Wall clock time and date at job start Mon Mar 30 2020 03:08:57
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52996 * 1
3 3 H 1.09008 * 109.45849 * 2 1
4 4 C 1.53039 * 109.46366 * 240.02649 * 2 1 3
5 5 C 1.53126 * 109.28009 * 180.80213 * 4 2 1
6 6 H 1.09000 * 109.52323 * 177.62249 * 5 4 2
7 7 O 1.42900 * 109.52252 * 297.75244 * 5 4 2
8 8 C 1.53099 * 109.15071 * 57.65227 * 5 4 2
9 9 H 1.09009 * 109.50682 * 62.29317 * 8 5 4
10 10 C 1.53008 * 109.48809 * 182.39661 * 8 5 4
11 11 C 1.50700 * 109.47087 * 294.81704 * 10 8 5
12 12 H 1.07997 * 120.00032 * 359.97438 * 11 10 8
13 13 C 1.37875 * 119.99511 * 180.02562 * 11 10 8
14 14 N 1.31509 * 120.00337 * 359.97438 * 13 11 10
15 15 Si 1.86807 * 119.99560 * 179.97438 * 13 11 10
16 16 H 1.48495 * 109.47142 * 359.97438 * 15 13 11
17 17 H 1.48495 * 109.47012 * 119.99691 * 15 13 11
18 18 H 1.48501 * 109.46945 * 239.99523 * 15 13 11
19 19 C 1.53034 * 109.29509 * 302.33888 * 8 5 4
20 20 H 1.09002 * 109.46271 * 299.17460 * 19 8 5
21 21 C 1.53005 * 109.46475 * 179.19463 * 19 8 5
22 22 N 1.46847 * 109.51345 * 59.18740 * 19 8 5
23 23 C 1.46898 * 110.99897 * 174.16738 * 22 19 8
24 24 H 1.09005 * 109.46897 * 300.02704 * 1 2 3
25 25 H 1.08994 * 109.47163 * 60.02767 * 1 2 3
26 26 H 1.08997 * 109.46727 * 180.02562 * 1 2 3
27 27 H 1.08994 * 109.50227 * 300.74039 * 4 2 1
28 28 H 1.08998 * 109.50241 * 60.82093 * 4 2 1
29 29 H 0.96699 * 113.99493 * 299.99869 * 7 5 4
30 30 H 1.09003 * 109.46318 * 54.81092 * 10 8 5
31 31 H 1.08998 * 109.46956 * 174.80974 * 10 8 5
32 32 H 0.97001 * 119.99802 * 180.02562 * 14 13 11
33 33 H 1.09002 * 109.46761 * 299.98025 * 21 19 8
34 34 H 1.09003 * 109.46665 * 59.97973 * 21 19 8
35 35 H 1.08991 * 109.47182 * 179.97438 * 21 19 8
36 36 H 1.09005 * 109.46873 * 60.00145 * 23 22 19
37 37 H 1.09004 * 109.47265 * 179.97438 * 23 22 19
38 38 H 1.08998 * 109.47576 * 299.99893 * 23 22 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8931 1.0278 0.0000
4 6 2.0399 -0.7209 -1.2499
5 6 3.5710 -0.7360 -1.2356
6 1 3.9380 -1.2853 -2.1026
7 8 4.0622 0.6053 -1.2770
8 6 4.0546 -1.4186 0.0466
9 1 3.7123 -2.4535 0.0594
10 6 5.5834 -1.3848 0.0975
11 6 6.1420 -2.2174 -1.0276
12 1 5.4735 -2.7207 -1.7103
13 6 7.5065 -2.3375 -1.1845
14 7 8.3206 -1.7250 -0.3528
15 14 8.1990 -3.3702 -2.5787
16 1 7.0821 -3.9503 -3.3669
17 1 9.0354 -2.5158 -3.4594
18 1 9.0298 -4.4657 -2.0178
19 6 3.4865 -0.6776 1.2591
20 1 3.8404 0.3534 1.2532
21 6 3.9511 -1.3687 2.5427
22 7 2.0193 -0.6917 1.1994
23 6 1.4374 -0.1105 2.4166
24 1 -0.3633 0.5143 0.8898
25 1 -0.3633 0.5134 -0.8902
26 1 -0.3633 -1.0277 0.0005
27 1 1.6660 -1.7447 -1.2576
28 1 1.6889 -0.1986 -2.1399
29 1 3.7895 1.0999 -2.0620
30 1 5.9277 -0.3558 -0.0065
31 1 5.9242 -1.7873 1.0514
32 1 9.2806 -1.8092 -0.4636
33 1 3.5973 -2.3997 2.5486
34 1 5.0402 -1.3580 2.5873
35 1 3.5470 -0.8408 3.4063
36 1 1.7729 0.9211 2.5229
37 1 0.3498 -0.1330 2.3459
38 1 1.7574 -0.6879 3.2839
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000260724772.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:08:57
Heat of formation + Delta-G solvation = -59.045404 kcal
Electronic energy + Delta-G solvation = -17159.879277 eV
Core-core repulsion = 14615.749670 eV
Total energy + Delta-G solvation = -2544.129608 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 227.163 amu
Computer time = 0.33 seconds
Orbital eigenvalues (eV)
-39.51187 -35.89407 -34.18872 -32.56969 -31.59647 -28.31484 -28.08653 -25.77517
-24.93101 -22.33613 -20.85886 -19.96021 -18.88333 -16.58586 -16.03851 -15.38608
-14.95044 -14.52595 -14.26018 -14.11648 -13.29312 -13.04332 -12.53745 -12.41917
-12.05815 -12.03623 -11.65992 -11.47765 -11.20414 -11.04590 -11.00144 -10.89510
-10.77989 -10.45410 -10.35397 -9.88334 -9.59144 -9.31564 -8.89443 -8.75957
-8.24518 -7.84722 -5.91502 -3.91836 3.34539 3.42016 3.45239 4.23903
4.52377 4.94924 5.12542 5.22737 5.34762 5.44444 5.51499 5.60205
5.65235 5.78133 5.79763 5.85847 5.95076 5.97014 6.08723 6.12466
6.25702 6.33468 6.40902 6.48299 6.53982 6.69448 6.89469 6.93025
7.15668 7.53583 7.61578 7.79557 7.98867 8.14368 8.36225 8.52250
9.14696 9.70194 11.20118
Molecular weight = 227.16amu
Principal moments of inertia in cm(-1)
A = 0.037846 B = 0.007899 C = 0.007088
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 739.671212 B = 3543.930744 C = 3949.157795
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.147 4.147
2 C 0.087 3.913
3 H 0.042 0.958
4 C -0.146 4.146
5 C 0.114 3.886
6 H 0.062 0.938
7 O -0.554 6.554
8 C -0.061 4.061
9 H 0.072 0.928
10 C 0.029 3.971
11 C -0.510 4.510
12 H 0.052 0.948
13 C 0.057 3.943
14 N -0.895 5.895
15 Si 0.887 3.113
16 H -0.274 1.274
17 H -0.285 1.285
18 H -0.285 1.285
19 C 0.090 3.910
20 H 0.043 0.957
21 C -0.146 4.146
22 N -0.536 5.536
23 C 0.019 3.981
24 H 0.053 0.947
25 H 0.054 0.946
26 H 0.061 0.939
27 H 0.074 0.926
28 H 0.059 0.941
29 H 0.360 0.640
30 H 0.027 0.973
31 H 0.019 0.981
32 H 0.258 0.742
33 H 0.057 0.943
34 H 0.072 0.928
35 H 0.043 0.957
36 H 0.018 0.982
37 H 0.064 0.936
38 H 0.069 0.931
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -13.783 3.560 1.338 14.298
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.204 4.204
2 C -0.021 4.021
3 H 0.060 0.940
4 C -0.184 4.184
5 C 0.056 3.944
6 H 0.080 0.920
7 O -0.357 6.357
8 C -0.080 4.080
9 H 0.090 0.910
10 C -0.008 4.008
11 C -0.549 4.549
12 H 0.071 0.929
13 C -0.144 4.144
14 N -0.535 5.535
15 Si 0.715 3.285
16 H -0.199 1.199
17 H -0.212 1.212
18 H -0.211 1.211
19 C -0.018 4.018
20 H 0.061 0.939
21 C -0.204 4.204
22 N -0.261 5.261
23 C -0.129 4.129
24 H 0.072 0.928
25 H 0.073 0.927
26 H 0.080 0.920
27 H 0.093 0.907
28 H 0.077 0.923
29 H 0.204 0.796
30 H 0.045 0.955
31 H 0.038 0.962
32 H 0.068 0.932
33 H 0.076 0.924
34 H 0.090 0.910
35 H 0.062 0.938
36 H 0.036 0.964
37 H 0.083 0.917
38 H 0.087 0.913
Dipole moment (debyes) X Y Z Total
from point charges -13.484 2.910 1.928 13.928
hybrid contribution 0.449 0.435 -1.294 1.437
sum -13.035 3.345 0.634 13.472
Atomic orbital electron populations
1.21944 0.95287 1.02146 1.01060 1.21443 0.94053 0.95896 0.90747
0.94044 1.22422 0.98257 1.01441 0.96277 1.21859 0.89525 0.83191
0.99858 0.91999 1.86622 1.77130 1.25543 1.46444 1.21293 0.99691
0.97104 0.89914 0.90999 1.19143 0.86918 0.97857 0.96897 1.21246
0.91320 1.29375 1.12923 0.92944 1.24978 0.97303 0.95941 0.96172
1.69976 1.02855 1.43571 1.37094 0.86625 0.79080 0.80234 0.82569
1.19879 1.21171 1.21126 1.21647 0.84918 0.98734 0.96456 0.93891
1.21969 1.02195 1.00530 0.95680 1.62043 1.08445 1.54296 1.01348
1.22458 0.99655 0.97141 0.93663 0.92774 0.92729 0.92035 0.90728
0.92273 0.79598 0.95506 0.96237 0.93240 0.92356 0.90965 0.93769
0.96353 0.91730 0.91252
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.73 8.77 37.16 0.33 -1.41 16
2 C 0.09 1.29 2.31 -67.72 -0.16 1.14 16
3 H 0.04 0.67 7.76 -51.92 -0.40 0.26 16
4 C -0.15 -2.23 5.07 -26.65 -0.14 -2.36 16
5 C 0.11 2.18 3.03 -26.62 -0.08 2.10 16
6 H 0.06 1.27 7.05 -51.93 -0.37 0.90 16
7 O -0.55 -10.67 11.32 -35.23 -0.40 -11.07 16
8 C -0.06 -1.30 1.65 -90.55 -0.15 -1.45 16
9 H 0.07 1.57 8.14 -51.92 -0.42 1.15 16
10 C 0.03 0.76 4.16 -27.88 -0.12 0.65 16
11 C -0.51 -14.43 8.44 -34.44 -0.29 -14.72 16
12 H 0.05 1.44 7.07 -52.49 -0.37 1.07 16
13 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16
14 N -0.90 -27.30 13.29 55.43 0.74 -26.57 16
15 Si 0.89 21.89 29.54 -169.99 -5.02 16.87 16
16 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16
17 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16
18 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16
19 C 0.09 1.69 1.83 -67.72 -0.12 1.57 16
20 H 0.04 0.90 7.76 -51.93 -0.40 0.50 16
21 C -0.15 -2.58 8.44 37.16 0.31 -2.27 16
22 N -0.54 -8.65 4.58 -226.93 -1.04 -9.69 16
23 C 0.02 0.26 8.64 60.06 0.52 0.78 16
24 H 0.05 0.59 6.23 -51.93 -0.32 0.27 16
25 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16
26 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16
27 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16
28 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16
29 H 0.36 5.18 9.08 45.56 0.41 5.59 16
30 H 0.03 0.78 7.47 -51.93 -0.39 0.39 16
31 H 0.02 0.54 6.20 -51.93 -0.32 0.21 16
32 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16
33 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16
34 H 0.07 1.40 6.34 -51.93 -0.33 1.07 16
35 H 0.04 0.67 6.32 -51.93 -0.33 0.34 16
36 H 0.02 0.25 8.14 -51.93 -0.42 -0.17 16
37 H 0.06 0.76 5.96 -51.93 -0.31 0.45 16
38 H 0.07 0.90 6.21 -51.93 -0.32 0.58 16
LS Contribution 286.62 15.07 4.32 4.32
Total: -1.00 -31.19 286.62 -6.94 -38.13
By element:
Atomic # 1 Polarization: 7.97 SS G_CDS: -5.55 Total: 2.43 kcal
Atomic # 6 Polarization: -14.44 SS G_CDS: 0.01 Total: -14.43 kcal
Atomic # 7 Polarization: -35.95 SS G_CDS: -0.30 Total: -36.25 kcal
Atomic # 8 Polarization: -10.67 SS G_CDS: -0.40 Total: -11.07 kcal
Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal
Total LS contribution 4.32 Total: 4.32 kcal
Total: -31.19 -6.94 -38.13 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000260724772.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -20.915 kcal
(2) G-P(sol) polarization free energy of solvation -31.189 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.104 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.942 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.130 kcal
(6) G-S(sol) free energy of system = (1) + (5) -59.045 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.33 seconds