 * 19 18 17
32 32 H 1.09003 * 109.47222 * 180.02562 * 19 18 17
33 33 H 1.08997 * 109.47586 * 300.00175 * 19 18 17
34 34 H 1.08997 * 109.46959 * 59.99915 * 20 18 17
35 35 H 1.09001 * 109.46918 * 180.02562 * 20 18 17
36 36 H 1.09002 * 109.46911 * 300.00196 * 20 18 17
37 37 H 1.09004 * 109.50706 * 62.45483 * 21 12 2
38 38 H 1.08995 * 109.54210 * 302.34427 * 21 12 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 6 2.0322 -0.7104 -1.2305
5 1 2.6532 -1.5885 -1.1314
6 6 1.6992 -0.2394 -2.4827
7 7 0.9427 0.8297 -2.6034
8 14 2.3223 -1.1196 -4.0080
9 1 1.3447 -2.1616 -4.4123
10 1 2.4871 -0.1403 -5.1121
11 1 3.6307 -1.7566 -3.7120
12 7 2.0197 -0.6924 1.1994
13 6 1.6207 -2.1074 1.1907
14 6 2.2007 -2.8032 2.4250
15 1 3.2894 -2.7785 2.3787
16 6 1.7230 -4.2562 2.4640
17 8 1.7572 -2.1228 3.6021
18 6 2.1291 -0.7425 3.6439
19 6 1.5786 -0.1035 4.9204
20 6 3.6544 -0.6237 3.6287
21 6 1.5484 -0.0258 2.4220
22 1 -0.3634 -1.0277 0.0005
23 1 -0.3633 0.5137 0.8901
24 1 -0.3634 0.5137 -0.8899
25 1 0.7081 1.1608 -3.4843
26 1 0.5332 -2.1791 1.2099
27 1 2.0019 -2.5875 0.2894
28 1 0.6342 -4.2796 2.5083
29 1 2.0614 -4.7742 1.5666
30 1 2.1332 -4.7499 3.3450
31 1 1.9895 -0.6167 5.7899
32 1 1.8620 0.9486 4.9515
33 1 0.4919 -0.1871 4.9291
34 1 4.0452 -1.0775 2.7180
35 1 3.9372 0.4285 3.6611
36 1 4.0675 -1.1375 4.4968
37 1 0.4597 -0.0642 2.4609
38 1 1.8761 1.0137 2.4200
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000251782909.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:36:06
Heat of formation + Delta-G solvation = -65.282525 kcal
Electronic energy + Delta-G solvation = -17278.285569 eV
Core-core repulsion = 14733.885500 eV
Total energy + Delta-G solvation = -2544.400069 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 227.163 amu
Computer time = 0.86 seconds
Orbital eigenvalues (eV)
-41.10982 -37.64466 -35.21801 -34.54859 -31.92117 -30.22240 -28.28203 -27.93419
-26.97421 -25.37718 -22.77320 -21.60758 -20.06590 -18.33203 -17.41518 -17.05026
-16.31401 -16.02854 -15.73373 -15.36728 -14.79116 -14.53480 -14.12571 -13.75613
-13.42091 -13.15875 -13.06441 -12.98006 -12.85072 -12.80762 -12.60889 -12.56681
-12.41673 -12.23363 -12.09304 -11.95120 -11.69735 -11.04408 -10.91551 -10.53328
-10.30278 -8.91841 -8.13060 -6.24454 1.41422 1.42362 1.52847 2.41071
2.76644 3.15985 3.25923 3.86794 4.03765 4.08348 4.16553 4.26277
4.47429 4.51441 4.62658 4.71343 4.74400 4.77455 4.81906 4.83098
4.93611 4.97508 5.06434 5.07202 5.12200 5.18262 5.27533 5.32274
5.46767 5.53944 5.67195 5.73536 6.11441 6.37249 6.41579 6.67049
6.88241 7.44792 8.93460
Molecular weight = 227.16amu
Principal moments of inertia in cm(-1)
A = 0.033813 B = 0.008413 C = 0.007564
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 827.890328 B = 3327.387237 C = 3700.884982
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.155 4.155
2 C 0.214 3.786
3 H 0.008 0.992
4 C -0.516 4.516
5 H 0.060 0.940
6 C 0.011 3.989
7 N -0.921 5.921
8 Si 0.960 3.040
9 H -0.276 1.276
10 H -0.284 1.284
11 H -0.268 1.268
12 N -0.532 5.532
13 C 0.038 3.962
14 C 0.088 3.912
15 H 0.065 0.935
16 C -0.136 4.136
17 O -0.388 6.388
18 C 0.111 3.889
19 C -0.130 4.130
20 C -0.159 4.159
21 C 0.029 3.971
22 H 0.025 0.975
23 H 0.023 0.977
24 H 0.063 0.937
25 H 0.261 0.739
26 H 0.017 0.983
27 H 0.075 0.925
28 H 0.055 0.945
29 H 0.082 0.918
30 H 0.077 0.923
31 H 0.076 0.924
32 H 0.085 0.915
33 H 0.055 0.945
34 H 0.053 0.947
35 H 0.069 0.931
36 H 0.069 0.931
37 H 0.023 0.977
38 H 0.073 0.927
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.375 -5.184 11.687 13.004
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.215 4.215
2 C 0.107 3.893
3 H 0.026 0.974
4 C -0.554 4.554
5 H 0.078 0.922
6 C -0.188 4.188
7 N -0.561 5.561
8 Si 0.785 3.215
9 H -0.202 1.202
10 H -0.210 1.210
11 H -0.192 1.192
12 N -0.256 5.256
13 C -0.091 4.091
14 C 0.030 3.970
15 H 0.083 0.917
16 C -0.193 4.193
17 O -0.308 6.308
18 C 0.072 3.928
19 C -0.187 4.187
20 C -0.216 4.216
21 C -0.100 4.100
22 H 0.044 0.956
23 H 0.042 0.958
24 H 0.082 0.918
25 H 0.070 0.930
26 H 0.035 0.965
27 H 0.094 0.906
28 H 0.075 0.925
29 H 0.100 0.900
30 H 0.096 0.904
31 H 0.095 0.905
32 H 0.104 0.896
33 H 0.074 0.926
34 H 0.072 0.928
35 H 0.088 0.912
36 H 0.088 0.912
37 H 0.041 0.959
38 H 0.091 0.909
Dipole moment (debyes) X Y Z Total
from point charges 2.721 -5.129 11.691 13.054
hybrid contribution -0.798 0.136 -1.480 1.687
sum 1.923 -4.994 10.211 11.528
Atomic orbital electron populations
1.22178 1.00629 0.98747 0.99923 1.19071 0.89811 0.93141 0.87242
0.97423 1.21372 1.30776 1.12525 0.90767 0.92192 1.25716 0.95358
0.95767 1.01922 1.70017 1.37827 1.24188 1.24050 0.85523 0.78873
0.78212 0.78842 1.20185 1.20993 1.19205 1.62479 1.58969 1.02122
1.02022 1.22644 0.97193 0.90122 0.99108 1.22258 0.98272 0.92917
0.83530 0.91747 1.21716 1.01816 0.92316 1.03456 1.87913 1.78901
1.22632 1.41344 1.21701 0.95075 0.81348 0.94722 1.21722 1.01201
1.00977 0.94820 1.22179 0.94458 1.02866 1.02110 1.22777 0.97117
0.98862 0.91221 0.95617 0.95823 0.91844 0.92955 0.96454 0.90625
0.92550 0.89964 0.90435 0.90480 0.89584 0.92559 0.92841 0.91167
0.91219 0.95890 0.90885
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -7.83 8.27 71.98 0.60 -7.23 16
2 C 0.21 11.09 2.42 44.17 0.11 11.19 16
3 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16
4 C -0.52 -28.38 7.90 25.60 0.20 -28.18 16
5 H 0.06 3.26 6.42 -2.91 -0.02 3.24 16
6 C 0.01 0.60 5.30 84.65 0.45 1.05 16
7 N -0.92 -53.21 11.32 21.45 0.24 -52.97 16
8 Si 0.96 43.60 29.54 68.60 2.03 45.62 16
9 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16
10 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16
11 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16
12 N -0.53 -23.26 4.11 -874.35 -3.60 -26.85 16
13 C 0.04 1.53 4.26 86.32 0.37 1.89 16
14 C 0.09 2.89 3.03 30.63 0.09 2.98 16
15 H 0.06 2.10 6.49 -2.39 -0.02 2.09 16
16 C -0.14 -3.53 9.57 71.98 0.69 -2.84 16
17 O -0.39 -12.92 9.93 -148.98 -1.48 -14.40 16
18 C 0.11 3.43 1.11 -10.76 -0.01 3.42 16
19 C -0.13 -3.11 8.85 71.98 0.64 -2.47 16
20 C -0.16 -4.49 8.17 71.98 0.59 -3.91 16
21 C 0.03 1.09 3.89 86.31 0.34 1.42 16
22 H 0.02 1.25 6.54 -2.39 -0.02 1.24 16
23 H 0.02 1.07 6.46 -2.39 -0.02 1.05 16
24 H 0.06 3.51 6.07 -2.39 -0.01 3.50 16
25 H 0.26 14.37 8.31 -92.71 -0.77 13.60 16
26 H 0.02 0.74 6.52 -2.38 -0.02 0.73 16
27 H 0.08 3.25 6.18 -2.39 -0.01 3.24 16
28 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16
29 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16
30 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16
31 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16
32 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16
33 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16
34 H 0.05 1.74 6.13 -2.39 -0.01 1.73 16
35 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16
36 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16
37 H 0.02 0.92 6.44 -2.39 -0.02 0.90 16
38 H 0.07 2.70 8.14 -2.39 -0.02 2.68 16
Total: -1.00 -60.45 285.98 2.26 -58.19
By element:
Atomic # 1 Polarization: 12.06 SS G_CDS: 1.02 Total: 13.07 kcal
Atomic # 6 Polarization: -26.72 SS G_CDS: 4.05 Total: -22.67 kcal
Atomic # 7 Polarization: -76.47 SS G_CDS: -3.35 Total: -79.82 kcal
Atomic # 8 Polarization: -12.92 SS G_CDS: -1.48 Total: -14.40 kcal
Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.62 kcal
Total: -60.45 2.26 -58.19 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000251782909.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -7.091 kcal
(2) G-P(sol) polarization free energy of solvation -60.454 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.545 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.262 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.191 kcal
(6) G-S(sol) free energy of system = (1) + (5) -65.283 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.86 seconds