Wall clock time and date at job start Mon Mar 30 2020 03:23:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09010 * 108.73687 * 2 1 4 4 C 1.54236 * 108.71261 * 241.81709 * 2 1 3 5 5 C 1.54060 * 112.32464 * 197.53198 * 4 2 1 6 6 N 1.44270 * 111.91717 * 318.78562 * 5 4 2 7 7 C 1.46910 * 110.99921 * 219.34481 * 6 5 4 8 8 C 1.47799 * 109.45680 * 96.47759 * 6 5 4 9 9 H 1.09006 * 108.79136 * 37.52238 * 8 6 5 10 10 C 1.53002 * 108.79158 * 155.85459 * 8 6 5 11 11 C 1.50695 * 109.47128 * 62.18230 * 10 8 6 12 12 H 1.07995 * 119.99968 * 354.93922 * 11 10 8 13 13 C 1.37880 * 120.00035 * 174.94084 * 11 10 8 14 14 N 1.31517 * 119.99825 * 179.97438 * 13 11 10 15 15 Si 1.86794 * 119.99997 * 0.02562 * 13 11 10 16 16 H 1.48495 * 109.47277 * 89.99766 * 15 13 11 17 17 H 1.48501 * 109.47039 * 209.99994 * 15 13 11 18 18 H 1.48499 * 109.47052 * 329.99676 * 15 13 11 19 19 C 1.45858 * 112.92140 * 276.74511 * 8 6 5 20 20 H 1.08995 * 109.05344 * 300.84735 * 19 8 6 21 21 O 1.42906 * 109.05162 * 181.87042 * 19 8 6 22 22 C 1.50459 * 108.77245 * 118.30438 * 2 1 3 23 23 H 1.08994 * 109.47043 * 301.69537 * 1 2 3 24 24 H 1.09005 * 109.47263 * 61.69373 * 1 2 3 25 25 H 1.09002 * 109.46906 * 181.69572 * 1 2 3 26 26 H 1.09000 * 108.96389 * 76.75384 * 4 2 1 27 27 H 1.09000 * 108.83326 * 318.22568 * 4 2 1 28 28 H 1.09001 * 108.97979 * 198.18501 * 5 4 2 29 29 H 1.09001 * 108.98224 * 79.38790 * 5 4 2 30 30 H 1.09000 * 109.46786 * 52.92948 * 7 6 5 31 31 H 1.09000 * 109.46789 * 172.92935 * 7 6 5 32 32 H 1.08992 * 109.46863 * 292.93213 * 7 6 5 33 33 H 1.09008 * 109.47114 * 182.17783 * 10 8 6 34 34 H 1.09003 * 109.47062 * 302.17682 * 10 8 6 35 35 H 0.97005 * 119.99769 * 180.02562 * 14 13 11 36 36 H 0.96701 * 113.99401 * 179.97438 * 21 19 8 37 37 H 1.09000 * 109.57479 * 93.14875 * 22 2 1 38 38 H 1.08995 * 109.67718 * 332.82540 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8801 1.0323 0.0000 4 6 2.0248 -0.6899 -1.2876 5 6 3.4996 -1.1242 -1.1892 6 7 4.3133 -0.1242 -0.5417 7 6 5.6242 -0.0085 -1.1948 8 6 4.4626 -0.4621 0.8894 9 1 4.5535 -1.5439 0.9872 10 6 5.7421 0.1889 1.4187 11 6 5.6283 1.6871 1.3031 12 1 4.7693 2.1277 0.8190 13 6 6.6209 2.4955 1.8153 14 7 6.5218 3.8030 1.7139 15 14 8.1071 1.7335 2.6518 16 1 9.1704 1.4881 1.6447 17 1 8.6172 2.6597 3.6945 18 1 7.7152 0.4469 3.2814 19 6 3.3365 -0.0120 1.6998 20 1 3.2402 1.0696 1.6058 21 8 3.5855 -0.3408 3.0681 22 6 2.0141 -0.6755 1.2542 23 1 -0.3633 0.5399 0.8743 24 1 -0.3634 0.4873 -0.9048 25 1 -0.3633 -1.0272 0.0304 26 1 1.9147 0.0003 -2.1241 27 1 1.4090 -1.5697 -1.4744 28 1 3.8854 -1.2993 -2.1935 29 1 3.5588 -2.0521 -0.6203 30 1 5.4845 0.1509 -2.2640 31 1 6.1686 0.8347 -0.7697 32 1 6.1918 -0.9252 -1.0352 33 1 5.8836 -0.0851 2.4642 34 1 6.5945 -0.1570 0.8339 35 1 7.2204 4.3717 2.0740 36 1 2.8794 -0.0724 3.6718 37 1 2.1851 -1.7336 1.0564 38 1 1.2678 -0.5669 2.0411 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260730039.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:05 Heat of formation + Delta-G solvation = -47.142521 kcal Electronic energy + Delta-G solvation = -17370.444145 eV Core-core repulsion = 14826.830685 eV Total energy + Delta-G solvation = -2543.613460 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.52570 -35.83762 -35.32297 -32.70233 -31.06474 -28.83361 -28.30142 -25.76642 -23.87858 -22.40585 -21.75901 -19.33647 -18.72016 -17.18687 -16.26411 -15.08170 -14.90678 -14.70277 -14.18586 -13.91350 -13.36533 -12.86986 -12.63989 -12.46199 -12.42164 -12.14030 -11.70896 -11.51644 -11.36453 -11.19842 -10.91352 -10.75194 -10.26599 -10.16695 -10.09731 -9.76756 -9.73715 -9.50761 -9.03675 -8.86701 -8.42141 -7.53016 -5.92422 -3.86624 3.36563 3.44923 3.51359 4.33050 4.55415 5.03997 5.10429 5.23886 5.34925 5.41651 5.49338 5.58978 5.75573 5.80207 5.93844 5.97835 6.00915 6.04171 6.10175 6.18213 6.23385 6.29127 6.39474 6.52996 6.61244 6.70195 6.82666 6.96837 7.03931 7.23760 7.38656 7.84989 7.90749 7.97705 8.36490 8.68907 9.18587 9.71009 11.20432 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.032170 B = 0.009275 C = 0.008593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.161535 B = 3018.214985 C = 3257.675676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.083 4.083 3 H 0.080 0.920 4 C -0.100 4.100 5 C 0.050 3.950 6 N -0.510 5.510 7 C 0.028 3.972 8 C 0.106 3.894 9 H 0.021 0.979 10 C -0.022 4.022 11 C -0.492 4.492 12 H 0.083 0.917 13 C 0.065 3.935 14 N -0.906 5.906 15 Si 0.870 3.130 16 H -0.281 1.281 17 H -0.290 1.290 18 H -0.266 1.266 19 C 0.124 3.876 20 H 0.078 0.922 21 O -0.563 6.563 22 C -0.143 4.143 23 H 0.051 0.949 24 H 0.050 0.950 25 H 0.047 0.953 26 H 0.059 0.941 27 H 0.051 0.949 28 H 0.056 0.944 29 H 0.031 0.969 30 H 0.050 0.950 31 H 0.106 0.894 32 H 0.011 0.989 33 H 0.033 0.967 34 H 0.011 0.989 35 H 0.260 0.740 36 H 0.367 0.633 37 H 0.056 0.944 38 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.855 -9.304 -3.601 13.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.102 4.102 3 H 0.099 0.901 4 C -0.138 4.138 5 C -0.079 4.079 6 N -0.235 5.235 7 C -0.120 4.120 8 C -0.001 4.001 9 H 0.038 0.962 10 C -0.059 4.059 11 C -0.530 4.530 12 H 0.100 0.900 13 C -0.135 4.135 14 N -0.546 5.546 15 Si 0.698 3.302 16 H -0.207 1.207 17 H -0.216 1.216 18 H -0.190 1.190 19 C 0.065 3.935 20 H 0.096 0.904 21 O -0.366 6.366 22 C -0.181 4.181 23 H 0.070 0.930 24 H 0.069 0.931 25 H 0.066 0.934 26 H 0.078 0.922 27 H 0.070 0.930 28 H 0.075 0.925 29 H 0.049 0.951 30 H 0.068 0.932 31 H 0.125 0.875 32 H 0.029 0.971 33 H 0.051 0.949 34 H 0.029 0.971 35 H 0.069 0.931 36 H 0.212 0.788 37 H 0.075 0.925 38 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -8.436 -8.921 -3.848 12.867 hybrid contribution 0.704 -0.917 0.701 1.352 sum -7.732 -9.838 -3.147 12.902 Atomic orbital electron populations 1.21965 0.96271 1.00898 1.01251 1.20693 0.94004 1.01478 0.93997 0.90129 1.21957 0.95029 0.99346 0.97484 1.21985 0.94297 0.93309 0.98357 1.61207 1.14921 1.45617 1.01736 1.22600 0.90090 1.01917 0.97372 1.20153 0.97125 0.95778 0.87080 0.96160 1.19970 0.91535 0.97684 0.96737 1.21022 1.07448 0.88347 1.36147 0.89953 1.24995 0.97988 0.94689 0.95870 1.69915 1.34297 1.03084 1.47259 0.86926 0.83681 0.79704 0.79865 1.20685 1.21649 1.19026 1.20655 0.92079 0.99808 0.80934 0.90406 1.86522 1.48102 1.84441 1.17576 1.22211 0.98259 1.00260 0.97400 0.93008 0.93107 0.93408 0.92234 0.92998 0.92502 0.95073 0.93164 0.87515 0.97070 0.94851 0.97102 0.93056 0.78795 0.92527 0.92256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.75 8.79 37.15 0.33 -1.42 16 2 C -0.08 -1.22 2.32 -91.24 -0.21 -1.43 16 3 H 0.08 1.39 7.38 -51.92 -0.38 1.00 16 4 C -0.10 -1.39 5.51 -25.53 -0.14 -1.53 16 5 C 0.05 0.79 5.18 -4.68 -0.02 0.76 16 6 N -0.51 -9.78 4.10 -239.73 -0.98 -10.76 16 7 C 0.03 0.53 7.97 60.07 0.48 1.01 16 8 C 0.11 2.21 1.58 -70.60 -0.11 2.09 16 9 H 0.02 0.42 7.24 -51.93 -0.38 0.05 16 10 C -0.02 -0.53 3.07 -27.88 -0.09 -0.62 16 11 C -0.49 -13.55 6.82 -34.44 -0.23 -13.78 16 12 H 0.08 2.47 7.04 -52.49 -0.37 2.10 16 13 C 0.06 1.87 5.47 -17.82 -0.10 1.77 16 14 N -0.91 -27.76 13.96 55.43 0.77 -26.98 16 15 Si 0.87 22.07 27.57 -169.99 -4.69 17.39 16 16 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 17 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 18 H -0.27 -6.65 6.40 56.52 0.36 -6.29 16 19 C 0.12 2.40 2.41 -29.32 -0.07 2.32 16 20 H 0.08 1.72 6.02 -51.93 -0.31 1.41 16 21 O -0.56 -10.85 12.20 -35.23 -0.43 -11.28 16 22 C -0.14 -2.20 4.72 -27.21 -0.13 -2.33 16 23 H 0.05 0.60 8.07 -51.93 -0.42 0.18 16 24 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 25 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 27 H 0.05 0.63 7.98 -51.93 -0.41 0.22 16 28 H 0.06 0.82 7.41 -51.93 -0.38 0.43 16 29 H 0.03 0.49 6.50 -51.93 -0.34 0.15 16 30 H 0.05 0.84 7.86 -51.93 -0.41 0.43 16 31 H 0.11 2.40 5.45 -51.93 -0.28 2.12 16 32 H 0.01 0.20 7.76 -51.93 -0.40 -0.21 16 33 H 0.03 0.87 6.08 -51.92 -0.32 0.55 16 34 H 0.01 0.26 5.88 -51.93 -0.31 -0.04 16 35 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 36 H 0.37 5.30 9.00 45.56 0.41 5.71 16 37 H 0.06 0.87 7.15 -51.93 -0.37 0.50 16 38 H 0.06 0.81 7.62 -51.93 -0.40 0.41 16 LS Contribution 279.45 15.07 4.21 4.21 Total: -1.00 -30.64 279.45 -6.93 -37.56 By element: Atomic # 1 Polarization: 8.53 SS G_CDS: -5.51 Total: 3.02 kcal Atomic # 6 Polarization: -12.86 SS G_CDS: -0.30 Total: -13.16 kcal Atomic # 7 Polarization: -37.54 SS G_CDS: -0.21 Total: -37.74 kcal Atomic # 8 Polarization: -10.85 SS G_CDS: -0.43 Total: -11.28 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -4.69 Total: 17.39 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -30.64 -6.93 -37.56 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260730039.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.578 kcal (2) G-P(sol) polarization free energy of solvation -30.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds