Wall clock time and date at job start Mon Mar 30 2020 03:23:05
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52995 * 1
3 3 H 1.09010 * 108.73687 * 2 1
4 4 C 1.54236 * 108.71261 * 241.81709 * 2 1 3
5 5 C 1.54060 * 112.32464 * 197.53198 * 4 2 1
6 6 N 1.44270 * 111.91717 * 318.78562 * 5 4 2
7 7 C 1.46910 * 110.99921 * 219.34481 * 6 5 4
8 8 C 1.47799 * 109.45680 * 96.47759 * 6 5 4
9 9 H 1.09006 * 108.79136 * 37.52238 * 8 6 5
10 10 C 1.53002 * 108.79158 * 155.85459 * 8 6 5
11 11 C 1.50695 * 109.47128 * 62.18230 * 10 8 6
12 12 H 1.07995 * 119.99968 * 354.93922 * 11 10 8
13 13 C 1.37880 * 120.00035 * 174.94084 * 11 10 8
14 14 N 1.31517 * 119.99825 * 179.97438 * 13 11 10
15 15 Si 1.86794 * 119.99997 * 0.02562 * 13 11 10
16 16 H 1.48495 * 109.47277 * 89.99766 * 15 13 11
17 17 H 1.48501 * 109.47039 * 209.99994 * 15 13 11
18 18 H 1.48499 * 109.47052 * 329.99676 * 15 13 11
19 19 C 1.45858 * 112.92140 * 276.74511 * 8 6 5
20 20 H 1.08995 * 109.05344 * 300.84735 * 19 8 6
21 21 O 1.42906 * 109.05162 * 181.87042 * 19 8 6
22 22 C 1.50459 * 108.77245 * 118.30438 * 2 1 3
23 23 H 1.08994 * 109.47043 * 301.69537 * 1 2 3
24 24 H 1.09005 * 109.47263 * 61.69373 * 1 2 3
25 25 H 1.09002 * 109.46906 * 181.69572 * 1 2 3
26 26 H 1.09000 * 108.96389 * 76.75384 * 4 2 1
27 27 H 1.09000 * 108.83326 * 318.22568 * 4 2 1
28 28 H 1.09001 * 108.97979 * 198.18501 * 5 4 2
29 29 H 1.09001 * 108.98224 * 79.38790 * 5 4 2
30 30 H 1.09000 * 109.46786 * 52.92948 * 7 6 5
31 31 H 1.09000 * 109.46789 * 172.92935 * 7 6 5
32 32 H 1.08992 * 109.46863 * 292.93213 * 7 6 5
33 33 H 1.09008 * 109.47114 * 182.17783 * 10 8 6
34 34 H 1.09003 * 109.47062 * 302.17682 * 10 8 6
35 35 H 0.97005 * 119.99769 * 180.02562 * 14 13 11
36 36 H 0.96701 * 113.99401 * 179.97438 * 21 19 8
37 37 H 1.09000 * 109.57479 * 93.14875 * 22 2 1
38 38 H 1.08995 * 109.67718 * 332.82540 * 22 2 1
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 1 1.8801 1.0323 0.0000
4 6 2.0248 -0.6899 -1.2876
5 6 3.4996 -1.1242 -1.1892
6 7 4.3133 -0.1242 -0.5417
7 6 5.6242 -0.0085 -1.1948
8 6 4.4626 -0.4621 0.8894
9 1 4.5535 -1.5439 0.9872
10 6 5.7421 0.1889 1.4187
11 6 5.6283 1.6871 1.3031
12 1 4.7693 2.1277 0.8190
13 6 6.6209 2.4955 1.8153
14 7 6.5218 3.8030 1.7139
15 14 8.1071 1.7335 2.6518
16 1 9.1704 1.4881 1.6447
17 1 8.6172 2.6597 3.6945
18 1 7.7152 0.4469 3.2814
19 6 3.3365 -0.0120 1.6998
20 1 3.2402 1.0696 1.6058
21 8 3.5855 -0.3408 3.0681
22 6 2.0141 -0.6755 1.2542
23 1 -0.3633 0.5399 0.8743
24 1 -0.3634 0.4873 -0.9048
25 1 -0.3633 -1.0272 0.0304
26 1 1.9147 0.0003 -2.1241
27 1 1.4090 -1.5697 -1.4744
28 1 3.8854 -1.2993 -2.1935
29 1 3.5588 -2.0521 -0.6203
30 1 5.4845 0.1509 -2.2640
31 1 6.1686 0.8347 -0.7697
32 1 6.1918 -0.9252 -1.0352
33 1 5.8836 -0.0851 2.4642
34 1 6.5945 -0.1570 0.8339
35 1 7.2204 4.3717 2.0740
36 1 2.8794 -0.0724 3.6718
37 1 2.1851 -1.7336 1.0564
38 1 1.2678 -0.5669 2.0411
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000260730039.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:23:05
Heat of formation + Delta-G solvation = -47.142521 kcal
Electronic energy + Delta-G solvation = -17370.444145 eV
Core-core repulsion = 14826.830685 eV
Total energy + Delta-G solvation = -2543.613460 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 227.163 amu
Computer time = 0.33 seconds
Orbital eigenvalues (eV)
-39.52570 -35.83762 -35.32297 -32.70233 -31.06474 -28.83361 -28.30142 -25.76642
-23.87858 -22.40585 -21.75901 -19.33647 -18.72016 -17.18687 -16.26411 -15.08170
-14.90678 -14.70277 -14.18586 -13.91350 -13.36533 -12.86986 -12.63989 -12.46199
-12.42164 -12.14030 -11.70896 -11.51644 -11.36453 -11.19842 -10.91352 -10.75194
-10.26599 -10.16695 -10.09731 -9.76756 -9.73715 -9.50761 -9.03675 -8.86701
-8.42141 -7.53016 -5.92422 -3.86624 3.36563 3.44923 3.51359 4.33050
4.55415 5.03997 5.10429 5.23886 5.34925 5.41651 5.49338 5.58978
5.75573 5.80207 5.93844 5.97835 6.00915 6.04171 6.10175 6.18213
6.23385 6.29127 6.39474 6.52996 6.61244 6.70195 6.82666 6.96837
7.03931 7.23760 7.38656 7.84989 7.90749 7.97705 8.36490 8.68907
9.18587 9.71009 11.20432
Molecular weight = 227.16amu
Principal moments of inertia in cm(-1)
A = 0.032170 B = 0.009275 C = 0.008593
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 870.161535 B = 3018.214985 C = 3257.675676
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.146 4.146
2 C -0.083 4.083
3 H 0.080 0.920
4 C -0.100 4.100
5 C 0.050 3.950
6 N -0.510 5.510
7 C 0.028 3.972
8 C 0.106 3.894
9 H 0.021 0.979
10 C -0.022 4.022
11 C -0.492 4.492
12 H 0.083 0.917
13 C 0.065 3.935
14 N -0.906 5.906
15 Si 0.870 3.130
16 H -0.281 1.281
17 H -0.290 1.290
18 H -0.266 1.266
19 C 0.124 3.876
20 H 0.078 0.922
21 O -0.563 6.563
22 C -0.143 4.143
23 H 0.051 0.949
24 H 0.050 0.950
25 H 0.047 0.953
26 H 0.059 0.941
27 H 0.051 0.949
28 H 0.056 0.944
29 H 0.031 0.969
30 H 0.050 0.950
31 H 0.106 0.894
32 H 0.011 0.989
33 H 0.033 0.967
34 H 0.011 0.989
35 H 0.260 0.740
36 H 0.367 0.633
37 H 0.056 0.944
38 H 0.059 0.941
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -8.855 -9.304 -3.601 13.340
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.204 4.204
2 C -0.102 4.102
3 H 0.099 0.901
4 C -0.138 4.138
5 C -0.079 4.079
6 N -0.235 5.235
7 C -0.120 4.120
8 C -0.001 4.001
9 H 0.038 0.962
10 C -0.059 4.059
11 C -0.530 4.530
12 H 0.100 0.900
13 C -0.135 4.135
14 N -0.546 5.546
15 Si 0.698 3.302
16 H -0.207 1.207
17 H -0.216 1.216
18 H -0.190 1.190
19 C 0.065 3.935
20 H 0.096 0.904
21 O -0.366 6.366
22 C -0.181 4.181
23 H 0.070 0.930
24 H 0.069 0.931
25 H 0.066 0.934
26 H 0.078 0.922
27 H 0.070 0.930
28 H 0.075 0.925
29 H 0.049 0.951
30 H 0.068 0.932
31 H 0.125 0.875
32 H 0.029 0.971
33 H 0.051 0.949
34 H 0.029 0.971
35 H 0.069 0.931
36 H 0.212 0.788
37 H 0.075 0.925
38 H 0.077 0.923
Dipole moment (debyes) X Y Z Total
from point charges -8.436 -8.921 -3.848 12.867
hybrid contribution 0.704 -0.917 0.701 1.352
sum -7.732 -9.838 -3.147 12.902
Atomic orbital electron populations
1.21965 0.96271 1.00898 1.01251 1.20693 0.94004 1.01478 0.93997
0.90129 1.21957 0.95029 0.99346 0.97484 1.21985 0.94297 0.93309
0.98357 1.61207 1.14921 1.45617 1.01736 1.22600 0.90090 1.01917
0.97372 1.20153 0.97125 0.95778 0.87080 0.96160 1.19970 0.91535
0.97684 0.96737 1.21022 1.07448 0.88347 1.36147 0.89953 1.24995
0.97988 0.94689 0.95870 1.69915 1.34297 1.03084 1.47259 0.86926
0.83681 0.79704 0.79865 1.20685 1.21649 1.19026 1.20655 0.92079
0.99808 0.80934 0.90406 1.86522 1.48102 1.84441 1.17576 1.22211
0.98259 1.00260 0.97400 0.93008 0.93107 0.93408 0.92234 0.92998
0.92502 0.95073 0.93164 0.87515 0.97070 0.94851 0.97102 0.93056
0.78795 0.92527 0.92256
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.75 8.79 37.15 0.33 -1.42 16
2 C -0.08 -1.22 2.32 -91.24 -0.21 -1.43 16
3 H 0.08 1.39 7.38 -51.92 -0.38 1.00 16
4 C -0.10 -1.39 5.51 -25.53 -0.14 -1.53 16
5 C 0.05 0.79 5.18 -4.68 -0.02 0.76 16
6 N -0.51 -9.78 4.10 -239.73 -0.98 -10.76 16
7 C 0.03 0.53 7.97 60.07 0.48 1.01 16
8 C 0.11 2.21 1.58 -70.60 -0.11 2.09 16
9 H 0.02 0.42 7.24 -51.93 -0.38 0.05 16
10 C -0.02 -0.53 3.07 -27.88 -0.09 -0.62 16
11 C -0.49 -13.55 6.82 -34.44 -0.23 -13.78 16
12 H 0.08 2.47 7.04 -52.49 -0.37 2.10 16
13 C 0.06 1.87 5.47 -17.82 -0.10 1.77 16
14 N -0.91 -27.76 13.96 55.43 0.77 -26.98 16
15 Si 0.87 22.07 27.57 -169.99 -4.69 17.39 16
16 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16
17 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16
18 H -0.27 -6.65 6.40 56.52 0.36 -6.29 16
19 C 0.12 2.40 2.41 -29.32 -0.07 2.32 16
20 H 0.08 1.72 6.02 -51.93 -0.31 1.41 16
21 O -0.56 -10.85 12.20 -35.23 -0.43 -11.28 16
22 C -0.14 -2.20 4.72 -27.21 -0.13 -2.33 16
23 H 0.05 0.60 8.07 -51.93 -0.42 0.18 16
24 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16
25 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16
26 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16
27 H 0.05 0.63 7.98 -51.93 -0.41 0.22 16
28 H 0.06 0.82 7.41 -51.93 -0.38 0.43 16
29 H 0.03 0.49 6.50 -51.93 -0.34 0.15 16
30 H 0.05 0.84 7.86 -51.93 -0.41 0.43 16
31 H 0.11 2.40 5.45 -51.93 -0.28 2.12 16
32 H 0.01 0.20 7.76 -51.93 -0.40 -0.21 16
33 H 0.03 0.87 6.08 -51.92 -0.32 0.55 16
34 H 0.01 0.26 5.88 -51.93 -0.31 -0.04 16
35 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16
36 H 0.37 5.30 9.00 45.56 0.41 5.71 16
37 H 0.06 0.87 7.15 -51.93 -0.37 0.50 16
38 H 0.06 0.81 7.62 -51.93 -0.40 0.41 16
LS Contribution 279.45 15.07 4.21 4.21
Total: -1.00 -30.64 279.45 -6.93 -37.56
By element:
Atomic # 1 Polarization: 8.53 SS G_CDS: -5.51 Total: 3.02 kcal
Atomic # 6 Polarization: -12.86 SS G_CDS: -0.30 Total: -13.16 kcal
Atomic # 7 Polarization: -37.54 SS G_CDS: -0.21 Total: -37.74 kcal
Atomic # 8 Polarization: -10.85 SS G_CDS: -0.43 Total: -11.28 kcal
Atomic # 14 Polarization: 22.07 SS G_CDS: -4.69 Total: 17.39 kcal
Total LS contribution 4.21 Total: 4.21 kcal
Total: -30.64 -6.93 -37.56 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000260730039.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -9.578 kcal
(2) G-P(sol) polarization free energy of solvation -30.639 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.217 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.926 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.564 kcal
(6) G-S(sol) free energy of system = (1) + (5) -47.143 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.33 seconds