Wall clock time and date at job start Mon Mar 30 2020 02:44:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47138 * 2 1 4 4 N 1.46898 * 109.47171 * 119.99977 * 2 1 3 5 5 C 1.46850 * 110.99781 * 55.79324 * 4 2 1 6 6 C 1.53037 * 109.52077 * 185.84018 * 5 4 2 7 7 C 1.53119 * 109.27742 * 300.81800 * 6 5 4 8 8 C 1.53125 * 109.16306 * 57.65504 * 7 6 5 9 9 O 1.42900 * 109.50115 * 62.28878 * 8 7 6 10 10 C 1.50693 * 109.50423 * 182.40484 * 8 7 6 11 11 H 1.08004 * 119.99694 * 116.15823 * 10 8 7 12 12 C 1.37877 * 120.00380 * 296.15671 * 10 8 7 13 13 N 1.31514 * 119.99574 * 5.91840 * 12 10 8 14 14 Si 1.86801 * 120.00306 * 185.92470 * 12 10 8 15 15 H 1.48501 * 109.47323 * 84.99479 * 14 12 10 16 16 H 1.48495 * 109.46966 * 204.99622 * 14 12 10 17 17 H 1.48495 * 109.46997 * 324.99358 * 14 12 10 18 18 C 1.46853 * 110.99900 * 179.97438 * 4 2 1 19 19 H 1.09003 * 109.45979 * 54.15783 * 18 4 2 20 20 C 1.52999 * 109.46092 * 294.17803 * 18 4 2 21 21 H 1.08996 * 109.47036 * 299.99412 * 1 2 3 22 22 H 1.09002 * 109.47329 * 60.00120 * 1 2 3 23 23 H 1.09008 * 109.47074 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.46696 * 240.00264 * 2 1 3 25 25 H 1.08994 * 109.47306 * 180.02562 * 3 2 1 26 26 H 1.09002 * 109.46912 * 300.00135 * 3 2 1 27 27 H 1.09000 * 109.46781 * 59.99620 * 3 2 1 28 28 H 1.08999 * 109.46512 * 305.84867 * 5 4 2 29 29 H 1.08994 * 109.46507 * 65.83451 * 5 4 2 30 30 H 1.08998 * 109.50914 * 60.75510 * 6 5 4 31 31 H 1.09000 * 109.50284 * 180.88124 * 6 5 4 32 32 H 1.08997 * 109.52629 * 177.55762 * 7 6 5 33 33 H 1.08995 * 109.52542 * 297.68815 * 7 6 5 34 34 H 0.96690 * 114.00669 * 64.51969 * 9 8 7 35 35 H 0.97005 * 119.99974 * 179.97438 * 13 12 10 36 36 H 1.09001 * 109.47211 * 60.00179 * 20 18 4 37 37 H 1.08997 * 109.47184 * 299.99870 * 20 18 4 38 38 H 1.09003 * 109.46710 * 179.97438 * 20 18 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 1.4685 -2.0509 1.2847 6 6 1.8811 -2.6878 2.6136 7 6 3.4092 -2.7306 2.7007 8 6 3.9607 -1.3090 2.5607 9 8 3.4856 -0.5044 3.6419 10 6 5.4669 -1.3488 2.5861 11 1 6.0300 -1.0399 1.7178 12 6 6.1262 -1.7795 3.7179 13 7 5.4436 -2.2649 4.7318 14 14 7.9888 -1.6735 3.8111 15 1 8.3852 -0.3176 4.2689 16 1 8.4949 -2.6876 4.7706 17 1 8.5671 -1.9311 2.4678 18 6 3.4877 -0.7126 1.2330 19 1 3.8671 0.3047 1.1367 20 6 4.0125 -1.5641 0.0753 21 1 -0.3633 0.5137 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3634 -1.0277 -0.0005 24 1 1.8933 -0.5138 -0.8900 25 1 3.1300 1.4425 -0.0005 26 1 1.6767 1.9563 -0.8900 27 1 1.6766 1.9563 0.8900 28 1 0.3810 -2.0060 1.2258 29 1 1.8523 -2.6511 0.4598 30 1 1.4861 -2.0958 3.4392 31 1 1.4849 -3.7017 2.6698 32 1 3.7078 -3.1438 3.6641 33 1 3.8025 -3.3554 1.8988 34 1 3.8027 -0.7861 4.5108 35 1 5.9074 -2.5683 5.5279 36 1 3.6764 -1.1386 -0.8703 37 1 3.6328 -2.5813 0.1712 38 1 5.1021 -1.5788 0.0998 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260686422.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:59 Heat of formation + Delta-G solvation = -50.588981 kcal Electronic energy + Delta-G solvation = -17657.125759 eV Core-core repulsion = 15113.362850 eV Total energy + Delta-G solvation = -2543.762910 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.25711 -35.76440 -32.95728 -31.96128 -31.24976 -29.16174 -26.98399 -26.14078 -24.63892 -22.66296 -21.09730 -19.63127 -17.54948 -16.84867 -15.68071 -15.09308 -14.70432 -14.46956 -13.78316 -13.40923 -12.96088 -12.78153 -12.39338 -11.97804 -11.83406 -11.68402 -11.53372 -11.39605 -11.09873 -11.01345 -10.87314 -10.74851 -10.53593 -10.47286 -10.02546 -9.99325 -9.63273 -9.43716 -8.77460 -8.48709 -7.82734 -7.37479 -6.10400 -4.21080 3.25952 3.32666 3.34929 4.32834 4.59971 5.11763 5.32890 5.35452 5.61424 5.77843 5.87399 5.91304 5.95042 6.05582 6.10613 6.13794 6.18060 6.19631 6.35634 6.41184 6.53108 6.58450 6.74217 6.75966 6.80691 6.86973 6.95009 7.13845 7.32404 7.60459 7.77027 7.92585 7.99208 8.11402 8.30514 8.80813 9.47690 9.75411 10.91498 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.038441 B = 0.009345 C = 0.008562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 728.214261 B = 2995.593292 C = 3269.586811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.071 3.929 3 C -0.143 4.143 4 N -0.515 5.515 5 C 0.055 3.945 6 C -0.114 4.114 7 C -0.137 4.137 8 C 0.267 3.733 9 O -0.578 6.578 10 C -0.535 4.535 11 H 0.060 0.940 12 C 0.069 3.931 13 N -0.896 5.896 14 Si 0.896 3.104 15 H -0.279 1.279 16 H -0.287 1.287 17 H -0.275 1.275 18 C 0.100 3.900 19 H 0.076 0.924 20 C -0.175 4.175 21 H 0.062 0.938 22 H 0.050 0.950 23 H 0.053 0.947 24 H 0.032 0.968 25 H 0.057 0.943 26 H 0.048 0.952 27 H 0.062 0.938 28 H 0.061 0.939 29 H 0.023 0.977 30 H 0.066 0.934 31 H 0.041 0.959 32 H 0.089 0.911 33 H 0.039 0.961 34 H 0.374 0.626 35 H 0.265 0.735 36 H 0.036 0.964 37 H 0.055 0.945 38 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.200 1.241 -6.864 9.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.038 4.038 3 C -0.200 4.200 4 N -0.239 5.239 5 C -0.073 4.073 6 C -0.152 4.152 7 C -0.175 4.175 8 C 0.227 3.773 9 O -0.386 6.386 10 C -0.573 4.573 11 H 0.078 0.922 12 C -0.132 4.132 13 N -0.537 5.537 14 Si 0.724 3.276 15 H -0.205 1.205 16 H -0.213 1.213 17 H -0.200 1.200 18 C -0.008 4.008 19 H 0.094 0.906 20 C -0.234 4.234 21 H 0.081 0.919 22 H 0.069 0.931 23 H 0.072 0.928 24 H 0.050 0.950 25 H 0.076 0.924 26 H 0.067 0.933 27 H 0.082 0.918 28 H 0.079 0.921 29 H 0.042 0.958 30 H 0.085 0.915 31 H 0.060 0.940 32 H 0.108 0.892 33 H 0.058 0.942 34 H 0.223 0.777 35 H 0.076 0.924 36 H 0.055 0.945 37 H 0.074 0.926 38 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -6.647 1.753 -6.768 9.647 hybrid contribution 1.670 -0.859 -0.215 1.890 sum -4.978 0.894 -6.984 8.622 Atomic orbital electron populations 1.21902 0.95342 1.01466 1.01450 1.21584 0.94796 0.95212 0.92183 1.21843 1.01434 0.95533 1.01197 1.62214 1.08951 1.16341 1.36407 1.22116 0.98259 0.89274 0.97631 1.21575 0.99045 0.97756 0.96774 1.22255 0.91630 1.00590 1.03066 1.18445 0.90403 0.85674 0.82773 1.86175 1.75330 1.58462 1.18602 1.21794 0.92114 1.43602 0.99827 0.92230 1.24973 0.98626 0.93841 0.95732 1.69640 1.35644 1.42185 1.06218 0.86555 0.85340 0.77878 0.77859 1.20460 1.21258 1.20049 1.21661 0.84730 0.99110 0.95265 0.90615 1.22387 1.02866 1.00637 0.97486 0.91936 0.93120 0.92829 0.94973 0.92370 0.93313 0.91849 0.92075 0.95844 0.91522 0.94006 0.89233 0.94235 0.77670 0.92438 0.94525 0.92570 0.91221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.99 8.84 37.16 0.33 -1.66 16 2 C 0.07 1.15 2.41 -67.71 -0.16 0.99 16 3 C -0.14 -2.19 8.97 37.16 0.33 -1.86 16 4 N -0.51 -10.05 4.36 -218.75 -0.95 -11.00 16 5 C 0.05 1.02 4.84 -3.83 -0.02 1.00 16 6 C -0.11 -2.32 5.94 -26.65 -0.16 -2.48 16 7 C -0.14 -3.23 4.48 -26.61 -0.12 -3.35 16 8 C 0.27 6.60 0.47 -91.69 -0.04 6.56 16 9 O -0.58 -15.37 12.30 -35.23 -0.43 -15.80 16 10 C -0.53 -14.20 7.57 -34.44 -0.26 -14.46 16 11 H 0.06 1.57 6.53 -52.48 -0.34 1.23 16 12 C 0.07 1.84 5.19 -17.82 -0.09 1.74 16 13 N -0.90 -23.97 9.75 55.43 0.54 -23.43 16 14 Si 0.90 20.76 29.54 -169.99 -5.02 15.74 16 15 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 16 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 17 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 18 C 0.10 2.17 1.88 -67.72 -0.13 2.05 16 19 H 0.08 1.72 6.01 -51.93 -0.31 1.41 16 20 C -0.18 -3.44 7.92 37.16 0.29 -3.14 16 21 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 22 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 23 H 0.05 0.71 6.22 -51.92 -0.32 0.39 16 24 H 0.03 0.52 6.46 -51.93 -0.34 0.19 16 25 H 0.06 0.95 6.28 -51.93 -0.33 0.63 16 26 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 28 H 0.06 1.01 5.90 -51.93 -0.31 0.71 16 29 H 0.02 0.43 6.19 -51.93 -0.32 0.11 16 30 H 0.07 1.45 7.80 -51.93 -0.40 1.05 16 31 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.09 2.33 6.24 -51.93 -0.32 2.00 16 33 H 0.04 0.92 6.56 -51.93 -0.34 0.58 16 34 H 0.37 10.19 7.00 45.56 0.32 10.51 16 35 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 36 H 0.04 0.63 6.54 -51.93 -0.34 0.29 16 37 H 0.06 1.11 4.80 -51.93 -0.25 0.86 16 38 H 0.07 1.43 6.50 -51.93 -0.34 1.09 16 LS Contribution 273.80 15.07 4.13 4.13 Total: -1.00 -26.95 273.80 -6.96 -33.91 By element: Atomic # 1 Polarization: 16.25 SS G_CDS: -5.19 Total: 11.06 kcal Atomic # 6 Polarization: -14.58 SS G_CDS: -0.03 Total: -14.61 kcal Atomic # 7 Polarization: -34.02 SS G_CDS: -0.41 Total: -34.43 kcal Atomic # 8 Polarization: -15.37 SS G_CDS: -0.43 Total: -15.80 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -26.95 -6.96 -33.91 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260686422.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.675 kcal (2) G-P(sol) polarization free energy of solvation -26.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds