Wall clock time and date at job start Mon Mar 30 2020 03:23:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09010 * 108.73687 * 2 1 4 4 C 1.54236 * 108.71261 * 241.81709 * 2 1 3 5 5 C 1.54060 * 112.32464 * 197.53198 * 4 2 1 6 6 N 1.44270 * 111.91717 * 318.78562 * 5 4 2 7 7 C 1.46910 * 110.99921 * 219.34481 * 6 5 4 8 8 C 1.47799 * 109.45680 * 96.47759 * 6 5 4 9 9 H 1.09006 * 108.79136 * 37.52238 * 8 6 5 10 10 C 1.53002 * 108.79158 * 155.85459 * 8 6 5 11 11 C 1.50695 * 109.47128 * 62.18230 * 10 8 6 12 12 H 1.07995 * 119.99968 * 354.93922 * 11 10 8 13 13 C 1.37880 * 120.00035 * 174.94084 * 11 10 8 14 14 N 1.31517 * 119.99825 * 179.97438 * 13 11 10 15 15 Si 1.86794 * 119.99997 * 0.02562 * 13 11 10 16 16 H 1.48495 * 109.47277 * 89.99766 * 15 13 11 17 17 H 1.48501 * 109.47039 * 209.99994 * 15 13 11 18 18 H 1.48499 * 109.47052 * 329.99676 * 15 13 11 19 19 C 1.45858 * 112.92140 * 276.74511 * 8 6 5 20 20 H 1.08995 * 109.05344 * 300.84735 * 19 8 6 21 21 O 1.42906 * 109.05162 * 181.87042 * 19 8 6 22 22 C 1.50459 * 108.77245 * 118.30438 * 2 1 3 23 23 H 1.08994 * 109.47043 * 301.69537 * 1 2 3 24 24 H 1.09005 * 109.47263 * 61.69373 * 1 2 3 25 25 H 1.09002 * 109.46906 * 181.69572 * 1 2 3 26 26 H 1.09000 * 108.96389 * 76.75384 * 4 2 1 27 27 H 1.09000 * 108.83326 * 318.22568 * 4 2 1 28 28 H 1.09001 * 108.97979 * 198.18501 * 5 4 2 29 29 H 1.09001 * 108.98224 * 79.38790 * 5 4 2 30 30 H 1.09000 * 109.46786 * 52.92948 * 7 6 5 31 31 H 1.09000 * 109.46789 * 172.92935 * 7 6 5 32 32 H 1.08992 * 109.46863 * 292.93213 * 7 6 5 33 33 H 1.09008 * 109.47114 * 182.17783 * 10 8 6 34 34 H 1.09003 * 109.47062 * 302.17682 * 10 8 6 35 35 H 0.97005 * 119.99769 * 180.02562 * 14 13 11 36 36 H 0.96701 * 113.99401 * 179.97438 * 21 19 8 37 37 H 1.09000 * 109.57479 * 93.14875 * 22 2 1 38 38 H 1.08995 * 109.67718 * 332.82540 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8801 1.0323 0.0000 4 6 2.0248 -0.6899 -1.2876 5 6 3.4996 -1.1242 -1.1892 6 7 4.3133 -0.1242 -0.5417 7 6 5.6242 -0.0085 -1.1948 8 6 4.4626 -0.4621 0.8894 9 1 4.5535 -1.5439 0.9872 10 6 5.7421 0.1889 1.4187 11 6 5.6283 1.6871 1.3031 12 1 4.7693 2.1277 0.8190 13 6 6.6209 2.4955 1.8153 14 7 6.5218 3.8030 1.7139 15 14 8.1071 1.7335 2.6518 16 1 9.1704 1.4881 1.6447 17 1 8.6172 2.6597 3.6945 18 1 7.7152 0.4469 3.2814 19 6 3.3365 -0.0120 1.6998 20 1 3.2402 1.0696 1.6058 21 8 3.5855 -0.3408 3.0681 22 6 2.0141 -0.6755 1.2542 23 1 -0.3633 0.5399 0.8743 24 1 -0.3634 0.4873 -0.9048 25 1 -0.3633 -1.0272 0.0304 26 1 1.9147 0.0003 -2.1241 27 1 1.4090 -1.5697 -1.4744 28 1 3.8854 -1.2993 -2.1935 29 1 3.5588 -2.0521 -0.6203 30 1 5.4845 0.1509 -2.2640 31 1 6.1686 0.8347 -0.7697 32 1 6.1918 -0.9252 -1.0352 33 1 5.8836 -0.0851 2.4642 34 1 6.5945 -0.1570 0.8339 35 1 7.2204 4.3717 2.0740 36 1 2.8794 -0.0724 3.6718 37 1 2.1851 -1.7336 1.0564 38 1 1.2678 -0.5669 2.0411 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260730039.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:02 Heat of formation + Delta-G solvation = -69.998931 kcal Electronic energy + Delta-G solvation = -17371.435273 eV Core-core repulsion = 14826.830685 eV Total energy + Delta-G solvation = -2544.604588 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.99507 -37.32238 -36.67040 -34.71697 -32.78084 -30.28700 -29.78565 -27.26160 -25.51691 -23.76854 -23.39530 -20.88911 -20.10731 -19.04548 -18.00297 -16.63697 -16.37861 -16.25257 -15.80055 -15.50791 -14.73810 -14.64841 -14.11665 -13.99700 -13.77402 -13.60500 -13.26373 -13.00488 -12.89363 -12.59341 -12.42676 -12.32958 -11.83338 -11.80083 -11.52850 -11.39471 -11.30033 -11.16184 -10.87392 -10.65389 -10.46753 -9.01769 -8.17242 -6.14313 1.33355 1.37021 1.48108 2.41242 2.88220 3.17254 3.77987 3.88309 4.00668 4.09800 4.20624 4.31982 4.42186 4.51005 4.57168 4.66100 4.77477 4.81390 4.85798 4.92626 4.99084 5.00982 5.09563 5.16684 5.26276 5.33223 5.40473 5.48532 5.49309 5.53742 5.66615 5.75433 6.28675 6.41514 6.58180 6.91182 7.05360 7.45371 8.98727 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.032170 B = 0.009275 C = 0.008593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.161535 B = 3018.214985 C = 3257.675676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.084 4.084 3 H 0.044 0.956 4 C -0.097 4.097 5 C 0.046 3.954 6 N -0.525 5.525 7 C 0.031 3.969 8 C 0.110 3.890 9 H 0.027 0.973 10 C -0.017 4.017 11 C -0.473 4.473 12 H 0.046 0.954 13 C 0.005 3.995 14 N -0.952 5.952 15 Si 0.933 3.067 16 H -0.270 1.270 17 H -0.288 1.288 18 H -0.259 1.259 19 C 0.126 3.874 20 H 0.038 0.962 21 O -0.581 6.581 22 C -0.129 4.129 23 H 0.052 0.948 24 H 0.057 0.943 25 H 0.065 0.935 26 H 0.060 0.940 27 H 0.080 0.920 28 H 0.074 0.926 29 H 0.036 0.964 30 H 0.074 0.926 31 H 0.065 0.935 32 H 0.021 0.979 33 H 0.018 0.982 34 H 0.015 0.985 35 H 0.260 0.740 36 H 0.386 0.614 37 H 0.065 0.935 38 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.779 -11.646 -4.054 15.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.103 4.103 3 H 0.063 0.937 4 C -0.135 4.135 5 C -0.082 4.082 6 N -0.251 5.251 7 C -0.116 4.116 8 C 0.002 3.998 9 H 0.045 0.955 10 C -0.054 4.054 11 C -0.511 4.511 12 H 0.065 0.935 13 C -0.191 4.191 14 N -0.594 5.594 15 Si 0.758 3.242 16 H -0.195 1.195 17 H -0.215 1.215 18 H -0.183 1.183 19 C 0.067 3.933 20 H 0.056 0.944 21 O -0.388 6.388 22 C -0.166 4.166 23 H 0.072 0.928 24 H 0.076 0.924 25 H 0.084 0.916 26 H 0.079 0.921 27 H 0.099 0.901 28 H 0.092 0.908 29 H 0.054 0.946 30 H 0.093 0.907 31 H 0.084 0.916 32 H 0.040 0.960 33 H 0.037 0.963 34 H 0.033 0.967 35 H 0.069 0.931 36 H 0.234 0.766 37 H 0.084 0.916 38 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -9.378 -11.280 -4.302 15.288 hybrid contribution 0.935 -0.167 0.809 1.247 sum -8.444 -11.448 -3.494 14.648 Atomic orbital electron populations 1.21891 0.93789 1.02203 1.01805 1.20670 0.96094 0.99365 0.94189 0.93724 1.21967 0.94134 1.00461 0.96967 1.22107 0.94804 0.92434 0.98902 1.61210 1.15284 1.47493 1.01071 1.22475 0.90062 1.00626 0.98481 1.20099 0.95764 0.95561 0.88359 0.95474 1.19873 0.93969 0.95542 0.96060 1.21065 1.05656 0.90147 1.34249 0.93530 1.25781 1.01157 0.95050 0.97100 1.70055 1.35597 1.04558 1.49208 0.85921 0.80350 0.78907 0.78994 1.19493 1.21462 1.18339 1.20530 0.93915 0.97814 0.81060 0.94436 1.86462 1.49818 1.84453 1.18026 1.22069 0.96186 1.00073 0.98302 0.92844 0.92371 0.91582 0.92145 0.90140 0.90753 0.94555 0.90732 0.91621 0.96008 0.96343 0.96712 0.93076 0.76577 0.91640 0.90232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.92 8.79 71.98 0.63 -2.29 16 2 C -0.08 -2.32 2.32 -11.20 -0.03 -2.34 16 3 H 0.04 1.55 7.38 -2.38 -0.02 1.53 16 4 C -0.10 -2.43 5.51 31.37 0.17 -2.26 16 5 C 0.05 1.33 5.18 87.15 0.45 1.78 16 6 N -0.53 -19.80 4.10 -912.37 -3.74 -23.54 16 7 C 0.03 1.17 7.97 127.69 1.02 2.19 16 8 C 0.11 4.52 1.58 42.55 0.07 4.59 16 9 H 0.03 1.09 7.24 -2.38 -0.02 1.07 16 10 C -0.02 -0.83 3.07 29.85 0.09 -0.74 16 11 C -0.47 -26.95 6.82 25.60 0.17 -26.77 16 12 H 0.05 2.95 7.04 -2.91 -0.02 2.93 16 13 C 0.00 0.27 5.47 84.65 0.46 0.74 16 14 N -0.95 -60.31 13.96 21.45 0.30 -60.01 16 15 Si 0.93 46.15 27.57 68.60 1.89 48.04 16 16 H -0.27 -12.77 7.11 99.48 0.71 -12.06 16 17 H -0.29 -14.11 7.11 99.48 0.71 -13.41 16 18 H -0.26 -12.44 6.40 99.48 0.64 -11.81 16 19 C 0.13 4.84 2.41 28.92 0.07 4.91 16 20 H 0.04 1.74 6.02 -2.39 -0.01 1.73 16 21 O -0.58 -22.09 12.20 -148.98 -1.82 -23.90 16 22 C -0.13 -3.69 4.72 30.28 0.14 -3.55 16 23 H 0.05 1.10 8.07 -2.39 -0.02 1.08 16 24 H 0.06 1.14 8.14 -2.38 -0.02 1.12 16 25 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 26 H 0.06 1.50 8.14 -2.39 -0.02 1.49 16 27 H 0.08 1.59 7.98 -2.39 -0.02 1.58 16 28 H 0.07 1.89 7.41 -2.39 -0.02 1.87 16 29 H 0.04 1.03 6.50 -2.39 -0.02 1.01 16 30 H 0.07 2.38 7.86 -2.39 -0.02 2.36 16 31 H 0.07 3.01 5.45 -2.39 -0.01 3.00 16 32 H 0.02 0.75 7.76 -2.39 -0.02 0.73 16 33 H 0.02 0.95 6.08 -2.38 -0.01 0.94 16 34 H 0.01 0.71 5.88 -2.39 -0.01 0.69 16 35 H 0.26 15.59 8.31 -92.70 -0.77 14.82 16 36 H 0.39 10.84 9.00 -74.06 -0.67 10.17 16 37 H 0.06 1.80 7.15 -2.39 -0.02 1.78 16 38 H 0.08 1.95 7.62 -2.39 -0.02 1.93 16 Total: -1.00 -67.64 279.45 0.19 -67.45 By element: Atomic # 1 Polarization: 15.40 SS G_CDS: 0.30 Total: 15.70 kcal Atomic # 6 Polarization: -27.00 SS G_CDS: 3.26 Total: -23.74 kcal Atomic # 7 Polarization: -80.10 SS G_CDS: -3.44 Total: -83.54 kcal Atomic # 8 Polarization: -22.09 SS G_CDS: -1.82 Total: -23.90 kcal Atomic # 14 Polarization: 46.15 SS G_CDS: 1.89 Total: 48.04 kcal Total: -67.64 0.19 -67.45 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260730039.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.554 kcal (2) G-P(sol) polarization free energy of solvation -67.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds