Wall clock time and date at job start Mon Mar 30 2020 03:08:57
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52996 * 1
3 3 H 1.09008 * 109.45849 * 2 1
4 4 C 1.53039 * 109.46366 * 240.02649 * 2 1 3
5 5 C 1.53126 * 109.28009 * 180.80213 * 4 2 1
6 6 H 1.09000 * 109.52323 * 177.62249 * 5 4 2
7 7 O 1.42900 * 109.52252 * 297.75244 * 5 4 2
8 8 C 1.53099 * 109.15071 * 57.65227 * 5 4 2
9 9 H 1.09009 * 109.50682 * 62.29317 * 8 5 4
10 10 C 1.53008 * 109.48809 * 182.39661 * 8 5 4
11 11 C 1.50700 * 109.47087 * 294.81704 * 10 8 5
12 12 H 1.07997 * 120.00032 * 359.97438 * 11 10 8
13 13 C 1.37875 * 119.99511 * 180.02562 * 11 10 8
14 14 N 1.31509 * 120.00337 * 359.97438 * 13 11 10
15 15 Si 1.86807 * 119.99560 * 179.97438 * 13 11 10
16 16 H 1.48495 * 109.47142 * 359.97438 * 15 13 11
17 17 H 1.48495 * 109.47012 * 119.99691 * 15 13 11
18 18 H 1.48501 * 109.46945 * 239.99523 * 15 13 11
19 19 C 1.53034 * 109.29509 * 302.33888 * 8 5 4
20 20 H 1.09002 * 109.46271 * 299.17460 * 19 8 5
21 21 C 1.53005 * 109.46475 * 179.19463 * 19 8 5
22 22 N 1.46847 * 109.51345 * 59.18740 * 19 8 5
23 23 C 1.46898 * 110.99897 * 174.16738 * 22 19 8
24 24 H 1.09005 * 109.46897 * 300.02704 * 1 2 3
25 25 H 1.08994 * 109.47163 * 60.02767 * 1 2 3
26 26 H 1.08997 * 109.46727 * 180.02562 * 1 2 3
27 27 H 1.08994 * 109.50227 * 300.74039 * 4 2 1
28 28 H 1.08998 * 109.50241 * 60.82093 * 4 2 1
29 29 H 0.96699 * 113.99493 * 299.99869 * 7 5 4
30 30 H 1.09003 * 109.46318 * 54.81092 * 10 8 5
31 31 H 1.08998 * 109.46956 * 174.80974 * 10 8 5
32 32 H 0.97001 * 119.99802 * 180.02562 * 14 13 11
33 33 H 1.09002 * 109.46761 * 299.98025 * 21 19 8
34 34 H 1.09003 * 109.46665 * 59.97973 * 21 19 8
35 35 H 1.08991 * 109.47182 * 179.97438 * 21 19 8
36 36 H 1.09005 * 109.46873 * 60.00145 * 23 22 19
37 37 H 1.09004 * 109.47265 * 179.97438 * 23 22 19
38 38 H 1.08998 * 109.47576 * 299.99893 * 23 22 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8931 1.0278 0.0000
4 6 2.0399 -0.7209 -1.2499
5 6 3.5710 -0.7360 -1.2356
6 1 3.9380 -1.2853 -2.1026
7 8 4.0622 0.6053 -1.2770
8 6 4.0546 -1.4186 0.0466
9 1 3.7123 -2.4535 0.0594
10 6 5.5834 -1.3848 0.0975
11 6 6.1420 -2.2174 -1.0276
12 1 5.4735 -2.7207 -1.7103
13 6 7.5065 -2.3375 -1.1845
14 7 8.3206 -1.7250 -0.3528
15 14 8.1990 -3.3702 -2.5787
16 1 7.0821 -3.9503 -3.3669
17 1 9.0354 -2.5158 -3.4594
18 1 9.0298 -4.4657 -2.0178
19 6 3.4865 -0.6776 1.2591
20 1 3.8404 0.3534 1.2532
21 6 3.9511 -1.3687 2.5427
22 7 2.0193 -0.6917 1.1994
23 6 1.4374 -0.1105 2.4166
24 1 -0.3633 0.5143 0.8898
25 1 -0.3633 0.5134 -0.8902
26 1 -0.3633 -1.0277 0.0005
27 1 1.6660 -1.7447 -1.2576
28 1 1.6889 -0.1986 -2.1399
29 1 3.7895 1.0999 -2.0620
30 1 5.9277 -0.3558 -0.0065
31 1 5.9242 -1.7873 1.0514
32 1 9.2806 -1.8092 -0.4636
33 1 3.5973 -2.3997 2.5486
34 1 5.0402 -1.3580 2.5873
35 1 3.5470 -0.8408 3.4063
36 1 1.7729 0.9211 2.5229
37 1 0.3498 -0.1330 2.3459
38 1 1.7574 -0.6879 3.2839
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000260724772.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:08:57
Heat of formation + Delta-G solvation = -82.140298 kcal
Electronic energy + Delta-G solvation = -17160.880747 eV
Core-core repulsion = 14615.749670 eV
Total energy + Delta-G solvation = -2545.131077 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 227.163 amu
Computer time = 0.41 seconds
Orbital eigenvalues (eV)
-40.92358 -37.33099 -35.91676 -34.34815 -33.18628 -30.06828 -29.34368 -27.07142
-26.66368 -24.11759 -22.30261 -21.32722 -20.48441 -18.55706 -17.61954 -16.76168
-16.67363 -16.02793 -15.96269 -15.43893 -14.63752 -14.40036 -14.28062 -13.93096
-13.71688 -13.42326 -13.13625 -12.89957 -12.70878 -12.60475 -12.45800 -12.31931
-12.30774 -12.14621 -11.79490 -11.58037 -11.42265 -11.15336 -10.72106 -10.46432
-10.37735 -9.15995 -8.14985 -6.23700 1.39161 1.39483 1.52257 2.42340
2.99048 3.18369 3.58464 3.89486 3.96320 4.04956 4.08945 4.38941
4.44549 4.53672 4.56978 4.67620 4.71024 4.80183 4.85402 4.94032
4.94518 5.02815 5.06908 5.14300 5.22833 5.26420 5.32283 5.34274
5.47397 5.59203 5.81715 5.96160 6.20275 6.31666 6.35679 6.91424
7.08134 7.43409 8.97586
Molecular weight = 227.16amu
Principal moments of inertia in cm(-1)
A = 0.037846 B = 0.007899 C = 0.007088
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 739.671212 B = 3543.930744 C = 3949.157795
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.138 4.138
2 C 0.083 3.917
3 H 0.029 0.971
4 C -0.135 4.135
5 C 0.114 3.886
6 H 0.042 0.958
7 O -0.576 6.576
8 C -0.059 4.059
9 H 0.065 0.935
10 C 0.041 3.959
11 C -0.525 4.525
12 H 0.058 0.942
13 C -0.002 4.002
14 N -0.936 5.936
15 Si 0.960 3.040
16 H -0.261 1.261
17 H -0.281 1.281
18 H -0.279 1.279
19 C 0.100 3.900
20 H 0.016 0.984
21 C -0.141 4.141
22 N -0.539 5.539
23 C 0.017 3.983
24 H 0.065 0.935
25 H 0.072 0.928
26 H 0.063 0.937
27 H 0.077 0.923
28 H 0.088 0.912
29 H 0.380 0.620
30 H -0.013 1.013
31 H -0.005 1.005
32 H 0.261 0.739
33 H 0.062 0.938
34 H 0.043 0.957
35 H 0.070 0.930
36 H 0.016 0.984
37 H 0.090 0.910
38 H 0.074 0.926
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -16.036 3.207 0.507 16.361
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.195 4.195
2 C -0.025 4.025
3 H 0.047 0.953
4 C -0.173 4.173
5 C 0.056 3.944
6 H 0.060 0.940
7 O -0.382 6.382
8 C -0.077 4.077
9 H 0.084 0.916
10 C 0.004 3.996
11 C -0.563 4.563
12 H 0.076 0.924
13 C -0.199 4.199
14 N -0.577 5.577
15 Si 0.785 3.215
16 H -0.185 1.185
17 H -0.207 1.207
18 H -0.205 1.205
19 C -0.009 4.009
20 H 0.034 0.966
21 C -0.198 4.198
22 N -0.264 5.264
23 C -0.130 4.130
24 H 0.084 0.916
25 H 0.091 0.909
26 H 0.082 0.918
27 H 0.095 0.905
28 H 0.107 0.893
29 H 0.228 0.772
30 H 0.006 0.994
31 H 0.013 0.987
32 H 0.069 0.931
33 H 0.081 0.919
34 H 0.062 0.938
35 H 0.089 0.911
36 H 0.034 0.966
37 H 0.108 0.892
38 H 0.093 0.907
Dipole moment (debyes) X Y Z Total
from point charges -15.768 2.564 1.088 16.012
hybrid contribution 1.159 0.598 -1.009 1.649
sum -14.609 3.162 0.079 14.947
Atomic orbital electron populations
1.21876 0.92230 1.02781 1.02631 1.21566 0.96344 0.94812 0.89796
0.95284 1.22325 0.94681 1.02226 0.98051 1.21740 0.92433 0.82728
0.97515 0.93962 1.86578 1.77873 1.25757 1.48003 1.21118 0.96184
0.97585 0.92858 0.91644 1.18915 0.90673 0.94820 0.95195 1.21628
0.91850 1.29415 1.13389 0.92408 1.25930 0.97778 0.97252 0.98959
1.70123 1.03240 1.45173 1.39150 0.85472 0.78493 0.78414 0.79109
1.18469 1.20671 1.20470 1.21369 0.87164 0.96721 0.95613 0.96568
1.21892 1.00423 1.01088 0.96421 1.62043 1.06098 1.55158 1.03096
1.22563 1.01038 0.96872 0.92545 0.91630 0.90864 0.91776 0.90464
0.89324 0.77230 0.99416 0.98716 0.93061 0.91939 0.93787 0.91079
0.96567 0.89154 0.90740
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.70 8.77 71.98 0.63 -2.07 16
2 C 0.08 2.27 2.31 44.94 0.10 2.37 16
3 H 0.03 0.88 7.76 -2.38 -0.02 0.86 16
4 C -0.13 -3.83 5.07 30.65 0.16 -3.68 16
5 C 0.11 4.37 3.03 30.67 0.09 4.47 16
6 H 0.04 1.75 7.05 -2.39 -0.02 1.73 16
7 O -0.58 -22.45 11.32 -148.98 -1.69 -24.13 16
8 C -0.06 -2.55 1.65 -10.75 -0.02 -2.57 16
9 H 0.07 2.91 8.14 -2.38 -0.02 2.89 16
10 C 0.04 2.28 4.16 29.85 0.12 2.40 16
11 C -0.52 -30.48 8.44 25.60 0.22 -30.27 16
12 H 0.06 3.22 7.07 -2.91 -0.02 3.20 16
13 C 0.00 -0.13 5.46 84.65 0.46 0.33 16
14 N -0.94 -58.86 13.29 21.45 0.28 -58.57 16
15 Si 0.96 45.35 29.54 68.60 2.03 47.38 16
16 H -0.26 -11.65 7.11 99.48 0.71 -10.94 16
17 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16
18 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16
19 C 0.10 3.80 1.83 44.94 0.08 3.88 16
20 H 0.02 0.70 7.76 -2.39 -0.02 0.69 16
21 C -0.14 -5.03 8.44 71.98 0.61 -4.43 16
22 N -0.54 -16.48 4.58 -871.88 -3.99 -20.48 16
23 C 0.02 0.43 8.64 127.69 1.10 1.53 16
24 H 0.06 1.15 6.23 -2.38 -0.01 1.13 16
25 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16
26 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16
27 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16
28 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16
29 H 0.38 10.76 9.08 -74.06 -0.67 10.09 16
30 H -0.01 -0.78 7.47 -2.39 -0.02 -0.80 16
31 H -0.01 -0.32 6.20 -2.39 -0.01 -0.33 16
32 H 0.26 15.38 8.31 -92.71 -0.77 14.61 16
33 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16
34 H 0.04 1.79 6.34 -2.39 -0.02 1.78 16
35 H 0.07 2.11 6.32 -2.39 -0.02 2.09 16
36 H 0.02 0.40 8.14 -2.38 -0.02 0.38 16
37 H 0.09 1.78 5.96 -2.38 -0.01 1.76 16
38 H 0.07 1.75 6.21 -2.39 -0.01 1.73 16
Total: -1.00 -69.25 286.62 0.55 -68.70
By element:
Atomic # 1 Polarization: 14.79 SS G_CDS: 0.36 Total: 15.15 kcal
Atomic # 6 Polarization: -31.60 SS G_CDS: 3.56 Total: -28.04 kcal
Atomic # 7 Polarization: -75.34 SS G_CDS: -3.71 Total: -79.05 kcal
Atomic # 8 Polarization: -22.45 SS G_CDS: -1.69 Total: -24.13 kcal
Atomic # 14 Polarization: 45.35 SS G_CDS: 2.03 Total: 47.38 kcal
Total: -69.25 0.55 -68.70 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000260724772.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -13.444 kcal
(2) G-P(sol) polarization free energy of solvation -69.247 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.691 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.551 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.696 kcal
(6) G-S(sol) free energy of system = (1) + (5) -82.140 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.41 seconds