Wall clock time and date at job start Mon Mar 30 2020 03:08:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09008 * 109.45849 * 2 1 4 4 C 1.53039 * 109.46366 * 240.02649 * 2 1 3 5 5 C 1.53126 * 109.28009 * 180.80213 * 4 2 1 6 6 H 1.09000 * 109.52323 * 177.62249 * 5 4 2 7 7 O 1.42900 * 109.52252 * 297.75244 * 5 4 2 8 8 C 1.53099 * 109.15071 * 57.65227 * 5 4 2 9 9 H 1.09009 * 109.50682 * 62.29317 * 8 5 4 10 10 C 1.53008 * 109.48809 * 182.39661 * 8 5 4 11 11 C 1.50700 * 109.47087 * 294.81704 * 10 8 5 12 12 H 1.07997 * 120.00032 * 359.97438 * 11 10 8 13 13 C 1.37875 * 119.99511 * 180.02562 * 11 10 8 14 14 N 1.31509 * 120.00337 * 359.97438 * 13 11 10 15 15 Si 1.86807 * 119.99560 * 179.97438 * 13 11 10 16 16 H 1.48495 * 109.47142 * 359.97438 * 15 13 11 17 17 H 1.48495 * 109.47012 * 119.99691 * 15 13 11 18 18 H 1.48501 * 109.46945 * 239.99523 * 15 13 11 19 19 C 1.53034 * 109.29509 * 302.33888 * 8 5 4 20 20 H 1.09002 * 109.46271 * 299.17460 * 19 8 5 21 21 C 1.53005 * 109.46475 * 179.19463 * 19 8 5 22 22 N 1.46847 * 109.51345 * 59.18740 * 19 8 5 23 23 C 1.46898 * 110.99897 * 174.16738 * 22 19 8 24 24 H 1.09005 * 109.46897 * 300.02704 * 1 2 3 25 25 H 1.08994 * 109.47163 * 60.02767 * 1 2 3 26 26 H 1.08997 * 109.46727 * 180.02562 * 1 2 3 27 27 H 1.08994 * 109.50227 * 300.74039 * 4 2 1 28 28 H 1.08998 * 109.50241 * 60.82093 * 4 2 1 29 29 H 0.96699 * 113.99493 * 299.99869 * 7 5 4 30 30 H 1.09003 * 109.46318 * 54.81092 * 10 8 5 31 31 H 1.08998 * 109.46956 * 174.80974 * 10 8 5 32 32 H 0.97001 * 119.99802 * 180.02562 * 14 13 11 33 33 H 1.09002 * 109.46761 * 299.98025 * 21 19 8 34 34 H 1.09003 * 109.46665 * 59.97973 * 21 19 8 35 35 H 1.08991 * 109.47182 * 179.97438 * 21 19 8 36 36 H 1.09005 * 109.46873 * 60.00145 * 23 22 19 37 37 H 1.09004 * 109.47265 * 179.97438 * 23 22 19 38 38 H 1.08998 * 109.47576 * 299.99893 * 23 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0399 -0.7209 -1.2499 5 6 3.5710 -0.7360 -1.2356 6 1 3.9380 -1.2853 -2.1026 7 8 4.0622 0.6053 -1.2770 8 6 4.0546 -1.4186 0.0466 9 1 3.7123 -2.4535 0.0594 10 6 5.5834 -1.3848 0.0975 11 6 6.1420 -2.2174 -1.0276 12 1 5.4735 -2.7207 -1.7103 13 6 7.5065 -2.3375 -1.1845 14 7 8.3206 -1.7250 -0.3528 15 14 8.1990 -3.3702 -2.5787 16 1 7.0821 -3.9503 -3.3669 17 1 9.0354 -2.5158 -3.4594 18 1 9.0298 -4.4657 -2.0178 19 6 3.4865 -0.6776 1.2591 20 1 3.8404 0.3534 1.2532 21 6 3.9511 -1.3687 2.5427 22 7 2.0193 -0.6917 1.1994 23 6 1.4374 -0.1105 2.4166 24 1 -0.3633 0.5143 0.8898 25 1 -0.3633 0.5134 -0.8902 26 1 -0.3633 -1.0277 0.0005 27 1 1.6660 -1.7447 -1.2576 28 1 1.6889 -0.1986 -2.1399 29 1 3.7895 1.0999 -2.0620 30 1 5.9277 -0.3558 -0.0065 31 1 5.9242 -1.7873 1.0514 32 1 9.2806 -1.8092 -0.4636 33 1 3.5973 -2.3997 2.5486 34 1 5.0402 -1.3580 2.5873 35 1 3.5470 -0.8408 3.4063 36 1 1.7729 0.9211 2.5229 37 1 0.3498 -0.1330 2.3459 38 1 1.7574 -0.6879 3.2839 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260724772.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:57 Heat of formation + Delta-G solvation = -59.045404 kcal Electronic energy + Delta-G solvation = -17159.879277 eV Core-core repulsion = 14615.749670 eV Total energy + Delta-G solvation = -2544.129608 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.51187 -35.89407 -34.18872 -32.56969 -31.59647 -28.31484 -28.08653 -25.77517 -24.93101 -22.33613 -20.85886 -19.96021 -18.88333 -16.58586 -16.03851 -15.38608 -14.95044 -14.52595 -14.26018 -14.11648 -13.29312 -13.04332 -12.53745 -12.41917 -12.05815 -12.03623 -11.65992 -11.47765 -11.20414 -11.04590 -11.00144 -10.89510 -10.77989 -10.45410 -10.35397 -9.88334 -9.59144 -9.31564 -8.89443 -8.75957 -8.24518 -7.84722 -5.91502 -3.91836 3.34539 3.42016 3.45239 4.23903 4.52377 4.94924 5.12542 5.22737 5.34762 5.44444 5.51499 5.60205 5.65235 5.78133 5.79763 5.85847 5.95076 5.97014 6.08723 6.12466 6.25702 6.33468 6.40902 6.48299 6.53982 6.69448 6.89469 6.93025 7.15668 7.53583 7.61578 7.79557 7.98867 8.14368 8.36225 8.52250 9.14696 9.70194 11.20118 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.037846 B = 0.007899 C = 0.007088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 739.671212 B = 3543.930744 C = 3949.157795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.087 3.913 3 H 0.042 0.958 4 C -0.146 4.146 5 C 0.114 3.886 6 H 0.062 0.938 7 O -0.554 6.554 8 C -0.061 4.061 9 H 0.072 0.928 10 C 0.029 3.971 11 C -0.510 4.510 12 H 0.052 0.948 13 C 0.057 3.943 14 N -0.895 5.895 15 Si 0.887 3.113 16 H -0.274 1.274 17 H -0.285 1.285 18 H -0.285 1.285 19 C 0.090 3.910 20 H 0.043 0.957 21 C -0.146 4.146 22 N -0.536 5.536 23 C 0.019 3.981 24 H 0.053 0.947 25 H 0.054 0.946 26 H 0.061 0.939 27 H 0.074 0.926 28 H 0.059 0.941 29 H 0.360 0.640 30 H 0.027 0.973 31 H 0.019 0.981 32 H 0.258 0.742 33 H 0.057 0.943 34 H 0.072 0.928 35 H 0.043 0.957 36 H 0.018 0.982 37 H 0.064 0.936 38 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.783 3.560 1.338 14.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.021 4.021 3 H 0.060 0.940 4 C -0.184 4.184 5 C 0.056 3.944 6 H 0.080 0.920 7 O -0.357 6.357 8 C -0.080 4.080 9 H 0.090 0.910 10 C -0.008 4.008 11 C -0.549 4.549 12 H 0.071 0.929 13 C -0.144 4.144 14 N -0.535 5.535 15 Si 0.715 3.285 16 H -0.199 1.199 17 H -0.212 1.212 18 H -0.211 1.211 19 C -0.018 4.018 20 H 0.061 0.939 21 C -0.204 4.204 22 N -0.261 5.261 23 C -0.129 4.129 24 H 0.072 0.928 25 H 0.073 0.927 26 H 0.080 0.920 27 H 0.093 0.907 28 H 0.077 0.923 29 H 0.204 0.796 30 H 0.045 0.955 31 H 0.038 0.962 32 H 0.068 0.932 33 H 0.076 0.924 34 H 0.090 0.910 35 H 0.062 0.938 36 H 0.036 0.964 37 H 0.083 0.917 38 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -13.484 2.910 1.928 13.928 hybrid contribution 0.449 0.435 -1.294 1.437 sum -13.035 3.345 0.634 13.472 Atomic orbital electron populations 1.21944 0.95287 1.02146 1.01060 1.21443 0.94053 0.95896 0.90747 0.94044 1.22422 0.98257 1.01441 0.96277 1.21859 0.89525 0.83191 0.99858 0.91999 1.86622 1.77130 1.25543 1.46444 1.21293 0.99691 0.97104 0.89914 0.90999 1.19143 0.86918 0.97857 0.96897 1.21246 0.91320 1.29375 1.12923 0.92944 1.24978 0.97303 0.95941 0.96172 1.69976 1.02855 1.43571 1.37094 0.86625 0.79080 0.80234 0.82569 1.19879 1.21171 1.21126 1.21647 0.84918 0.98734 0.96456 0.93891 1.21969 1.02195 1.00530 0.95680 1.62043 1.08445 1.54296 1.01348 1.22458 0.99655 0.97141 0.93663 0.92774 0.92729 0.92035 0.90728 0.92273 0.79598 0.95506 0.96237 0.93240 0.92356 0.90965 0.93769 0.96353 0.91730 0.91252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.73 8.77 37.16 0.33 -1.41 16 2 C 0.09 1.29 2.31 -67.72 -0.16 1.14 16 3 H 0.04 0.67 7.76 -51.92 -0.40 0.26 16 4 C -0.15 -2.23 5.07 -26.65 -0.14 -2.36 16 5 C 0.11 2.18 3.03 -26.62 -0.08 2.10 16 6 H 0.06 1.27 7.05 -51.93 -0.37 0.90 16 7 O -0.55 -10.67 11.32 -35.23 -0.40 -11.07 16 8 C -0.06 -1.30 1.65 -90.55 -0.15 -1.45 16 9 H 0.07 1.57 8.14 -51.92 -0.42 1.15 16 10 C 0.03 0.76 4.16 -27.88 -0.12 0.65 16 11 C -0.51 -14.43 8.44 -34.44 -0.29 -14.72 16 12 H 0.05 1.44 7.07 -52.49 -0.37 1.07 16 13 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 14 N -0.90 -27.30 13.29 55.43 0.74 -26.57 16 15 Si 0.89 21.89 29.54 -169.99 -5.02 16.87 16 16 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 17 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 18 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 19 C 0.09 1.69 1.83 -67.72 -0.12 1.57 16 20 H 0.04 0.90 7.76 -51.93 -0.40 0.50 16 21 C -0.15 -2.58 8.44 37.16 0.31 -2.27 16 22 N -0.54 -8.65 4.58 -226.93 -1.04 -9.69 16 23 C 0.02 0.26 8.64 60.06 0.52 0.78 16 24 H 0.05 0.59 6.23 -51.93 -0.32 0.27 16 25 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 26 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 28 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.36 5.18 9.08 45.56 0.41 5.59 16 30 H 0.03 0.78 7.47 -51.93 -0.39 0.39 16 31 H 0.02 0.54 6.20 -51.93 -0.32 0.21 16 32 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 33 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 34 H 0.07 1.40 6.34 -51.93 -0.33 1.07 16 35 H 0.04 0.67 6.32 -51.93 -0.33 0.34 16 36 H 0.02 0.25 8.14 -51.93 -0.42 -0.17 16 37 H 0.06 0.76 5.96 -51.93 -0.31 0.45 16 38 H 0.07 0.90 6.21 -51.93 -0.32 0.58 16 LS Contribution 286.62 15.07 4.32 4.32 Total: -1.00 -31.19 286.62 -6.94 -38.13 By element: Atomic # 1 Polarization: 7.97 SS G_CDS: -5.55 Total: 2.43 kcal Atomic # 6 Polarization: -14.44 SS G_CDS: 0.01 Total: -14.43 kcal Atomic # 7 Polarization: -35.95 SS G_CDS: -0.30 Total: -36.25 kcal Atomic # 8 Polarization: -10.67 SS G_CDS: -0.40 Total: -11.07 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -31.19 -6.94 -38.13 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260724772.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.915 kcal (2) G-P(sol) polarization free energy of solvation -31.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds