Wall clock time and date at job start Mon Mar 30 2020 03:01:40
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53003 * 1
3 3 H 1.09002 * 109.46135 * 2 1
4 4 C 1.53035 * 109.45433 * 240.02612 * 2 1 3
5 5 C 1.53117 * 109.28067 * 180.80947 * 4 2 1
6 6 H 1.09002 * 109.51990 * 297.74846 * 5 4 2
7 7 O 1.42900 * 109.58010 * 177.59249 * 5 4 2
8 8 C 1.42897 * 114.00053 * 90.28241 * 7 5 4
9 9 C 1.50705 * 109.47256 * 180.02562 * 8 7 5
10 10 H 1.08007 * 119.99218 * 359.97438 * 9 8 7
11 11 C 1.37868 * 120.00313 * 180.02562 * 9 8 7
12 12 N 1.31511 * 120.00439 * 180.02562 * 11 9 8
13 13 Si 1.86805 * 119.99960 * 359.97438 * 11 9 8
14 14 H 1.48495 * 109.47145 * 90.00241 * 13 11 9
15 15 H 1.48505 * 109.46971 * 210.00001 * 13 11 9
16 16 H 1.48505 * 109.46969 * 330.00044 * 13 11 9
17 17 C 1.53117 * 109.15945 * 57.65280 * 5 4 2
18 18 C 1.53033 * 109.28196 * 302.34618 * 17 5 4
19 19 H 1.09007 * 109.46547 * 299.16541 * 18 17 5
20 20 C 1.52993 * 109.46792 * 179.19588 * 18 17 5
21 21 N 1.46845 * 109.46378 * 119.97929 * 2 1 3
22 22 C 1.46903 * 110.99954 * 305.84495 * 21 2 1
23 23 H 1.08998 * 109.46794 * 299.99909 * 1 2 3
24 24 H 1.08992 * 109.47327 * 60.00272 * 1 2 3
25 25 H 1.09002 * 109.46587 * 180.02562 * 1 2 3
26 26 H 1.09004 * 109.50627 * 300.74696 * 4 2 1
27 27 H 1.09001 * 109.50255 * 60.86657 * 4 2 1
28 28 H 1.09003 * 109.47435 * 300.00124 * 8 7 5
29 29 H 1.08994 * 109.47009 * 60.00310 * 8 7 5
30 30 H 0.96998 * 120.01006 * 180.02562 * 12 11 9
31 31 H 1.09008 * 109.50509 * 182.40627 * 17 5 4
32 32 H 1.08999 * 109.53899 * 62.30974 * 17 5 4
33 33 H 1.09006 * 109.47328 * 299.95186 * 20 18 17
34 34 H 1.09002 * 109.47273 * 59.95018 * 20 18 17
35 35 H 1.08998 * 109.47728 * 179.97438 * 20 18 17
36 36 H 1.08998 * 109.47039 * 59.99634 * 22 21 2
37 37 H 1.08997 * 109.47215 * 180.02562 * 22 21 2
38 38 H 1.09003 * 109.46876 * 300.00227 * 22 21 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8932 1.0277 0.0000
4 6 2.0397 -0.7209 -1.2500
5 6 3.5708 -0.7363 -1.2358
6 1 3.9456 0.2867 -1.2675
7 8 4.0530 -1.4569 -2.3717
8 6 4.2727 -0.6433 -3.5257
9 6 4.7769 -1.5018 -4.6571
10 1 4.9160 -2.5626 -4.5093
11 6 5.0616 -0.9329 -5.8802
12 7 5.5011 -1.6821 -6.8677
13 14 4.8216 0.9020 -6.1355
14 1 6.0756 1.6181 -5.7896
15 1 4.4781 1.1634 -7.5564
16 1 3.7201 1.3832 -5.2633
17 6 4.0546 -1.4191 0.0464
18 6 3.4866 -0.6780 1.2589
19 1 3.8406 0.3530 1.2530
20 6 3.9512 -1.3689 2.5424
21 7 2.0193 -0.6918 1.1993
22 6 1.4375 -0.1106 2.4165
23 1 -0.3633 0.5138 0.8900
24 1 -0.3633 0.5137 -0.8899
25 1 -0.3632 -1.0277 0.0005
26 1 1.6656 -1.7447 -1.2577
27 1 1.6893 -0.1981 -2.1399
28 1 3.3363 -0.1689 -3.8195
29 1 5.0116 0.1238 -3.2941
30 1 5.7017 -1.2819 -7.7282
31 1 5.1438 -1.3952 0.0828
32 1 3.7128 -2.4540 0.0596
33 1 3.5970 -2.3998 2.5489
34 1 5.0402 -1.3586 2.5869
35 1 3.5470 -0.8408 3.4061
36 1 0.3519 -0.2010 2.3793
37 1 1.8170 -0.6412 3.2898
38 1 1.7123 0.9421 2.4837
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000261093056.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:01:40
Heat of formation + Delta-G solvation = -51.942675 kcal
Electronic energy + Delta-G solvation = -16526.928489 eV
Core-core repulsion = 13983.106879 eV
Total energy + Delta-G solvation = -2543.821610 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 227.163 amu
Computer time = 0.32 seconds
Orbital eigenvalues (eV)
-39.61831 -36.76197 -33.58829 -32.91492 -31.95304 -28.65025 -27.72772 -26.23746
-25.83403 -22.02160 -21.08595 -20.93329 -19.60345 -16.86339 -15.96451 -15.65669
-15.49122 -14.92739 -14.59662 -14.20258 -13.60485 -13.24680 -12.94076 -12.82025
-12.48536 -12.30775 -12.06963 -11.76966 -11.61356 -11.52802 -11.42746 -11.07246
-10.95789 -10.72468 -10.59002 -10.33300 -9.98702 -9.83838 -9.17136 -8.80345
-8.42324 -8.29937 -6.11217 -4.10089 3.24095 3.31126 3.32593 3.83233
4.35317 4.47155 4.87019 4.91661 4.97774 5.17112 5.20163 5.31317
5.38006 5.38186 5.45087 5.56155 5.65542 5.69888 5.72994 5.74935
5.85093 5.91397 6.06873 6.11199 6.16061 6.22324 6.27987 6.48865
6.58393 6.68576 7.01581 7.13456 7.15728 7.60844 8.05575 8.68143
9.00709 9.48257 11.01891
Molecular weight = 227.16amu
Principal moments of inertia in cm(-1)
A = 0.039217 B = 0.006236 C = 0.005774
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 713.801213 B = 4489.190843 C = 4848.115494
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.146 4.146
2 C 0.084 3.916
3 H 0.037 0.963
4 C -0.132 4.132
5 C 0.085 3.915
6 H 0.045 0.955
7 O -0.372 6.372
8 C 0.169 3.831
9 C -0.518 4.518
10 H 0.083 0.917
11 C 0.073 3.927
12 N -0.895 5.895
13 Si 0.874 3.126
14 H -0.274 1.274
15 H -0.282 1.282
16 H -0.266 1.266
17 C -0.107 4.107
18 C 0.084 3.916
19 H 0.038 0.962
20 C -0.146 4.146
21 N -0.533 5.533
22 C 0.018 3.982
23 H 0.054 0.946
24 H 0.060 0.940
25 H 0.065 0.935
26 H 0.079 0.921
27 H 0.068 0.932
28 H 0.002 0.998
29 H -0.003 1.003
30 H 0.266 0.734
31 H 0.071 0.929
32 H 0.079 0.921
33 H 0.065 0.935
34 H 0.060 0.940
35 H 0.055 0.945
36 H 0.070 0.930
37 H 0.071 0.929
38 H 0.020 0.980
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -7.649 5.383 17.884 20.183
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.203 4.203
2 C -0.024 4.024
3 H 0.055 0.945
4 C -0.171 4.171
5 C 0.026 3.974
6 H 0.063 0.937
7 O -0.291 6.291
8 C 0.094 3.906
9 C -0.556 4.556
10 H 0.101 0.899
11 C -0.129 4.129
12 N -0.534 5.534
13 Si 0.701 3.299
14 H -0.199 1.199
15 H -0.207 1.207
16 H -0.191 1.191
17 C -0.145 4.145
18 C -0.024 4.024
19 H 0.056 0.944
20 C -0.203 4.203
21 N -0.259 5.259
22 C -0.130 4.130
23 H 0.073 0.927
24 H 0.079 0.921
25 H 0.084 0.916
26 H 0.098 0.902
27 H 0.087 0.913
28 H 0.020 0.980
29 H 0.014 0.986
30 H 0.076 0.924
31 H 0.090 0.910
32 H 0.097 0.903
33 H 0.084 0.916
34 H 0.079 0.921
35 H 0.074 0.926
36 H 0.089 0.911
37 H 0.089 0.911
38 H 0.039 0.961
Dipole moment (debyes) X Y Z Total
from point charges -7.701 4.701 17.645 19.818
hybrid contribution 0.135 2.182 -0.303 2.207
sum -7.566 6.883 17.342 20.134
Atomic orbital electron populations
1.21904 0.94321 1.02661 1.01437 1.21588 0.95333 0.95179 0.90306
0.94527 1.22147 0.96839 1.02096 0.95974 1.21935 0.92588 0.94996
0.87838 0.93711 1.87956 1.85327 1.35620 1.20149 1.20627 0.94188
0.91640 0.84145 1.20907 1.43819 0.97321 0.93580 0.89920 1.24757
0.94657 0.97970 0.95512 1.69871 1.44901 1.35623 1.02999 0.86875
0.79161 0.85999 0.77876 1.19948 1.20728 1.19124 1.21668 1.00306
1.00866 0.91652 1.21579 0.87041 0.97928 0.95848 0.94438 1.21908
1.00956 1.01471 0.95982 1.61981 1.06947 1.55031 1.01944 1.22499
1.00504 0.96948 0.93097 0.92728 0.92129 0.91606 0.90237 0.91350
0.98018 0.98564 0.92368 0.91010 0.90254 0.91574 0.92055 0.92611
0.91134 0.91053 0.96135
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.63 8.77 37.16 0.33 -1.30 16
2 C 0.08 1.13 2.44 -67.72 -0.17 0.96 16
3 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16
4 C -0.13 -2.18 5.00 -26.65 -0.13 -2.31 16
5 C 0.09 1.58 2.67 -26.61 -0.07 1.51 16
6 H 0.04 0.82 7.79 -51.93 -0.40 0.41 16
7 O -0.37 -8.87 9.98 -35.23 -0.35 -9.22 16
8 C 0.17 4.38 4.57 36.01 0.16 4.55 16
9 C -0.52 -15.63 9.99 -34.44 -0.34 -15.97 16
10 H 0.08 2.72 8.06 -52.48 -0.42 2.30 16
11 C 0.07 2.16 5.47 -17.82 -0.10 2.06 16
12 N -0.90 -27.86 13.96 55.43 0.77 -27.08 16
13 Si 0.87 21.60 27.47 -169.99 -4.67 16.93 16
14 H -0.27 -6.60 7.11 56.52 0.40 -6.19 16
15 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16
16 H -0.27 -6.32 6.54 56.52 0.37 -5.95 16
17 C -0.11 -1.67 5.03 -26.65 -0.13 -1.80 16
18 C 0.08 1.08 2.44 -67.73 -0.17 0.91 16
19 H 0.04 0.49 8.14 -51.93 -0.42 0.06 16
20 C -0.15 -1.51 8.77 37.15 0.33 -1.18 16
21 N -0.53 -6.77 4.58 -226.94 -1.04 -7.81 16
22 C 0.02 0.17 8.64 60.07 0.52 0.69 16
23 H 0.05 0.52 6.32 -51.93 -0.33 0.19 16
24 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16
25 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16
26 H 0.08 1.37 8.14 -51.93 -0.42 0.94 16
27 H 0.07 1.16 7.96 -51.93 -0.41 0.75 16
28 H 0.00 0.05 7.02 -51.93 -0.36 -0.31 16
29 H 0.00 -0.08 7.51 -51.93 -0.39 -0.47 16
30 H 0.27 7.66 8.31 -40.82 -0.34 7.32 16
31 H 0.07 1.10 8.14 -51.92 -0.42 0.67 16
32 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16
33 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16
34 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16
35 H 0.05 0.50 6.23 -51.93 -0.32 0.17 16
36 H 0.07 0.64 6.21 -51.93 -0.32 0.32 16
37 H 0.07 0.64 5.96 -51.93 -0.31 0.33 16
38 H 0.02 0.20 8.14 -51.93 -0.42 -0.22 16
LS Contribution 293.34 15.07 4.42 4.42
Total: -1.00 -31.45 293.34 -7.32 -38.76
By element:
Atomic # 1 Polarization: 2.55 SS G_CDS: -6.67 Total: -4.12 kcal
Atomic # 6 Polarization: -12.11 SS G_CDS: 0.22 Total: -11.88 kcal
Atomic # 7 Polarization: -34.62 SS G_CDS: -0.27 Total: -34.89 kcal
Atomic # 8 Polarization: -8.87 SS G_CDS: -0.35 Total: -9.22 kcal
Atomic # 14 Polarization: 21.60 SS G_CDS: -4.67 Total: 16.93 kcal
Total LS contribution 4.42 Total: 4.42 kcal
Total: -31.45 -7.32 -38.76 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000261093056.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -13.181 kcal
(2) G-P(sol) polarization free energy of solvation -31.445 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.627 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.316 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.761 kcal
(6) G-S(sol) free energy of system = (1) + (5) -51.943 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.32 seconds