Wall clock time and date at job start Mon Mar 30 2020 03:08:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09008 * 109.45849 * 2 1 4 4 C 1.53039 * 109.46366 * 240.02649 * 2 1 3 5 5 C 1.53126 * 109.28009 * 180.80213 * 4 2 1 6 6 H 1.09000 * 109.52323 * 177.62249 * 5 4 2 7 7 O 1.42900 * 109.52252 * 297.75244 * 5 4 2 8 8 C 1.53099 * 109.15071 * 57.65227 * 5 4 2 9 9 H 1.09009 * 109.50682 * 62.29317 * 8 5 4 10 10 C 1.53008 * 109.48809 * 182.39661 * 8 5 4 11 11 C 1.50700 * 109.47087 * 294.81704 * 10 8 5 12 12 H 1.07997 * 120.00032 * 359.97438 * 11 10 8 13 13 C 1.37875 * 119.99511 * 180.02562 * 11 10 8 14 14 N 1.31509 * 120.00337 * 359.97438 * 13 11 10 15 15 Si 1.86807 * 119.99560 * 179.97438 * 13 11 10 16 16 H 1.48495 * 109.47142 * 359.97438 * 15 13 11 17 17 H 1.48495 * 109.47012 * 119.99691 * 15 13 11 18 18 H 1.48501 * 109.46945 * 239.99523 * 15 13 11 19 19 C 1.53034 * 109.29509 * 302.33888 * 8 5 4 20 20 H 1.09002 * 109.46271 * 299.17460 * 19 8 5 21 21 C 1.53005 * 109.46475 * 179.19463 * 19 8 5 22 22 N 1.46847 * 109.51345 * 59.18740 * 19 8 5 23 23 C 1.46898 * 110.99897 * 174.16738 * 22 19 8 24 24 H 1.09005 * 109.46897 * 300.02704 * 1 2 3 25 25 H 1.08994 * 109.47163 * 60.02767 * 1 2 3 26 26 H 1.08997 * 109.46727 * 180.02562 * 1 2 3 27 27 H 1.08994 * 109.50227 * 300.74039 * 4 2 1 28 28 H 1.08998 * 109.50241 * 60.82093 * 4 2 1 29 29 H 0.96699 * 113.99493 * 299.99869 * 7 5 4 30 30 H 1.09003 * 109.46318 * 54.81092 * 10 8 5 31 31 H 1.08998 * 109.46956 * 174.80974 * 10 8 5 32 32 H 0.97001 * 119.99802 * 180.02562 * 14 13 11 33 33 H 1.09002 * 109.46761 * 299.98025 * 21 19 8 34 34 H 1.09003 * 109.46665 * 59.97973 * 21 19 8 35 35 H 1.08991 * 109.47182 * 179.97438 * 21 19 8 36 36 H 1.09005 * 109.46873 * 60.00145 * 23 22 19 37 37 H 1.09004 * 109.47265 * 179.97438 * 23 22 19 38 38 H 1.08998 * 109.47576 * 299.99893 * 23 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0399 -0.7209 -1.2499 5 6 3.5710 -0.7360 -1.2356 6 1 3.9380 -1.2853 -2.1026 7 8 4.0622 0.6053 -1.2770 8 6 4.0546 -1.4186 0.0466 9 1 3.7123 -2.4535 0.0594 10 6 5.5834 -1.3848 0.0975 11 6 6.1420 -2.2174 -1.0276 12 1 5.4735 -2.7207 -1.7103 13 6 7.5065 -2.3375 -1.1845 14 7 8.3206 -1.7250 -0.3528 15 14 8.1990 -3.3702 -2.5787 16 1 7.0821 -3.9503 -3.3669 17 1 9.0354 -2.5158 -3.4594 18 1 9.0298 -4.4657 -2.0178 19 6 3.4865 -0.6776 1.2591 20 1 3.8404 0.3534 1.2532 21 6 3.9511 -1.3687 2.5427 22 7 2.0193 -0.6917 1.1994 23 6 1.4374 -0.1105 2.4166 24 1 -0.3633 0.5143 0.8898 25 1 -0.3633 0.5134 -0.8902 26 1 -0.3633 -1.0277 0.0005 27 1 1.6660 -1.7447 -1.2576 28 1 1.6889 -0.1986 -2.1399 29 1 3.7895 1.0999 -2.0620 30 1 5.9277 -0.3558 -0.0065 31 1 5.9242 -1.7873 1.0514 32 1 9.2806 -1.8092 -0.4636 33 1 3.5973 -2.3997 2.5486 34 1 5.0402 -1.3580 2.5873 35 1 3.5470 -0.8408 3.4063 36 1 1.7729 0.9211 2.5229 37 1 0.3498 -0.1330 2.3459 38 1 1.7574 -0.6879 3.2839 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260724772.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:57 Heat of formation + Delta-G solvation = -82.140298 kcal Electronic energy + Delta-G solvation = -17160.880747 eV Core-core repulsion = 14615.749670 eV Total energy + Delta-G solvation = -2545.131077 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.92358 -37.33099 -35.91676 -34.34815 -33.18628 -30.06828 -29.34368 -27.07142 -26.66368 -24.11759 -22.30261 -21.32722 -20.48441 -18.55706 -17.61954 -16.76168 -16.67363 -16.02793 -15.96269 -15.43893 -14.63752 -14.40036 -14.28062 -13.93096 -13.71688 -13.42326 -13.13625 -12.89957 -12.70878 -12.60475 -12.45800 -12.31931 -12.30774 -12.14621 -11.79490 -11.58037 -11.42265 -11.15336 -10.72106 -10.46432 -10.37735 -9.15995 -8.14985 -6.23700 1.39161 1.39483 1.52257 2.42340 2.99048 3.18369 3.58464 3.89486 3.96320 4.04956 4.08945 4.38941 4.44549 4.53672 4.56978 4.67620 4.71024 4.80183 4.85402 4.94032 4.94518 5.02815 5.06908 5.14300 5.22833 5.26420 5.32283 5.34274 5.47397 5.59203 5.81715 5.96160 6.20275 6.31666 6.35679 6.91424 7.08134 7.43409 8.97586 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.037846 B = 0.007899 C = 0.007088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 739.671212 B = 3543.930744 C = 3949.157795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.083 3.917 3 H 0.029 0.971 4 C -0.135 4.135 5 C 0.114 3.886 6 H 0.042 0.958 7 O -0.576 6.576 8 C -0.059 4.059 9 H 0.065 0.935 10 C 0.041 3.959 11 C -0.525 4.525 12 H 0.058 0.942 13 C -0.002 4.002 14 N -0.936 5.936 15 Si 0.960 3.040 16 H -0.261 1.261 17 H -0.281 1.281 18 H -0.279 1.279 19 C 0.100 3.900 20 H 0.016 0.984 21 C -0.141 4.141 22 N -0.539 5.539 23 C 0.017 3.983 24 H 0.065 0.935 25 H 0.072 0.928 26 H 0.063 0.937 27 H 0.077 0.923 28 H 0.088 0.912 29 H 0.380 0.620 30 H -0.013 1.013 31 H -0.005 1.005 32 H 0.261 0.739 33 H 0.062 0.938 34 H 0.043 0.957 35 H 0.070 0.930 36 H 0.016 0.984 37 H 0.090 0.910 38 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.036 3.207 0.507 16.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.025 4.025 3 H 0.047 0.953 4 C -0.173 4.173 5 C 0.056 3.944 6 H 0.060 0.940 7 O -0.382 6.382 8 C -0.077 4.077 9 H 0.084 0.916 10 C 0.004 3.996 11 C -0.563 4.563 12 H 0.076 0.924 13 C -0.199 4.199 14 N -0.577 5.577 15 Si 0.785 3.215 16 H -0.185 1.185 17 H -0.207 1.207 18 H -0.205 1.205 19 C -0.009 4.009 20 H 0.034 0.966 21 C -0.198 4.198 22 N -0.264 5.264 23 C -0.130 4.130 24 H 0.084 0.916 25 H 0.091 0.909 26 H 0.082 0.918 27 H 0.095 0.905 28 H 0.107 0.893 29 H 0.228 0.772 30 H 0.006 0.994 31 H 0.013 0.987 32 H 0.069 0.931 33 H 0.081 0.919 34 H 0.062 0.938 35 H 0.089 0.911 36 H 0.034 0.966 37 H 0.108 0.892 38 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -15.768 2.564 1.088 16.012 hybrid contribution 1.159 0.598 -1.009 1.649 sum -14.609 3.162 0.079 14.947 Atomic orbital electron populations 1.21876 0.92230 1.02781 1.02631 1.21566 0.96344 0.94812 0.89796 0.95284 1.22325 0.94681 1.02226 0.98051 1.21740 0.92433 0.82728 0.97515 0.93962 1.86578 1.77873 1.25757 1.48003 1.21118 0.96184 0.97585 0.92858 0.91644 1.18915 0.90673 0.94820 0.95195 1.21628 0.91850 1.29415 1.13389 0.92408 1.25930 0.97778 0.97252 0.98959 1.70123 1.03240 1.45173 1.39150 0.85472 0.78493 0.78414 0.79109 1.18469 1.20671 1.20470 1.21369 0.87164 0.96721 0.95613 0.96568 1.21892 1.00423 1.01088 0.96421 1.62043 1.06098 1.55158 1.03096 1.22563 1.01038 0.96872 0.92545 0.91630 0.90864 0.91776 0.90464 0.89324 0.77230 0.99416 0.98716 0.93061 0.91939 0.93787 0.91079 0.96567 0.89154 0.90740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.70 8.77 71.98 0.63 -2.07 16 2 C 0.08 2.27 2.31 44.94 0.10 2.37 16 3 H 0.03 0.88 7.76 -2.38 -0.02 0.86 16 4 C -0.13 -3.83 5.07 30.65 0.16 -3.68 16 5 C 0.11 4.37 3.03 30.67 0.09 4.47 16 6 H 0.04 1.75 7.05 -2.39 -0.02 1.73 16 7 O -0.58 -22.45 11.32 -148.98 -1.69 -24.13 16 8 C -0.06 -2.55 1.65 -10.75 -0.02 -2.57 16 9 H 0.07 2.91 8.14 -2.38 -0.02 2.89 16 10 C 0.04 2.28 4.16 29.85 0.12 2.40 16 11 C -0.52 -30.48 8.44 25.60 0.22 -30.27 16 12 H 0.06 3.22 7.07 -2.91 -0.02 3.20 16 13 C 0.00 -0.13 5.46 84.65 0.46 0.33 16 14 N -0.94 -58.86 13.29 21.45 0.28 -58.57 16 15 Si 0.96 45.35 29.54 68.60 2.03 47.38 16 16 H -0.26 -11.65 7.11 99.48 0.71 -10.94 16 17 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 18 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 19 C 0.10 3.80 1.83 44.94 0.08 3.88 16 20 H 0.02 0.70 7.76 -2.39 -0.02 0.69 16 21 C -0.14 -5.03 8.44 71.98 0.61 -4.43 16 22 N -0.54 -16.48 4.58 -871.88 -3.99 -20.48 16 23 C 0.02 0.43 8.64 127.69 1.10 1.53 16 24 H 0.06 1.15 6.23 -2.38 -0.01 1.13 16 25 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 26 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 27 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 28 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 29 H 0.38 10.76 9.08 -74.06 -0.67 10.09 16 30 H -0.01 -0.78 7.47 -2.39 -0.02 -0.80 16 31 H -0.01 -0.32 6.20 -2.39 -0.01 -0.33 16 32 H 0.26 15.38 8.31 -92.71 -0.77 14.61 16 33 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 34 H 0.04 1.79 6.34 -2.39 -0.02 1.78 16 35 H 0.07 2.11 6.32 -2.39 -0.02 2.09 16 36 H 0.02 0.40 8.14 -2.38 -0.02 0.38 16 37 H 0.09 1.78 5.96 -2.38 -0.01 1.76 16 38 H 0.07 1.75 6.21 -2.39 -0.01 1.73 16 Total: -1.00 -69.25 286.62 0.55 -68.70 By element: Atomic # 1 Polarization: 14.79 SS G_CDS: 0.36 Total: 15.15 kcal Atomic # 6 Polarization: -31.60 SS G_CDS: 3.56 Total: -28.04 kcal Atomic # 7 Polarization: -75.34 SS G_CDS: -3.71 Total: -79.05 kcal Atomic # 8 Polarization: -22.45 SS G_CDS: -1.69 Total: -24.13 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 2.03 Total: 47.38 kcal Total: -69.25 0.55 -68.70 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260724772.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.444 kcal (2) G-P(sol) polarization free energy of solvation -69.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds