Wall clock time and date at job start Mon Mar 30 2020 02:44:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47138 * 2 1 4 4 N 1.46898 * 109.47171 * 119.99977 * 2 1 3 5 5 C 1.46850 * 110.99781 * 55.79324 * 4 2 1 6 6 C 1.53037 * 109.52077 * 185.84018 * 5 4 2 7 7 C 1.53119 * 109.27742 * 300.81800 * 6 5 4 8 8 C 1.53125 * 109.16306 * 57.65504 * 7 6 5 9 9 O 1.42900 * 109.50115 * 62.28878 * 8 7 6 10 10 C 1.50693 * 109.50423 * 182.40484 * 8 7 6 11 11 H 1.08004 * 119.99694 * 116.15823 * 10 8 7 12 12 C 1.37877 * 120.00380 * 296.15671 * 10 8 7 13 13 N 1.31514 * 119.99574 * 5.91840 * 12 10 8 14 14 Si 1.86801 * 120.00306 * 185.92470 * 12 10 8 15 15 H 1.48501 * 109.47323 * 84.99479 * 14 12 10 16 16 H 1.48495 * 109.46966 * 204.99622 * 14 12 10 17 17 H 1.48495 * 109.46997 * 324.99358 * 14 12 10 18 18 C 1.46853 * 110.99900 * 179.97438 * 4 2 1 19 19 H 1.09003 * 109.45979 * 54.15783 * 18 4 2 20 20 C 1.52999 * 109.46092 * 294.17803 * 18 4 2 21 21 H 1.08996 * 109.47036 * 299.99412 * 1 2 3 22 22 H 1.09002 * 109.47329 * 60.00120 * 1 2 3 23 23 H 1.09008 * 109.47074 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.46696 * 240.00264 * 2 1 3 25 25 H 1.08994 * 109.47306 * 180.02562 * 3 2 1 26 26 H 1.09002 * 109.46912 * 300.00135 * 3 2 1 27 27 H 1.09000 * 109.46781 * 59.99620 * 3 2 1 28 28 H 1.08999 * 109.46512 * 305.84867 * 5 4 2 29 29 H 1.08994 * 109.46507 * 65.83451 * 5 4 2 30 30 H 1.08998 * 109.50914 * 60.75510 * 6 5 4 31 31 H 1.09000 * 109.50284 * 180.88124 * 6 5 4 32 32 H 1.08997 * 109.52629 * 177.55762 * 7 6 5 33 33 H 1.08995 * 109.52542 * 297.68815 * 7 6 5 34 34 H 0.96690 * 114.00669 * 64.51969 * 9 8 7 35 35 H 0.97005 * 119.99974 * 179.97438 * 13 12 10 36 36 H 1.09001 * 109.47211 * 60.00179 * 20 18 4 37 37 H 1.08997 * 109.47184 * 299.99870 * 20 18 4 38 38 H 1.09003 * 109.46710 * 179.97438 * 20 18 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 1.4685 -2.0509 1.2847 6 6 1.8811 -2.6878 2.6136 7 6 3.4092 -2.7306 2.7007 8 6 3.9607 -1.3090 2.5607 9 8 3.4856 -0.5044 3.6419 10 6 5.4669 -1.3488 2.5861 11 1 6.0300 -1.0399 1.7178 12 6 6.1262 -1.7795 3.7179 13 7 5.4436 -2.2649 4.7318 14 14 7.9888 -1.6735 3.8111 15 1 8.3852 -0.3176 4.2689 16 1 8.4949 -2.6876 4.7706 17 1 8.5671 -1.9311 2.4678 18 6 3.4877 -0.7126 1.2330 19 1 3.8671 0.3047 1.1367 20 6 4.0125 -1.5641 0.0753 21 1 -0.3633 0.5137 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3634 -1.0277 -0.0005 24 1 1.8933 -0.5138 -0.8900 25 1 3.1300 1.4425 -0.0005 26 1 1.6767 1.9563 -0.8900 27 1 1.6766 1.9563 0.8900 28 1 0.3810 -2.0060 1.2258 29 1 1.8523 -2.6511 0.4598 30 1 1.4861 -2.0958 3.4392 31 1 1.4849 -3.7017 2.6698 32 1 3.7078 -3.1438 3.6641 33 1 3.8025 -3.3554 1.8988 34 1 3.8027 -0.7861 4.5108 35 1 5.9074 -2.5683 5.5279 36 1 3.6764 -1.1386 -0.8703 37 1 3.6328 -2.5813 0.1712 38 1 5.1021 -1.5788 0.0998 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260686422.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:58 Heat of formation + Delta-G solvation = -68.979910 kcal Electronic energy + Delta-G solvation = -17657.923250 eV Core-core repulsion = 15113.362850 eV Total energy + Delta-G solvation = -2544.560400 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.87574 -37.49108 -34.57662 -34.01876 -32.87329 -30.78603 -28.26886 -27.86971 -26.40962 -24.30134 -22.76783 -21.10470 -19.20634 -18.80766 -17.26362 -16.98296 -16.43610 -15.98082 -15.57719 -14.98521 -14.61292 -14.31317 -13.91998 -13.52706 -13.31556 -13.28330 -13.09147 -12.90257 -12.79572 -12.75818 -12.42991 -12.28506 -12.17461 -11.96565 -11.89699 -11.66281 -11.29997 -11.14384 -10.63929 -10.45333 -9.80515 -8.86390 -8.11199 -6.29164 1.40056 1.42673 1.50134 2.40152 3.08320 3.15307 3.95665 4.05591 4.15744 4.33433 4.35523 4.46498 4.47668 4.57284 4.70133 4.76652 4.83738 4.91160 4.95732 4.99116 5.04581 5.06248 5.17894 5.21231 5.28907 5.31477 5.44976 5.48476 5.51834 5.63110 5.85783 6.13851 6.19570 6.48205 6.55533 6.78653 7.41980 7.64687 8.88280 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.038441 B = 0.009345 C = 0.008562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 728.214261 B = 2995.593292 C = 3269.586811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.066 3.934 3 C -0.140 4.140 4 N -0.531 5.531 5 C 0.058 3.942 6 C -0.109 4.109 7 C -0.129 4.129 8 C 0.254 3.746 9 O -0.588 6.588 10 C -0.556 4.556 11 H 0.054 0.946 12 C 0.028 3.972 13 N -0.912 5.912 14 Si 0.953 3.047 15 H -0.279 1.279 16 H -0.283 1.283 17 H -0.272 1.272 18 C 0.105 3.895 19 H 0.059 0.941 20 C -0.164 4.164 21 H 0.053 0.947 22 H 0.076 0.924 23 H 0.059 0.941 24 H 0.039 0.961 25 H 0.040 0.960 26 H 0.079 0.921 27 H 0.049 0.951 28 H 0.087 0.913 29 H 0.031 0.969 30 H 0.047 0.953 31 H 0.064 0.936 32 H 0.059 0.941 33 H 0.035 0.965 34 H 0.366 0.634 35 H 0.266 0.734 36 H 0.061 0.939 37 H 0.055 0.945 38 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.056 1.243 -8.450 11.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.042 4.042 3 C -0.197 4.197 4 N -0.256 5.256 5 C -0.070 4.070 6 C -0.147 4.147 7 C -0.168 4.168 8 C 0.215 3.785 9 O -0.395 6.395 10 C -0.594 4.594 11 H 0.072 0.928 12 C -0.172 4.172 13 N -0.553 5.553 14 Si 0.779 3.221 15 H -0.205 1.205 16 H -0.208 1.208 17 H -0.197 1.197 18 C -0.003 4.003 19 H 0.077 0.923 20 C -0.223 4.223 21 H 0.072 0.928 22 H 0.095 0.905 23 H 0.078 0.922 24 H 0.057 0.943 25 H 0.060 0.940 26 H 0.098 0.902 27 H 0.069 0.931 28 H 0.105 0.895 29 H 0.049 0.951 30 H 0.066 0.934 31 H 0.083 0.917 32 H 0.078 0.922 33 H 0.054 0.946 34 H 0.214 0.786 35 H 0.076 0.924 36 H 0.080 0.920 37 H 0.074 0.926 38 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -7.515 1.757 -8.369 11.384 hybrid contribution 1.918 -0.839 0.284 2.113 sum -5.597 0.918 -8.085 9.876 Atomic orbital electron populations 1.21857 0.93100 1.02184 1.02365 1.21755 0.96558 0.95026 0.90843 1.21827 1.00349 0.95459 1.02074 1.62158 1.07402 1.17205 1.38795 1.22125 0.99737 0.88729 0.96360 1.21514 0.96508 0.99102 0.97556 1.22066 0.94032 0.99539 1.01133 1.18697 0.89845 0.86442 0.83548 1.86176 1.75467 1.59193 1.18671 1.22072 0.93508 1.43903 0.99924 0.92796 1.25639 1.02377 0.93614 0.95558 1.69747 1.36839 1.42284 1.06404 0.85657 0.80875 0.77682 0.77861 1.20474 1.20813 1.19676 1.21431 0.86592 0.98163 0.94128 0.92312 1.22261 1.01797 1.00347 0.97882 0.92789 0.90477 0.92184 0.94277 0.94046 0.90236 0.93145 0.89470 0.95082 0.93369 0.91735 0.92208 0.94595 0.78630 0.92425 0.91979 0.92644 0.92692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.30 8.84 71.98 0.64 -2.66 16 2 C 0.07 1.97 2.41 44.92 0.11 2.08 16 3 C -0.14 -4.02 8.97 71.98 0.65 -3.38 16 4 N -0.53 -19.93 4.36 -846.00 -3.69 -23.62 16 5 C 0.06 2.01 4.84 86.33 0.42 2.43 16 6 C -0.11 -4.34 5.94 30.65 0.18 -4.16 16 7 C -0.13 -6.14 4.48 30.68 0.14 -6.00 16 8 C 0.25 12.74 0.47 -11.49 -0.01 12.74 16 9 O -0.59 -32.05 12.30 -148.98 -1.83 -33.89 16 10 C -0.56 -29.99 7.57 25.60 0.19 -29.79 16 11 H 0.05 2.89 6.53 -2.91 -0.02 2.88 16 12 C 0.03 1.47 5.19 84.65 0.44 1.91 16 13 N -0.91 -49.70 9.75 21.45 0.21 -49.49 16 14 Si 0.95 42.91 29.54 68.60 2.03 44.94 16 15 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 16 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 17 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 18 C 0.11 4.53 1.88 44.94 0.08 4.61 16 19 H 0.06 2.70 6.01 -2.39 -0.01 2.69 16 20 C -0.16 -6.26 7.92 71.98 0.57 -5.69 16 21 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 22 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 23 H 0.06 1.36 6.22 -2.38 -0.01 1.34 16 24 H 0.04 1.13 6.46 -2.39 -0.02 1.12 16 25 H 0.04 1.31 6.28 -2.39 -0.02 1.30 16 26 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 27 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 28 H 0.09 2.60 5.90 -2.39 -0.01 2.58 16 29 H 0.03 1.04 6.19 -2.39 -0.01 1.03 16 30 H 0.05 2.08 7.80 -2.39 -0.02 2.07 16 31 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 32 H 0.06 3.18 6.24 -2.39 -0.01 3.16 16 33 H 0.04 1.68 6.56 -2.39 -0.02 1.67 16 34 H 0.37 20.64 7.00 -74.06 -0.52 20.13 16 35 H 0.27 13.87 8.31 -92.70 -0.77 13.10 16 36 H 0.06 2.02 6.54 -2.39 -0.02 2.00 16 37 H 0.05 2.10 4.80 -2.39 -0.01 2.09 16 38 H 0.05 2.23 6.50 -2.39 -0.02 2.21 16 Total: -1.00 -57.76 273.80 0.66 -57.10 By element: Atomic # 1 Polarization: 32.33 SS G_CDS: 0.54 Total: 32.87 kcal Atomic # 6 Polarization: -31.32 SS G_CDS: 3.41 Total: -27.91 kcal Atomic # 7 Polarization: -69.63 SS G_CDS: -3.48 Total: -73.10 kcal Atomic # 8 Polarization: -32.05 SS G_CDS: -1.83 Total: -33.89 kcal Atomic # 14 Polarization: 42.91 SS G_CDS: 2.03 Total: 44.94 kcal Total: -57.76 0.66 -57.10 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260686422.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.885 kcal (2) G-P(sol) polarization free energy of solvation -57.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds