Wall clock time and date at job start Mon Mar 30 2020 03:21:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08993 * 108.63961 * 2 1 4 4 C 1.54297 * 108.76831 * 241.75456 * 2 1 3 5 5 C 1.54058 * 112.29018 * 197.38049 * 4 2 1 6 6 N 1.44273 * 111.97782 * 318.92206 * 5 4 2 7 7 C 1.46902 * 111.00001 * 219.30946 * 6 5 4 8 8 C 1.47794 * 109.45907 * 96.43886 * 6 5 4 9 9 C 1.45858 * 112.92870 * 276.72952 * 8 6 5 10 10 H 1.09008 * 109.05779 * 300.78316 * 9 8 6 11 11 O 1.42894 * 109.00624 * 181.82742 * 9 8 6 12 12 C 1.50460 * 108.77249 * 118.25487 * 2 1 3 13 13 H 1.09001 * 109.67688 * 93.18973 * 12 2 1 14 14 C 1.53002 * 109.57035 * 332.87902 * 12 2 1 15 15 C 1.50703 * 109.47207 * 175.62597 * 14 12 2 16 16 H 1.07994 * 119.99603 * 359.97438 * 15 14 12 17 17 C 1.37875 * 119.99838 * 180.02562 * 15 14 12 18 18 N 1.31513 * 120.00380 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 119.99848 * 180.02562 * 17 15 14 20 20 H 1.48506 * 109.47297 * 359.97438 * 19 17 15 21 21 H 1.48503 * 109.47261 * 239.99776 * 19 17 15 22 22 H 1.48500 * 109.47454 * 119.99769 * 19 17 15 23 23 H 1.08993 * 109.46864 * 301.74664 * 1 2 3 24 24 H 1.09000 * 109.46902 * 61.74662 * 1 2 3 25 25 H 1.09000 * 109.47096 * 181.74713 * 1 2 3 26 26 H 1.09006 * 108.91633 * 76.65803 * 4 2 1 27 27 H 1.09000 * 108.92179 * 318.10701 * 4 2 1 28 28 H 1.08997 * 108.98324 * 198.27633 * 5 4 2 29 29 H 1.09004 * 108.91407 * 79.51816 * 5 4 2 30 30 H 1.08999 * 109.47032 * 298.02299 * 7 6 5 31 31 H 1.09006 * 109.46881 * 58.02544 * 7 6 5 32 32 H 1.09008 * 109.47195 * 178.02291 * 7 6 5 33 33 H 1.09002 * 108.79189 * 155.83648 * 8 6 5 34 34 H 1.09004 * 108.79577 * 37.61662 * 8 6 5 35 35 H 0.96707 * 113.99796 * 57.95209 * 11 9 8 36 36 H 1.09005 * 109.47493 * 55.62597 * 14 12 2 37 37 H 1.08998 * 109.47006 * 295.62561 * 14 12 2 38 38 H 0.97001 * 119.99667 * 0.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8784 1.0328 0.0000 4 6 2.0265 -0.6914 -1.2870 5 6 3.5025 -1.1212 -1.1873 6 7 4.3139 -0.1197 -0.5391 7 6 5.6250 -0.0016 -1.1910 8 6 4.4625 -0.4572 0.8921 9 6 3.3351 -0.0089 1.7017 10 1 3.2378 1.0728 1.6086 11 8 3.5842 -0.3386 3.0696 12 6 2.0142 -0.6744 1.2548 13 1 2.1864 -1.7329 1.0596 14 6 0.9643 -0.5207 2.3571 15 6 1.4023 -1.2872 3.5785 16 1 2.3358 -1.8300 3.5692 17 6 0.6105 -1.2963 4.7072 18 7 -0.5266 -0.6357 4.7183 19 14 1.1537 -2.2458 6.2214 20 1 2.4608 -2.8982 5.9541 21 1 0.1408 -3.2823 6.5455 22 1 1.2912 -1.3124 7.3682 23 1 -0.3633 0.5407 0.8739 24 1 -0.3633 0.4865 -0.9052 25 1 -0.3633 -1.0272 0.0313 26 1 1.9149 -0.0021 -2.1240 27 1 1.4135 -1.5732 -1.4735 28 1 3.8896 -1.2957 -2.1912 29 1 3.5627 -2.0489 -0.6182 30 1 6.1583 -0.9486 -1.1088 31 1 5.4864 0.2473 -2.2432 32 1 6.2031 0.7844 -0.7048 33 1 5.3730 0.0080 1.2699 34 1 4.5569 -1.5387 0.9900 35 1 4.3986 0.0436 3.4243 36 1 0.0091 -0.9113 2.0062 37 1 0.8547 0.5339 2.6099 38 1 -0.8084 -0.1423 3.9321 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260724611.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:03 Heat of formation + Delta-G solvation = -47.831755 kcal Electronic energy + Delta-G solvation = -17269.893410 eV Core-core repulsion = 14726.250062 eV Total energy + Delta-G solvation = -2543.643347 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.57620 -36.12063 -35.35727 -32.75190 -30.70516 -29.06615 -27.88686 -25.33469 -23.98434 -22.52779 -21.73960 -20.13929 -18.50966 -16.96374 -16.15695 -15.49867 -15.28859 -14.72134 -14.20269 -13.56205 -13.28668 -13.18131 -12.76408 -12.66434 -12.26335 -12.00439 -11.78816 -11.65863 -11.12937 -10.93874 -10.76725 -10.63693 -10.40362 -10.25718 -10.01577 -9.90869 -9.61144 -9.10220 -8.95800 -8.25005 -8.12057 -8.01507 -6.03737 -3.64620 3.57518 3.62239 3.76464 3.95717 4.77072 4.95620 5.02152 5.15585 5.25085 5.35744 5.45878 5.48754 5.60551 5.68329 5.77108 5.83223 5.83557 5.97032 6.01185 6.12908 6.25167 6.26577 6.34304 6.46644 6.65807 6.82238 6.83516 6.97387 7.13354 7.17126 7.27231 7.59645 7.77726 8.53051 8.60645 8.91988 9.24325 10.00056 11.35845 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.033037 B = 0.008822 C = 0.007431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 847.331522 B = 3173.033889 C = 3767.132685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.077 4.077 3 H 0.064 0.936 4 C -0.103 4.103 5 C 0.054 3.946 6 N -0.530 5.530 7 C 0.028 3.972 8 C 0.027 3.973 9 C 0.115 3.885 10 H 0.042 0.958 11 O -0.507 6.507 12 C -0.057 4.057 13 H 0.056 0.944 14 C 0.018 3.982 15 C -0.550 4.550 16 H 0.065 0.935 17 C 0.001 3.999 18 N -0.933 5.933 19 Si 1.072 2.928 20 H -0.292 1.292 21 H -0.294 1.294 22 H -0.292 1.292 23 H 0.065 0.935 24 H 0.037 0.963 25 H 0.052 0.948 26 H 0.055 0.945 27 H 0.058 0.942 28 H 0.057 0.943 29 H 0.042 0.958 30 H 0.022 0.978 31 H 0.066 0.934 32 H 0.065 0.935 33 H 0.060 0.940 34 H 0.043 0.957 35 H 0.334 0.666 36 H 0.013 0.987 37 H 0.003 0.997 38 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.975 0.956 -11.829 15.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.095 4.095 3 H 0.083 0.917 4 C -0.141 4.141 5 C -0.075 4.075 6 N -0.255 5.255 7 C -0.120 4.120 8 C -0.100 4.100 9 C 0.055 3.945 10 H 0.060 0.940 11 O -0.307 6.307 12 C -0.076 4.076 13 H 0.075 0.925 14 C -0.019 4.019 15 C -0.588 4.588 16 H 0.083 0.917 17 C -0.199 4.199 18 N -0.572 5.572 19 Si 0.903 3.097 20 H -0.218 1.218 21 H -0.221 1.221 22 H -0.219 1.219 23 H 0.084 0.916 24 H 0.056 0.944 25 H 0.071 0.929 26 H 0.074 0.926 27 H 0.077 0.923 28 H 0.076 0.924 29 H 0.060 0.940 30 H 0.040 0.960 31 H 0.085 0.915 32 H 0.084 0.916 33 H 0.078 0.922 34 H 0.061 0.939 35 H 0.178 0.822 36 H 0.031 0.969 37 H 0.021 0.979 38 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 8.750 0.679 -10.379 13.592 hybrid contribution 1.538 -0.009 -1.505 2.152 sum 10.288 0.670 -11.884 15.732 Atomic orbital electron populations 1.22025 0.95760 1.01640 1.00765 1.20795 0.95110 0.99930 0.93712 0.91725 1.22012 0.94059 0.99966 0.98055 1.21956 0.94558 0.93057 0.97911 1.61497 1.13808 1.47838 1.02367 1.22450 0.90163 0.99972 0.99450 1.21950 0.99733 0.99818 0.88519 1.20536 0.94023 0.97557 0.82369 0.94041 1.87651 1.43582 1.75660 1.23848 1.20860 0.94397 0.97884 0.94423 0.92541 1.19380 0.93023 0.96309 0.93184 1.22192 1.06587 1.31621 0.98426 0.91747 1.25686 0.94692 0.98113 1.01421 1.70720 1.22071 1.31891 1.32522 0.83502 0.74848 0.75809 0.75546 1.21787 1.22072 1.21938 0.91592 0.94404 0.92941 0.92611 0.92294 0.92402 0.93961 0.95967 0.91526 0.91580 0.92194 0.93901 0.82191 0.96905 0.97928 0.92547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.57 7.66 37.16 0.28 -2.29 16 2 C -0.08 -1.36 2.21 -91.21 -0.20 -1.56 16 3 H 0.06 1.18 7.38 -51.93 -0.38 0.79 16 4 C -0.10 -1.51 5.51 -25.50 -0.14 -1.65 16 5 C 0.05 0.75 5.18 -4.68 -0.02 0.73 16 6 N -0.53 -7.52 4.48 -247.88 -1.11 -8.63 16 7 C 0.03 0.31 9.19 60.07 0.55 0.86 16 8 C 0.03 0.43 4.46 -6.71 -0.03 0.40 16 9 C 0.11 2.20 2.85 -29.32 -0.08 2.12 16 10 H 0.04 0.82 7.59 -51.92 -0.39 0.42 16 11 O -0.51 -10.79 9.22 -35.23 -0.32 -11.12 16 12 C -0.06 -1.20 1.66 -91.10 -0.15 -1.35 16 13 H 0.06 1.25 7.16 -51.93 -0.37 0.88 16 14 C 0.02 0.46 2.42 -27.88 -0.07 0.39 16 15 C -0.55 -15.96 7.26 -34.44 -0.25 -16.21 16 16 H 0.06 1.90 6.11 -52.49 -0.32 1.58 16 17 C 0.00 0.04 5.46 -17.82 -0.10 -0.06 16 18 N -0.93 -29.76 13.65 55.43 0.76 -29.01 16 19 Si 1.07 26.98 29.90 -169.99 -5.08 21.89 16 20 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 21 H -0.29 -7.26 7.11 56.52 0.40 -6.85 16 22 H -0.29 -7.25 7.11 56.52 0.40 -6.84 16 23 H 0.07 1.31 6.36 -51.93 -0.33 0.98 16 24 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.05 0.95 7.71 -51.93 -0.40 0.55 16 26 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 27 H 0.06 0.84 7.98 -51.93 -0.41 0.42 16 28 H 0.06 0.68 7.49 -51.93 -0.39 0.29 16 29 H 0.04 0.64 6.51 -51.93 -0.34 0.30 16 30 H 0.02 0.23 8.14 -51.93 -0.42 -0.19 16 31 H 0.07 0.65 8.01 -51.93 -0.42 0.23 16 32 H 0.07 0.68 8.05 -51.92 -0.42 0.26 16 33 H 0.06 0.83 7.73 -51.93 -0.40 0.43 16 34 H 0.04 0.72 7.24 -51.93 -0.38 0.34 16 35 H 0.33 5.45 9.02 45.56 0.41 5.86 16 36 H 0.01 0.35 5.87 -51.93 -0.30 0.04 16 37 H 0.00 0.07 7.79 -51.93 -0.40 -0.33 16 38 H 0.26 8.40 7.22 -40.82 -0.29 8.11 16 LS Contribution 282.08 15.07 4.25 4.25 Total: -1.00 -32.77 282.08 -7.33 -40.10 By element: Atomic # 1 Polarization: 6.74 SS G_CDS: -5.61 Total: 1.13 kcal Atomic # 6 Polarization: -18.41 SS G_CDS: -0.21 Total: -18.62 kcal Atomic # 7 Polarization: -37.28 SS G_CDS: -0.35 Total: -37.63 kcal Atomic # 8 Polarization: -10.79 SS G_CDS: -0.32 Total: -11.12 kcal Atomic # 14 Polarization: 26.98 SS G_CDS: -5.08 Total: 21.89 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -32.77 -7.33 -40.10 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260724611.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.729 kcal (2) G-P(sol) polarization free energy of solvation -32.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds