Wall clock time and date at job start Mon Mar 30 2020 03:01:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.46135 * 2 1 4 4 C 1.53035 * 109.45433 * 240.02612 * 2 1 3 5 5 C 1.53117 * 109.28067 * 180.80947 * 4 2 1 6 6 H 1.09002 * 109.51990 * 297.74846 * 5 4 2 7 7 O 1.42900 * 109.58010 * 177.59249 * 5 4 2 8 8 C 1.42897 * 114.00053 * 90.28241 * 7 5 4 9 9 C 1.50705 * 109.47256 * 180.02562 * 8 7 5 10 10 H 1.08007 * 119.99218 * 359.97438 * 9 8 7 11 11 C 1.37868 * 120.00313 * 180.02562 * 9 8 7 12 12 N 1.31511 * 120.00439 * 180.02562 * 11 9 8 13 13 Si 1.86805 * 119.99960 * 359.97438 * 11 9 8 14 14 H 1.48495 * 109.47145 * 90.00241 * 13 11 9 15 15 H 1.48505 * 109.46971 * 210.00001 * 13 11 9 16 16 H 1.48505 * 109.46969 * 330.00044 * 13 11 9 17 17 C 1.53117 * 109.15945 * 57.65280 * 5 4 2 18 18 C 1.53033 * 109.28196 * 302.34618 * 17 5 4 19 19 H 1.09007 * 109.46547 * 299.16541 * 18 17 5 20 20 C 1.52993 * 109.46792 * 179.19588 * 18 17 5 21 21 N 1.46845 * 109.46378 * 119.97929 * 2 1 3 22 22 C 1.46903 * 110.99954 * 305.84495 * 21 2 1 23 23 H 1.08998 * 109.46794 * 299.99909 * 1 2 3 24 24 H 1.08992 * 109.47327 * 60.00272 * 1 2 3 25 25 H 1.09002 * 109.46587 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.50627 * 300.74696 * 4 2 1 27 27 H 1.09001 * 109.50255 * 60.86657 * 4 2 1 28 28 H 1.09003 * 109.47435 * 300.00124 * 8 7 5 29 29 H 1.08994 * 109.47009 * 60.00310 * 8 7 5 30 30 H 0.96998 * 120.01006 * 180.02562 * 12 11 9 31 31 H 1.09008 * 109.50509 * 182.40627 * 17 5 4 32 32 H 1.08999 * 109.53899 * 62.30974 * 17 5 4 33 33 H 1.09006 * 109.47328 * 299.95186 * 20 18 17 34 34 H 1.09002 * 109.47273 * 59.95018 * 20 18 17 35 35 H 1.08998 * 109.47728 * 179.97438 * 20 18 17 36 36 H 1.08998 * 109.47039 * 59.99634 * 22 21 2 37 37 H 1.08997 * 109.47215 * 180.02562 * 22 21 2 38 38 H 1.09003 * 109.46876 * 300.00227 * 22 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0397 -0.7209 -1.2500 5 6 3.5708 -0.7363 -1.2358 6 1 3.9456 0.2867 -1.2675 7 8 4.0530 -1.4569 -2.3717 8 6 4.2727 -0.6433 -3.5257 9 6 4.7769 -1.5018 -4.6571 10 1 4.9160 -2.5626 -4.5093 11 6 5.0616 -0.9329 -5.8802 12 7 5.5011 -1.6821 -6.8677 13 14 4.8216 0.9020 -6.1355 14 1 6.0756 1.6181 -5.7896 15 1 4.4781 1.1634 -7.5564 16 1 3.7201 1.3832 -5.2633 17 6 4.0546 -1.4191 0.0464 18 6 3.4866 -0.6780 1.2589 19 1 3.8406 0.3530 1.2530 20 6 3.9512 -1.3689 2.5424 21 7 2.0193 -0.6918 1.1993 22 6 1.4375 -0.1106 2.4165 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5137 -0.8899 25 1 -0.3632 -1.0277 0.0005 26 1 1.6656 -1.7447 -1.2577 27 1 1.6893 -0.1981 -2.1399 28 1 3.3363 -0.1689 -3.8195 29 1 5.0116 0.1238 -3.2941 30 1 5.7017 -1.2819 -7.7282 31 1 5.1438 -1.3952 0.0828 32 1 3.7128 -2.4540 0.0596 33 1 3.5970 -2.3998 2.5489 34 1 5.0402 -1.3586 2.5869 35 1 3.5470 -0.8408 3.4061 36 1 0.3519 -0.2010 2.3793 37 1 1.8170 -0.6412 3.2898 38 1 1.7123 0.9421 2.4837 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261093056.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:40 Heat of formation + Delta-G solvation = -51.942675 kcal Electronic energy + Delta-G solvation = -16526.928489 eV Core-core repulsion = 13983.106879 eV Total energy + Delta-G solvation = -2543.821610 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.61831 -36.76197 -33.58829 -32.91492 -31.95304 -28.65025 -27.72772 -26.23746 -25.83403 -22.02160 -21.08595 -20.93329 -19.60345 -16.86339 -15.96451 -15.65669 -15.49122 -14.92739 -14.59662 -14.20258 -13.60485 -13.24680 -12.94076 -12.82025 -12.48536 -12.30775 -12.06963 -11.76966 -11.61356 -11.52802 -11.42746 -11.07246 -10.95789 -10.72468 -10.59002 -10.33300 -9.98702 -9.83838 -9.17136 -8.80345 -8.42324 -8.29937 -6.11217 -4.10089 3.24095 3.31126 3.32593 3.83233 4.35317 4.47155 4.87019 4.91661 4.97774 5.17112 5.20163 5.31317 5.38006 5.38186 5.45087 5.56155 5.65542 5.69888 5.72994 5.74935 5.85093 5.91397 6.06873 6.11199 6.16061 6.22324 6.27987 6.48865 6.58393 6.68576 7.01581 7.13456 7.15728 7.60844 8.05575 8.68143 9.00709 9.48257 11.01891 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.039217 B = 0.006236 C = 0.005774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 713.801213 B = 4489.190843 C = 4848.115494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.084 3.916 3 H 0.037 0.963 4 C -0.132 4.132 5 C 0.085 3.915 6 H 0.045 0.955 7 O -0.372 6.372 8 C 0.169 3.831 9 C -0.518 4.518 10 H 0.083 0.917 11 C 0.073 3.927 12 N -0.895 5.895 13 Si 0.874 3.126 14 H -0.274 1.274 15 H -0.282 1.282 16 H -0.266 1.266 17 C -0.107 4.107 18 C 0.084 3.916 19 H 0.038 0.962 20 C -0.146 4.146 21 N -0.533 5.533 22 C 0.018 3.982 23 H 0.054 0.946 24 H 0.060 0.940 25 H 0.065 0.935 26 H 0.079 0.921 27 H 0.068 0.932 28 H 0.002 0.998 29 H -0.003 1.003 30 H 0.266 0.734 31 H 0.071 0.929 32 H 0.079 0.921 33 H 0.065 0.935 34 H 0.060 0.940 35 H 0.055 0.945 36 H 0.070 0.930 37 H 0.071 0.929 38 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.649 5.383 17.884 20.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.024 4.024 3 H 0.055 0.945 4 C -0.171 4.171 5 C 0.026 3.974 6 H 0.063 0.937 7 O -0.291 6.291 8 C 0.094 3.906 9 C -0.556 4.556 10 H 0.101 0.899 11 C -0.129 4.129 12 N -0.534 5.534 13 Si 0.701 3.299 14 H -0.199 1.199 15 H -0.207 1.207 16 H -0.191 1.191 17 C -0.145 4.145 18 C -0.024 4.024 19 H 0.056 0.944 20 C -0.203 4.203 21 N -0.259 5.259 22 C -0.130 4.130 23 H 0.073 0.927 24 H 0.079 0.921 25 H 0.084 0.916 26 H 0.098 0.902 27 H 0.087 0.913 28 H 0.020 0.980 29 H 0.014 0.986 30 H 0.076 0.924 31 H 0.090 0.910 32 H 0.097 0.903 33 H 0.084 0.916 34 H 0.079 0.921 35 H 0.074 0.926 36 H 0.089 0.911 37 H 0.089 0.911 38 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges -7.701 4.701 17.645 19.818 hybrid contribution 0.135 2.182 -0.303 2.207 sum -7.566 6.883 17.342 20.134 Atomic orbital electron populations 1.21904 0.94321 1.02661 1.01437 1.21588 0.95333 0.95179 0.90306 0.94527 1.22147 0.96839 1.02096 0.95974 1.21935 0.92588 0.94996 0.87838 0.93711 1.87956 1.85327 1.35620 1.20149 1.20627 0.94188 0.91640 0.84145 1.20907 1.43819 0.97321 0.93580 0.89920 1.24757 0.94657 0.97970 0.95512 1.69871 1.44901 1.35623 1.02999 0.86875 0.79161 0.85999 0.77876 1.19948 1.20728 1.19124 1.21668 1.00306 1.00866 0.91652 1.21579 0.87041 0.97928 0.95848 0.94438 1.21908 1.00956 1.01471 0.95982 1.61981 1.06947 1.55031 1.01944 1.22499 1.00504 0.96948 0.93097 0.92728 0.92129 0.91606 0.90237 0.91350 0.98018 0.98564 0.92368 0.91010 0.90254 0.91574 0.92055 0.92611 0.91134 0.91053 0.96135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.63 8.77 37.16 0.33 -1.30 16 2 C 0.08 1.13 2.44 -67.72 -0.17 0.96 16 3 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 4 C -0.13 -2.18 5.00 -26.65 -0.13 -2.31 16 5 C 0.09 1.58 2.67 -26.61 -0.07 1.51 16 6 H 0.04 0.82 7.79 -51.93 -0.40 0.41 16 7 O -0.37 -8.87 9.98 -35.23 -0.35 -9.22 16 8 C 0.17 4.38 4.57 36.01 0.16 4.55 16 9 C -0.52 -15.63 9.99 -34.44 -0.34 -15.97 16 10 H 0.08 2.72 8.06 -52.48 -0.42 2.30 16 11 C 0.07 2.16 5.47 -17.82 -0.10 2.06 16 12 N -0.90 -27.86 13.96 55.43 0.77 -27.08 16 13 Si 0.87 21.60 27.47 -169.99 -4.67 16.93 16 14 H -0.27 -6.60 7.11 56.52 0.40 -6.19 16 15 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 16 H -0.27 -6.32 6.54 56.52 0.37 -5.95 16 17 C -0.11 -1.67 5.03 -26.65 -0.13 -1.80 16 18 C 0.08 1.08 2.44 -67.73 -0.17 0.91 16 19 H 0.04 0.49 8.14 -51.93 -0.42 0.06 16 20 C -0.15 -1.51 8.77 37.15 0.33 -1.18 16 21 N -0.53 -6.77 4.58 -226.94 -1.04 -7.81 16 22 C 0.02 0.17 8.64 60.07 0.52 0.69 16 23 H 0.05 0.52 6.32 -51.93 -0.33 0.19 16 24 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.08 1.37 8.14 -51.93 -0.42 0.94 16 27 H 0.07 1.16 7.96 -51.93 -0.41 0.75 16 28 H 0.00 0.05 7.02 -51.93 -0.36 -0.31 16 29 H 0.00 -0.08 7.51 -51.93 -0.39 -0.47 16 30 H 0.27 7.66 8.31 -40.82 -0.34 7.32 16 31 H 0.07 1.10 8.14 -51.92 -0.42 0.67 16 32 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 33 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.05 0.50 6.23 -51.93 -0.32 0.17 16 36 H 0.07 0.64 6.21 -51.93 -0.32 0.32 16 37 H 0.07 0.64 5.96 -51.93 -0.31 0.33 16 38 H 0.02 0.20 8.14 -51.93 -0.42 -0.22 16 LS Contribution 293.34 15.07 4.42 4.42 Total: -1.00 -31.45 293.34 -7.32 -38.76 By element: Atomic # 1 Polarization: 2.55 SS G_CDS: -6.67 Total: -4.12 kcal Atomic # 6 Polarization: -12.11 SS G_CDS: 0.22 Total: -11.88 kcal Atomic # 7 Polarization: -34.62 SS G_CDS: -0.27 Total: -34.89 kcal Atomic # 8 Polarization: -8.87 SS G_CDS: -0.35 Total: -9.22 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -4.67 Total: 16.93 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -31.45 -7.32 -38.76 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261093056.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.181 kcal (2) G-P(sol) polarization free energy of solvation -31.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds