Wall clock time and date at job start Mon Mar 30 2020 03:20:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 108.96166 * 2 1 4 4 C 1.53811 * 108.98160 * 241.27158 * 2 1 3 5 5 C 1.50815 * 111.62133 * 198.39883 * 4 2 1 6 6 N 1.47632 * 108.04039 * 95.05301 * 5 4 2 7 7 C 1.46904 * 110.99642 * 150.33062 * 6 5 4 8 8 C 1.39780 * 114.77010 * 277.19126 * 6 5 4 9 9 C 1.54430 * 111.76599 * 62.27890 * 8 6 5 10 10 H 1.08993 * 109.54390 * 162.74089 * 9 8 6 11 11 O 1.42897 * 109.54705 * 42.46739 * 9 8 6 12 12 C 1.50749 * 109.02653 * 282.60303 * 9 8 6 13 13 H 1.09002 * 108.85972 * 332.21006 * 12 9 8 14 14 C 1.53003 * 108.85701 * 213.81817 * 12 9 8 15 15 C 1.50699 * 109.46841 * 61.91742 * 14 12 9 16 16 H 1.07995 * 120.00088 * 359.97438 * 15 14 12 17 17 C 1.37878 * 119.99799 * 180.02562 * 15 14 12 18 18 N 1.31513 * 120.00005 * 179.97438 * 17 15 14 19 19 Si 1.86795 * 120.00063 * 359.97438 * 17 15 14 20 20 H 1.48501 * 109.47347 * 90.00112 * 19 17 15 21 21 H 1.48503 * 109.47277 * 210.00013 * 19 17 15 22 22 H 1.48499 * 109.47329 * 330.00198 * 19 17 15 23 23 H 1.08998 * 109.47334 * 301.19225 * 1 2 3 24 24 H 1.08993 * 109.47396 * 61.19230 * 1 2 3 25 25 H 1.09001 * 109.47301 * 181.19580 * 1 2 3 26 26 H 1.09007 * 109.04870 * 318.94407 * 4 2 1 27 27 H 1.08993 * 109.05201 * 77.84718 * 4 2 1 28 28 H 1.08996 * 109.75352 * 214.69283 * 5 4 2 29 29 H 1.09005 * 109.74424 * 335.37323 * 5 4 2 30 30 H 1.09000 * 109.47408 * 56.05398 * 7 6 5 31 31 H 1.09007 * 109.46972 * 176.05262 * 7 6 5 32 32 H 1.09002 * 109.46921 * 296.04488 * 7 6 5 33 33 H 1.08995 * 109.01789 * 182.86422 * 8 6 5 34 34 H 1.08997 * 109.02158 * 301.69096 * 8 6 5 35 35 H 0.96703 * 114.00158 * 60.45593 * 11 9 8 36 36 H 1.09000 * 109.47049 * 181.91595 * 14 12 9 37 37 H 1.08992 * 109.47021 * 301.91718 * 14 12 9 38 38 H 0.96998 * 120.00046 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8841 1.0308 0.0000 4 6 2.0303 -0.6991 -1.2754 5 6 3.4690 -1.1317 -1.1441 6 7 3.4844 -2.5418 -0.7070 7 6 4.6802 -3.2344 -1.2053 8 6 3.3339 -2.7297 0.6700 9 6 1.9717 -2.2052 1.1740 10 1 1.7577 -2.6300 2.1547 11 8 0.9447 -2.5806 0.2540 12 6 2.0314 -0.7025 1.2775 13 1 3.0630 -0.4028 1.4624 14 6 1.1696 -0.2535 2.4594 15 6 1.7234 -0.8355 3.7344 16 1 2.6017 -1.4631 3.7048 17 6 1.1079 -0.5675 4.9388 18 7 1.5908 -1.0757 6.0514 19 14 -0.4118 0.5175 4.9900 20 1 -1.6262 -0.3241 4.8401 21 1 -0.4642 1.2351 6.2891 22 1 -0.3534 1.5040 3.8815 23 1 -0.3634 0.5322 0.8791 24 1 -0.3634 0.4952 -0.9004 25 1 -0.3634 -1.0274 0.0214 26 1 1.4113 -1.5757 -1.4668 27 1 1.9409 -0.0116 -2.1164 28 1 3.9709 -1.0393 -2.1072 29 1 3.9743 -0.5106 -0.4044 30 1 5.5722 -2.6992 -0.8798 31 1 4.7022 -4.2505 -0.8113 32 1 4.6534 -3.2676 -2.2945 33 1 3.4097 -3.7938 0.8935 34 1 4.1327 -2.2010 1.1900 35 1 0.8502 -3.5360 0.1384 36 1 1.1784 0.8346 2.5228 37 1 0.1466 -0.6009 2.3157 38 1 1.1580 -0.8869 6.8988 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260724607.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:55 Heat of formation + Delta-G solvation = -48.766636 kcal Electronic energy + Delta-G solvation = -17396.419497 eV Core-core repulsion = 14852.735610 eV Total energy + Delta-G solvation = -2543.683887 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.69325 -36.00311 -34.65839 -32.95268 -31.24880 -28.89363 -28.32361 -25.56052 -24.03958 -22.75647 -21.15437 -20.21145 -18.02281 -17.11617 -16.26636 -15.59746 -15.07084 -14.72644 -14.20245 -13.92483 -13.20375 -12.87012 -12.80578 -12.70394 -12.35259 -12.07696 -11.75920 -11.66680 -11.29957 -11.11989 -11.00844 -10.67966 -10.37274 -10.19154 -9.98988 -9.77322 -9.43988 -9.31648 -8.89532 -8.83846 -8.49514 -7.88203 -6.03155 -3.99885 3.33127 3.40356 3.45424 4.20801 4.47773 5.01111 5.19439 5.24616 5.33060 5.41523 5.48259 5.61393 5.68241 5.72405 5.85317 5.90933 5.95962 6.09652 6.17974 6.26015 6.35268 6.42400 6.49950 6.72400 6.76611 6.87659 6.96723 7.06004 7.24298 7.40502 7.43229 7.51714 7.66452 7.83712 8.42123 8.54501 9.00896 9.60657 11.10045 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.034399 B = 0.009009 C = 0.007847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.785942 B = 3107.117776 C = 3567.430864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.071 4.071 3 H 0.046 0.954 4 C -0.113 4.113 5 C 0.069 3.931 6 N -0.547 5.547 7 C 0.030 3.970 8 C 0.039 3.961 9 C 0.119 3.881 10 H 0.085 0.915 11 O -0.544 6.544 12 C -0.063 4.063 13 H 0.060 0.940 14 C -0.011 4.011 15 C -0.519 4.519 16 H 0.071 0.929 17 C 0.067 3.933 18 N -0.905 5.905 19 Si 0.878 3.122 20 H -0.277 1.277 21 H -0.289 1.289 22 H -0.265 1.265 23 H 0.050 0.950 24 H 0.031 0.969 25 H 0.078 0.922 26 H 0.099 0.901 27 H 0.043 0.957 28 H 0.061 0.939 29 H 0.038 0.962 30 H 0.020 0.980 31 H 0.061 0.939 32 H 0.062 0.938 33 H 0.063 0.937 34 H 0.025 0.975 35 H 0.358 0.642 36 H 0.013 0.987 37 H 0.022 0.978 38 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.093 -2.222 -14.075 14.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.090 4.090 3 H 0.065 0.935 4 C -0.151 4.151 5 C -0.057 4.057 6 N -0.271 5.271 7 C -0.118 4.118 8 C -0.091 4.091 9 C 0.060 3.940 10 H 0.103 0.897 11 O -0.348 6.348 12 C -0.082 4.082 13 H 0.079 0.921 14 C -0.049 4.049 15 C -0.556 4.556 16 H 0.089 0.911 17 C -0.134 4.134 18 N -0.544 5.544 19 Si 0.705 3.295 20 H -0.203 1.203 21 H -0.216 1.216 22 H -0.190 1.190 23 H 0.069 0.931 24 H 0.050 0.950 25 H 0.097 0.903 26 H 0.117 0.883 27 H 0.061 0.939 28 H 0.080 0.920 29 H 0.057 0.943 30 H 0.038 0.962 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.082 0.918 34 H 0.043 0.957 35 H 0.203 0.797 36 H 0.032 0.968 37 H 0.041 0.959 38 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 1.615 -1.755 -14.093 14.293 hybrid contribution 0.199 0.364 0.758 0.864 sum 1.813 -1.391 -13.334 13.529 Atomic orbital electron populations 1.22014 0.95597 1.03100 0.99519 1.21304 0.96120 0.97398 0.94166 0.93500 1.21560 0.95872 1.01221 0.96401 1.21781 0.98088 0.87016 0.98864 1.58817 1.38604 1.14670 1.15049 1.22349 0.90707 0.98436 1.00316 1.21780 0.99256 1.00484 0.87581 1.21935 0.84244 0.95747 0.92036 0.89734 1.86591 1.56186 1.26389 1.65605 1.20952 0.99869 0.92445 0.94929 0.92127 1.19790 0.95746 0.96179 0.93150 1.21195 1.13609 1.30891 0.89946 0.91096 1.25008 0.97169 0.95581 0.95654 1.69916 1.40970 1.45325 0.98223 0.86806 0.83853 0.81491 0.77331 1.20289 1.21566 1.18988 0.93081 0.95027 0.90298 0.88307 0.93864 0.92028 0.94323 0.96186 0.91974 0.91923 0.91814 0.95730 0.79695 0.96842 0.95941 0.92839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.55 7.94 37.16 0.29 -2.25 16 2 C -0.07 -1.25 2.50 -89.58 -0.22 -1.47 16 3 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 4 C -0.11 -1.71 4.75 -27.41 -0.13 -1.84 16 5 C 0.07 1.00 5.36 -4.52 -0.02 0.97 16 6 N -0.55 -7.87 3.86 -248.32 -0.96 -8.83 16 7 C 0.03 0.35 9.44 60.07 0.57 0.92 16 8 C 0.04 0.63 4.72 -6.74 -0.03 0.60 16 9 C 0.12 2.19 3.04 -27.11 -0.08 2.11 16 10 H 0.08 1.80 6.36 -51.93 -0.33 1.47 16 11 O -0.54 -8.94 7.38 -35.23 -0.26 -9.20 16 12 C -0.06 -1.27 1.44 -91.13 -0.13 -1.40 16 13 H 0.06 1.27 6.58 -51.93 -0.34 0.93 16 14 C -0.01 -0.27 2.27 -27.88 -0.06 -0.34 16 15 C -0.52 -14.47 8.46 -34.44 -0.29 -14.76 16 16 H 0.07 2.10 7.48 -52.49 -0.39 1.71 16 17 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 18 N -0.91 -27.78 13.96 55.43 0.77 -27.01 16 19 Si 0.88 22.02 27.47 -169.99 -4.67 17.35 16 20 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 21 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 22 H -0.27 -6.46 6.54 56.52 0.37 -6.09 16 23 H 0.05 0.97 6.38 -51.93 -0.33 0.63 16 24 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.08 1.43 5.80 -51.93 -0.30 1.13 16 26 H 0.10 1.59 5.73 -51.92 -0.30 1.30 16 27 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.06 0.77 7.81 -51.93 -0.41 0.37 16 29 H 0.04 0.61 6.67 -51.93 -0.35 0.26 16 30 H 0.02 0.23 8.14 -51.93 -0.42 -0.19 16 31 H 0.06 0.68 7.78 -51.92 -0.40 0.28 16 32 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 33 H 0.06 0.95 7.76 -51.93 -0.40 0.55 16 34 H 0.02 0.44 7.55 -51.93 -0.39 0.04 16 35 H 0.36 4.70 9.09 45.56 0.41 5.12 16 36 H 0.01 0.33 7.19 -51.93 -0.37 -0.04 16 37 H 0.02 0.54 6.06 -51.93 -0.31 0.23 16 38 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 276.07 15.07 4.16 4.16 Total: -1.00 -29.97 276.07 -6.67 -36.63 By element: Atomic # 1 Polarization: 8.03 SS G_CDS: -5.50 Total: 2.53 kcal Atomic # 6 Polarization: -15.42 SS G_CDS: -0.21 Total: -15.64 kcal Atomic # 7 Polarization: -35.66 SS G_CDS: -0.19 Total: -35.84 kcal Atomic # 8 Polarization: -8.94 SS G_CDS: -0.26 Total: -9.20 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -4.67 Total: 17.35 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -29.97 -6.67 -36.63 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260724607.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.133 kcal (2) G-P(sol) polarization free energy of solvation -29.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds