Wall clock time and date at job start Mon Mar 30 2020 03:21:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08993 * 108.63961 * 2 1 4 4 C 1.54297 * 108.76831 * 241.75456 * 2 1 3 5 5 C 1.54058 * 112.29018 * 197.38049 * 4 2 1 6 6 N 1.44273 * 111.97782 * 318.92206 * 5 4 2 7 7 C 1.46902 * 111.00001 * 219.30946 * 6 5 4 8 8 C 1.47794 * 109.45907 * 96.43886 * 6 5 4 9 9 C 1.45858 * 112.92870 * 276.72952 * 8 6 5 10 10 H 1.09008 * 109.05779 * 300.78316 * 9 8 6 11 11 O 1.42894 * 109.00624 * 181.82742 * 9 8 6 12 12 C 1.50460 * 108.77249 * 118.25487 * 2 1 3 13 13 H 1.09001 * 109.67688 * 93.18973 * 12 2 1 14 14 C 1.53002 * 109.57035 * 332.87902 * 12 2 1 15 15 C 1.50703 * 109.47207 * 175.62597 * 14 12 2 16 16 H 1.07994 * 119.99603 * 359.97438 * 15 14 12 17 17 C 1.37875 * 119.99838 * 180.02562 * 15 14 12 18 18 N 1.31513 * 120.00380 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 119.99848 * 180.02562 * 17 15 14 20 20 H 1.48506 * 109.47297 * 359.97438 * 19 17 15 21 21 H 1.48503 * 109.47261 * 239.99776 * 19 17 15 22 22 H 1.48500 * 109.47454 * 119.99769 * 19 17 15 23 23 H 1.08993 * 109.46864 * 301.74664 * 1 2 3 24 24 H 1.09000 * 109.46902 * 61.74662 * 1 2 3 25 25 H 1.09000 * 109.47096 * 181.74713 * 1 2 3 26 26 H 1.09006 * 108.91633 * 76.65803 * 4 2 1 27 27 H 1.09000 * 108.92179 * 318.10701 * 4 2 1 28 28 H 1.08997 * 108.98324 * 198.27633 * 5 4 2 29 29 H 1.09004 * 108.91407 * 79.51816 * 5 4 2 30 30 H 1.08999 * 109.47032 * 298.02299 * 7 6 5 31 31 H 1.09006 * 109.46881 * 58.02544 * 7 6 5 32 32 H 1.09008 * 109.47195 * 178.02291 * 7 6 5 33 33 H 1.09002 * 108.79189 * 155.83648 * 8 6 5 34 34 H 1.09004 * 108.79577 * 37.61662 * 8 6 5 35 35 H 0.96707 * 113.99796 * 57.95209 * 11 9 8 36 36 H 1.09005 * 109.47493 * 55.62597 * 14 12 2 37 37 H 1.08998 * 109.47006 * 295.62561 * 14 12 2 38 38 H 0.97001 * 119.99667 * 0.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8784 1.0328 0.0000 4 6 2.0265 -0.6914 -1.2870 5 6 3.5025 -1.1212 -1.1873 6 7 4.3139 -0.1197 -0.5391 7 6 5.6250 -0.0016 -1.1910 8 6 4.4625 -0.4572 0.8921 9 6 3.3351 -0.0089 1.7017 10 1 3.2378 1.0728 1.6086 11 8 3.5842 -0.3386 3.0696 12 6 2.0142 -0.6744 1.2548 13 1 2.1864 -1.7329 1.0596 14 6 0.9643 -0.5207 2.3571 15 6 1.4023 -1.2872 3.5785 16 1 2.3358 -1.8300 3.5692 17 6 0.6105 -1.2963 4.7072 18 7 -0.5266 -0.6357 4.7183 19 14 1.1537 -2.2458 6.2214 20 1 2.4608 -2.8982 5.9541 21 1 0.1408 -3.2823 6.5455 22 1 1.2912 -1.3124 7.3682 23 1 -0.3633 0.5407 0.8739 24 1 -0.3633 0.4865 -0.9052 25 1 -0.3633 -1.0272 0.0313 26 1 1.9149 -0.0021 -2.1240 27 1 1.4135 -1.5732 -1.4735 28 1 3.8896 -1.2957 -2.1912 29 1 3.5627 -2.0489 -0.6182 30 1 6.1583 -0.9486 -1.1088 31 1 5.4864 0.2473 -2.2432 32 1 6.2031 0.7844 -0.7048 33 1 5.3730 0.0080 1.2699 34 1 4.5569 -1.5387 0.9900 35 1 4.3986 0.0436 3.4243 36 1 0.0091 -0.9113 2.0062 37 1 0.8547 0.5339 2.6099 38 1 -0.8084 -0.1423 3.9321 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260724611.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:01 Heat of formation + Delta-G solvation = -71.899681 kcal Electronic energy + Delta-G solvation = -17270.937073 eV Core-core repulsion = 14726.250062 eV Total energy + Delta-G solvation = -2544.687011 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.97034 -37.50646 -36.90995 -34.87058 -32.22484 -30.36962 -29.59087 -26.75302 -25.65045 -23.96874 -23.47360 -21.53496 -20.03576 -18.95866 -17.87688 -16.76315 -16.51862 -16.17437 -15.61031 -15.40964 -15.03629 -14.53940 -14.21018 -14.05107 -13.67260 -13.45559 -13.27256 -13.04485 -12.94969 -12.63520 -12.31690 -12.14621 -12.01166 -11.90670 -11.64273 -11.44321 -11.21220 -10.74824 -10.69968 -10.37267 -10.28667 -9.30948 -8.44580 -6.05510 1.52826 1.63589 1.80191 2.67064 2.84183 3.33712 3.57242 3.83334 3.97725 4.01857 4.19278 4.21345 4.37416 4.42492 4.48548 4.56282 4.64029 4.70181 4.79001 4.89094 4.94972 4.99920 5.01076 5.05458 5.08315 5.21001 5.34077 5.35592 5.45442 5.54663 5.74125 6.02444 6.22135 6.30282 6.51733 6.85627 7.18988 7.67969 8.95157 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.033037 B = 0.008822 C = 0.007431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 847.331522 B = 3173.033889 C = 3767.132685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.072 4.072 3 H 0.061 0.939 4 C -0.098 4.098 5 C 0.053 3.947 6 N -0.539 5.539 7 C 0.027 3.973 8 C 0.037 3.963 9 C 0.120 3.880 10 H 0.035 0.965 11 O -0.542 6.542 12 C -0.052 4.052 13 H 0.043 0.957 14 C 0.025 3.975 15 C -0.550 4.550 16 H 0.062 0.938 17 C -0.058 4.058 18 N -0.961 5.961 19 Si 1.120 2.880 20 H -0.273 1.273 21 H -0.286 1.286 22 H -0.286 1.286 23 H 0.032 0.968 24 H 0.069 0.931 25 H 0.042 0.958 26 H 0.077 0.923 27 H 0.062 0.938 28 H 0.087 0.913 29 H 0.027 0.973 30 H 0.029 0.971 31 H 0.084 0.916 32 H 0.074 0.926 33 H 0.083 0.917 34 H 0.032 0.968 35 H 0.358 0.642 36 H -0.005 1.005 37 H -0.027 1.027 38 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.025 0.627 -13.270 17.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.091 4.091 3 H 0.079 0.921 4 C -0.136 4.136 5 C -0.075 4.075 6 N -0.265 5.265 7 C -0.120 4.120 8 C -0.090 4.090 9 C 0.060 3.940 10 H 0.053 0.947 11 O -0.346 6.346 12 C -0.071 4.071 13 H 0.062 0.938 14 C -0.011 4.011 15 C -0.589 4.589 16 H 0.080 0.920 17 C -0.252 4.252 18 N -0.602 5.602 19 Si 0.944 3.056 20 H -0.198 1.198 21 H -0.212 1.212 22 H -0.212 1.212 23 H 0.052 0.948 24 H 0.088 0.912 25 H 0.061 0.939 26 H 0.096 0.904 27 H 0.081 0.919 28 H 0.106 0.894 29 H 0.046 0.954 30 H 0.048 0.952 31 H 0.102 0.898 32 H 0.093 0.907 33 H 0.101 0.899 34 H 0.050 0.950 35 H 0.204 0.796 36 H 0.013 0.987 37 H -0.009 1.009 38 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 10.826 0.358 -11.847 16.053 hybrid contribution 0.911 0.143 -1.100 1.435 sum 11.736 0.501 -12.947 17.482 Atomic orbital electron populations 1.21950 0.96163 1.00861 1.00824 1.20728 0.94750 0.99715 0.93897 0.92056 1.21976 0.94879 1.00303 0.96432 1.21977 0.94019 0.92246 0.99286 1.61454 1.15778 1.47778 1.01458 1.22543 0.88542 1.00712 1.00217 1.21682 0.98743 0.99129 0.89490 1.20492 0.94406 0.96869 0.82206 0.94717 1.87480 1.45479 1.76326 1.25337 1.20759 0.94130 0.97816 0.94350 0.93837 1.19249 0.93901 0.93725 0.94272 1.22531 1.06171 1.30839 0.99328 0.92001 1.27194 0.94312 0.98634 1.05028 1.70863 1.23580 1.33720 1.32050 0.82878 0.75436 0.74944 0.72319 1.19756 1.21232 1.21206 0.94836 0.91209 0.93899 0.90427 0.91886 0.89427 0.95450 0.95225 0.89751 0.90735 0.89875 0.94962 0.79570 0.98724 1.00879 0.94187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.06 7.66 71.98 0.55 -4.51 16 2 C -0.07 -2.52 2.21 -11.17 -0.02 -2.55 16 3 H 0.06 2.18 7.38 -2.39 -0.02 2.17 16 4 C -0.10 -2.63 5.51 31.39 0.17 -2.46 16 5 C 0.05 1.33 5.18 87.15 0.45 1.78 16 6 N -0.54 -13.68 4.48 -938.15 -4.21 -17.89 16 7 C 0.03 0.49 9.19 127.69 1.17 1.67 16 8 C 0.04 1.10 4.46 83.94 0.37 1.48 16 9 C 0.12 4.55 2.85 28.92 0.08 4.63 16 10 H 0.03 1.36 7.59 -2.38 -0.02 1.34 16 11 O -0.54 -23.04 9.22 -148.98 -1.37 -24.41 16 12 C -0.05 -2.21 1.66 -11.10 -0.02 -2.23 16 13 H 0.04 1.95 7.16 -2.39 -0.02 1.93 16 14 C 0.03 1.37 2.42 29.85 0.07 1.44 16 15 C -0.55 -32.72 7.26 25.60 0.19 -32.53 16 16 H 0.06 3.68 6.11 -2.91 -0.02 3.66 16 17 C -0.06 -3.57 5.46 84.65 0.46 -3.10 16 18 N -0.96 -63.28 13.65 21.45 0.29 -62.99 16 19 Si 1.12 54.56 29.90 68.60 2.05 56.61 16 20 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 21 H -0.29 -13.49 7.11 99.48 0.71 -12.79 16 22 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 23 H 0.03 1.39 6.36 -2.39 -0.02 1.37 16 24 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 25 H 0.04 1.59 7.71 -2.39 -0.02 1.57 16 26 H 0.08 1.78 8.14 -2.38 -0.02 1.76 16 27 H 0.06 1.65 7.98 -2.39 -0.02 1.63 16 28 H 0.09 1.68 7.49 -2.39 -0.02 1.66 16 29 H 0.03 0.77 6.51 -2.39 -0.02 0.75 16 30 H 0.03 0.50 8.14 -2.39 -0.02 0.48 16 31 H 0.08 1.26 8.01 -2.38 -0.02 1.24 16 32 H 0.07 1.23 8.05 -2.38 -0.02 1.21 16 33 H 0.08 2.06 7.73 -2.39 -0.02 2.04 16 34 H 0.03 1.03 7.24 -2.39 -0.02 1.01 16 35 H 0.36 11.35 9.02 -74.05 -0.67 10.68 16 36 H -0.01 -0.31 5.87 -2.38 -0.01 -0.32 16 37 H -0.03 -1.61 7.79 -2.39 -0.02 -1.63 16 38 H 0.25 16.65 7.22 -92.71 -0.67 15.98 16 Total: -1.00 -72.42 282.08 0.71 -71.71 By element: Atomic # 1 Polarization: 12.89 SS G_CDS: 0.46 Total: 13.35 kcal Atomic # 6 Polarization: -39.87 SS G_CDS: 3.48 Total: -36.39 kcal Atomic # 7 Polarization: -76.96 SS G_CDS: -3.91 Total: -80.88 kcal Atomic # 8 Polarization: -23.04 SS G_CDS: -1.37 Total: -24.41 kcal Atomic # 14 Polarization: 54.56 SS G_CDS: 2.05 Total: 56.61 kcal Total: -72.42 0.71 -71.71 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260724611.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.191 kcal (2) G-P(sol) polarization free energy of solvation -72.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.709 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds