Wall clock time and date at job start Mon Mar 30 2020 02:44:58
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53003 * 1
3 3 C 1.53000 * 109.47138 * 2 1
4 4 N 1.46898 * 109.47171 * 119.99977 * 2 1 3
5 5 C 1.46850 * 110.99781 * 55.79324 * 4 2 1
6 6 C 1.53037 * 109.52077 * 185.84018 * 5 4 2
7 7 C 1.53119 * 109.27742 * 300.81800 * 6 5 4
8 8 C 1.53125 * 109.16306 * 57.65504 * 7 6 5
9 9 O 1.42900 * 109.50115 * 62.28878 * 8 7 6
10 10 C 1.50693 * 109.50423 * 182.40484 * 8 7 6
11 11 H 1.08004 * 119.99694 * 116.15823 * 10 8 7
12 12 C 1.37877 * 120.00380 * 296.15671 * 10 8 7
13 13 N 1.31514 * 119.99574 * 5.91840 * 12 10 8
14 14 Si 1.86801 * 120.00306 * 185.92470 * 12 10 8
15 15 H 1.48501 * 109.47323 * 84.99479 * 14 12 10
16 16 H 1.48495 * 109.46966 * 204.99622 * 14 12 10
17 17 H 1.48495 * 109.46997 * 324.99358 * 14 12 10
18 18 C 1.46853 * 110.99900 * 179.97438 * 4 2 1
19 19 H 1.09003 * 109.45979 * 54.15783 * 18 4 2
20 20 C 1.52999 * 109.46092 * 294.17803 * 18 4 2
21 21 H 1.08996 * 109.47036 * 299.99412 * 1 2 3
22 22 H 1.09002 * 109.47329 * 60.00120 * 1 2 3
23 23 H 1.09008 * 109.47074 * 179.97438 * 1 2 3
24 24 H 1.09001 * 109.46696 * 240.00264 * 2 1 3
25 25 H 1.08994 * 109.47306 * 180.02562 * 3 2 1
26 26 H 1.09002 * 109.46912 * 300.00135 * 3 2 1
27 27 H 1.09000 * 109.46781 * 59.99620 * 3 2 1
28 28 H 1.08999 * 109.46512 * 305.84867 * 5 4 2
29 29 H 1.08994 * 109.46507 * 65.83451 * 5 4 2
30 30 H 1.08998 * 109.50914 * 60.75510 * 6 5 4
31 31 H 1.09000 * 109.50284 * 180.88124 * 6 5 4
32 32 H 1.08997 * 109.52629 * 177.55762 * 7 6 5
33 33 H 1.08995 * 109.52542 * 297.68815 * 7 6 5
34 34 H 0.96690 * 114.00669 * 64.51969 * 9 8 7
35 35 H 0.97005 * 119.99974 * 179.97438 * 13 12 10
36 36 H 1.09001 * 109.47211 * 60.00179 * 20 18 4
37 37 H 1.08997 * 109.47184 * 299.99870 * 20 18 4
38 38 H 1.09003 * 109.46710 * 179.97438 * 20 18 4
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 7 2.0197 -0.6925 1.1994
5 6 1.4685 -2.0509 1.2847
6 6 1.8811 -2.6878 2.6136
7 6 3.4092 -2.7306 2.7007
8 6 3.9607 -1.3090 2.5607
9 8 3.4856 -0.5044 3.6419
10 6 5.4669 -1.3488 2.5861
11 1 6.0300 -1.0399 1.7178
12 6 6.1262 -1.7795 3.7179
13 7 5.4436 -2.2649 4.7318
14 14 7.9888 -1.6735 3.8111
15 1 8.3852 -0.3176 4.2689
16 1 8.4949 -2.6876 4.7706
17 1 8.5671 -1.9311 2.4678
18 6 3.4877 -0.7126 1.2330
19 1 3.8671 0.3047 1.1367
20 6 4.0125 -1.5641 0.0753
21 1 -0.3633 0.5137 0.8900
22 1 -0.3634 0.5138 -0.8900
23 1 -0.3634 -1.0277 -0.0005
24 1 1.8933 -0.5138 -0.8900
25 1 3.1300 1.4425 -0.0005
26 1 1.6767 1.9563 -0.8900
27 1 1.6766 1.9563 0.8900
28 1 0.3810 -2.0060 1.2258
29 1 1.8523 -2.6511 0.4598
30 1 1.4861 -2.0958 3.4392
31 1 1.4849 -3.7017 2.6698
32 1 3.7078 -3.1438 3.6641
33 1 3.8025 -3.3554 1.8988
34 1 3.8027 -0.7861 4.5108
35 1 5.9074 -2.5683 5.5279
36 1 3.6764 -1.1386 -0.8703
37 1 3.6328 -2.5813 0.1712
38 1 5.1021 -1.5788 0.0998
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000260686422.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:44:58
Heat of formation + Delta-G solvation = -68.979910 kcal
Electronic energy + Delta-G solvation = -17657.923250 eV
Core-core repulsion = 15113.362850 eV
Total energy + Delta-G solvation = -2544.560400 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 227.163 amu
Computer time = 0.41 seconds
Orbital eigenvalues (eV)
-40.87574 -37.49108 -34.57662 -34.01876 -32.87329 -30.78603 -28.26886 -27.86971
-26.40962 -24.30134 -22.76783 -21.10470 -19.20634 -18.80766 -17.26362 -16.98296
-16.43610 -15.98082 -15.57719 -14.98521 -14.61292 -14.31317 -13.91998 -13.52706
-13.31556 -13.28330 -13.09147 -12.90257 -12.79572 -12.75818 -12.42991 -12.28506
-12.17461 -11.96565 -11.89699 -11.66281 -11.29997 -11.14384 -10.63929 -10.45333
-9.80515 -8.86390 -8.11199 -6.29164 1.40056 1.42673 1.50134 2.40152
3.08320 3.15307 3.95665 4.05591 4.15744 4.33433 4.35523 4.46498
4.47668 4.57284 4.70133 4.76652 4.83738 4.91160 4.95732 4.99116
5.04581 5.06248 5.17894 5.21231 5.28907 5.31477 5.44976 5.48476
5.51834 5.63110 5.85783 6.13851 6.19570 6.48205 6.55533 6.78653
7.41980 7.64687 8.88280
Molecular weight = 227.16amu
Principal moments of inertia in cm(-1)
A = 0.038441 B = 0.009345 C = 0.008562
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 728.214261 B = 2995.593292 C = 3269.586811
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.138 4.138
2 C 0.066 3.934
3 C -0.140 4.140
4 N -0.531 5.531
5 C 0.058 3.942
6 C -0.109 4.109
7 C -0.129 4.129
8 C 0.254 3.746
9 O -0.588 6.588
10 C -0.556 4.556
11 H 0.054 0.946
12 C 0.028 3.972
13 N -0.912 5.912
14 Si 0.953 3.047
15 H -0.279 1.279
16 H -0.283 1.283
17 H -0.272 1.272
18 C 0.105 3.895
19 H 0.059 0.941
20 C -0.164 4.164
21 H 0.053 0.947
22 H 0.076 0.924
23 H 0.059 0.941
24 H 0.039 0.961
25 H 0.040 0.960
26 H 0.079 0.921
27 H 0.049 0.951
28 H 0.087 0.913
29 H 0.031 0.969
30 H 0.047 0.953
31 H 0.064 0.936
32 H 0.059 0.941
33 H 0.035 0.965
34 H 0.366 0.634
35 H 0.266 0.734
36 H 0.061 0.939
37 H 0.055 0.945
38 H 0.054 0.946
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -7.056 1.243 -8.450 11.079
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.195 4.195
2 C -0.042 4.042
3 C -0.197 4.197
4 N -0.256 5.256
5 C -0.070 4.070
6 C -0.147 4.147
7 C -0.168 4.168
8 C 0.215 3.785
9 O -0.395 6.395
10 C -0.594 4.594
11 H 0.072 0.928
12 C -0.172 4.172
13 N -0.553 5.553
14 Si 0.779 3.221
15 H -0.205 1.205
16 H -0.208 1.208
17 H -0.197 1.197
18 C -0.003 4.003
19 H 0.077 0.923
20 C -0.223 4.223
21 H 0.072 0.928
22 H 0.095 0.905
23 H 0.078 0.922
24 H 0.057 0.943
25 H 0.060 0.940
26 H 0.098 0.902
27 H 0.069 0.931
28 H 0.105 0.895
29 H 0.049 0.951
30 H 0.066 0.934
31 H 0.083 0.917
32 H 0.078 0.922
33 H 0.054 0.946
34 H 0.214 0.786
35 H 0.076 0.924
36 H 0.080 0.920
37 H 0.074 0.926
38 H 0.073 0.927
Dipole moment (debyes) X Y Z Total
from point charges -7.515 1.757 -8.369 11.384
hybrid contribution 1.918 -0.839 0.284 2.113
sum -5.597 0.918 -8.085 9.876
Atomic orbital electron populations
1.21857 0.93100 1.02184 1.02365 1.21755 0.96558 0.95026 0.90843
1.21827 1.00349 0.95459 1.02074 1.62158 1.07402 1.17205 1.38795
1.22125 0.99737 0.88729 0.96360 1.21514 0.96508 0.99102 0.97556
1.22066 0.94032 0.99539 1.01133 1.18697 0.89845 0.86442 0.83548
1.86176 1.75467 1.59193 1.18671 1.22072 0.93508 1.43903 0.99924
0.92796 1.25639 1.02377 0.93614 0.95558 1.69747 1.36839 1.42284
1.06404 0.85657 0.80875 0.77682 0.77861 1.20474 1.20813 1.19676
1.21431 0.86592 0.98163 0.94128 0.92312 1.22261 1.01797 1.00347
0.97882 0.92789 0.90477 0.92184 0.94277 0.94046 0.90236 0.93145
0.89470 0.95082 0.93369 0.91735 0.92208 0.94595 0.78630 0.92425
0.91979 0.92644 0.92692
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -3.30 8.84 71.98 0.64 -2.66 16
2 C 0.07 1.97 2.41 44.92 0.11 2.08 16
3 C -0.14 -4.02 8.97 71.98 0.65 -3.38 16
4 N -0.53 -19.93 4.36 -846.00 -3.69 -23.62 16
5 C 0.06 2.01 4.84 86.33 0.42 2.43 16
6 C -0.11 -4.34 5.94 30.65 0.18 -4.16 16
7 C -0.13 -6.14 4.48 30.68 0.14 -6.00 16
8 C 0.25 12.74 0.47 -11.49 -0.01 12.74 16
9 O -0.59 -32.05 12.30 -148.98 -1.83 -33.89 16
10 C -0.56 -29.99 7.57 25.60 0.19 -29.79 16
11 H 0.05 2.89 6.53 -2.91 -0.02 2.88 16
12 C 0.03 1.47 5.19 84.65 0.44 1.91 16
13 N -0.91 -49.70 9.75 21.45 0.21 -49.49 16
14 Si 0.95 42.91 29.54 68.60 2.03 44.94 16
15 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16
16 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16
17 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16
18 C 0.11 4.53 1.88 44.94 0.08 4.61 16
19 H 0.06 2.70 6.01 -2.39 -0.01 2.69 16
20 C -0.16 -6.26 7.92 71.98 0.57 -5.69 16
21 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16
22 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16
23 H 0.06 1.36 6.22 -2.38 -0.01 1.34 16
24 H 0.04 1.13 6.46 -2.39 -0.02 1.12 16
25 H 0.04 1.31 6.28 -2.39 -0.02 1.30 16
26 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16
27 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16
28 H 0.09 2.60 5.90 -2.39 -0.01 2.58 16
29 H 0.03 1.04 6.19 -2.39 -0.01 1.03 16
30 H 0.05 2.08 7.80 -2.39 -0.02 2.07 16
31 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16
32 H 0.06 3.18 6.24 -2.39 -0.01 3.16 16
33 H 0.04 1.68 6.56 -2.39 -0.02 1.67 16
34 H 0.37 20.64 7.00 -74.06 -0.52 20.13 16
35 H 0.27 13.87 8.31 -92.70 -0.77 13.10 16
36 H 0.06 2.02 6.54 -2.39 -0.02 2.00 16
37 H 0.05 2.10 4.80 -2.39 -0.01 2.09 16
38 H 0.05 2.23 6.50 -2.39 -0.02 2.21 16
Total: -1.00 -57.76 273.80 0.66 -57.10
By element:
Atomic # 1 Polarization: 32.33 SS G_CDS: 0.54 Total: 32.87 kcal
Atomic # 6 Polarization: -31.32 SS G_CDS: 3.41 Total: -27.91 kcal
Atomic # 7 Polarization: -69.63 SS G_CDS: -3.48 Total: -73.10 kcal
Atomic # 8 Polarization: -32.05 SS G_CDS: -1.83 Total: -33.89 kcal
Atomic # 14 Polarization: 42.91 SS G_CDS: 2.03 Total: 44.94 kcal
Total: -57.76 0.66 -57.10 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000260686422.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -11.885 kcal
(2) G-P(sol) polarization free energy of solvation -57.756 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.641 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.661 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.095 kcal
(6) G-S(sol) free energy of system = (1) + (5) -68.980 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.41 seconds