Wall clock time and date at job start Mon Mar 30 2020 03:01:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.46135 * 2 1 4 4 C 1.53035 * 109.45433 * 240.02612 * 2 1 3 5 5 C 1.53117 * 109.28067 * 180.80947 * 4 2 1 6 6 H 1.09002 * 109.51990 * 297.74846 * 5 4 2 7 7 O 1.42900 * 109.58010 * 177.59249 * 5 4 2 8 8 C 1.42897 * 114.00053 * 90.28241 * 7 5 4 9 9 C 1.50705 * 109.47256 * 180.02562 * 8 7 5 10 10 H 1.08007 * 119.99218 * 359.97438 * 9 8 7 11 11 C 1.37868 * 120.00313 * 180.02562 * 9 8 7 12 12 N 1.31511 * 120.00439 * 180.02562 * 11 9 8 13 13 Si 1.86805 * 119.99960 * 359.97438 * 11 9 8 14 14 H 1.48495 * 109.47145 * 90.00241 * 13 11 9 15 15 H 1.48505 * 109.46971 * 210.00001 * 13 11 9 16 16 H 1.48505 * 109.46969 * 330.00044 * 13 11 9 17 17 C 1.53117 * 109.15945 * 57.65280 * 5 4 2 18 18 C 1.53033 * 109.28196 * 302.34618 * 17 5 4 19 19 H 1.09007 * 109.46547 * 299.16541 * 18 17 5 20 20 C 1.52993 * 109.46792 * 179.19588 * 18 17 5 21 21 N 1.46845 * 109.46378 * 119.97929 * 2 1 3 22 22 C 1.46903 * 110.99954 * 305.84495 * 21 2 1 23 23 H 1.08998 * 109.46794 * 299.99909 * 1 2 3 24 24 H 1.08992 * 109.47327 * 60.00272 * 1 2 3 25 25 H 1.09002 * 109.46587 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.50627 * 300.74696 * 4 2 1 27 27 H 1.09001 * 109.50255 * 60.86657 * 4 2 1 28 28 H 1.09003 * 109.47435 * 300.00124 * 8 7 5 29 29 H 1.08994 * 109.47009 * 60.00310 * 8 7 5 30 30 H 0.96998 * 120.01006 * 180.02562 * 12 11 9 31 31 H 1.09008 * 109.50509 * 182.40627 * 17 5 4 32 32 H 1.08999 * 109.53899 * 62.30974 * 17 5 4 33 33 H 1.09006 * 109.47328 * 299.95186 * 20 18 17 34 34 H 1.09002 * 109.47273 * 59.95018 * 20 18 17 35 35 H 1.08998 * 109.47728 * 179.97438 * 20 18 17 36 36 H 1.08998 * 109.47039 * 59.99634 * 22 21 2 37 37 H 1.08997 * 109.47215 * 180.02562 * 22 21 2 38 38 H 1.09003 * 109.46876 * 300.00227 * 22 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0397 -0.7209 -1.2500 5 6 3.5708 -0.7363 -1.2358 6 1 3.9456 0.2867 -1.2675 7 8 4.0530 -1.4569 -2.3717 8 6 4.2727 -0.6433 -3.5257 9 6 4.7769 -1.5018 -4.6571 10 1 4.9160 -2.5626 -4.5093 11 6 5.0616 -0.9329 -5.8802 12 7 5.5011 -1.6821 -6.8677 13 14 4.8216 0.9020 -6.1355 14 1 6.0756 1.6181 -5.7896 15 1 4.4781 1.1634 -7.5564 16 1 3.7201 1.3832 -5.2633 17 6 4.0546 -1.4191 0.0464 18 6 3.4866 -0.6780 1.2589 19 1 3.8406 0.3530 1.2530 20 6 3.9512 -1.3689 2.5424 21 7 2.0193 -0.6918 1.1993 22 6 1.4375 -0.1106 2.4165 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5137 -0.8899 25 1 -0.3632 -1.0277 0.0005 26 1 1.6656 -1.7447 -1.2577 27 1 1.6893 -0.1981 -2.1399 28 1 3.3363 -0.1689 -3.8195 29 1 5.0116 0.1238 -3.2941 30 1 5.7017 -1.2819 -7.7282 31 1 5.1438 -1.3952 0.0828 32 1 3.7128 -2.4540 0.0596 33 1 3.5970 -2.3998 2.5489 34 1 5.0402 -1.3586 2.5869 35 1 3.5470 -0.8408 3.4061 36 1 0.3519 -0.2010 2.3793 37 1 1.8170 -0.6412 3.2898 38 1 1.7123 0.9421 2.4837 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261093056.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:40 Heat of formation + Delta-G solvation = -73.828514 kcal Electronic energy + Delta-G solvation = -16527.877530 eV Core-core repulsion = 13983.106879 eV Total energy + Delta-G solvation = -2544.770651 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.78368 -38.39900 -35.00813 -34.59355 -33.45375 -30.24315 -29.16636 -27.37940 -26.83468 -24.10023 -22.33072 -22.08332 -20.74408 -19.07337 -17.40518 -16.94476 -16.79975 -16.37585 -16.20106 -15.54401 -14.95078 -14.79619 -14.49147 -14.04105 -13.69535 -13.49295 -13.25991 -13.07074 -12.96746 -12.68760 -12.65737 -12.54352 -12.36675 -11.97956 -11.81136 -11.77049 -11.65389 -11.34477 -11.30447 -10.92599 -10.25900 -9.25310 -8.40196 -6.48512 1.29839 1.33068 1.43999 2.26327 2.86764 2.91767 2.95101 3.76402 3.79238 3.97227 4.01320 4.19310 4.26717 4.42982 4.49428 4.50389 4.52072 4.60567 4.67895 4.82247 4.83275 4.86809 4.92309 4.93757 5.04251 5.06323 5.10165 5.22804 5.24187 5.30469 5.39879 5.44897 5.93319 6.15588 6.21862 6.55394 6.72796 7.16131 8.77047 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.039217 B = 0.006236 C = 0.005774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 713.801213 B = 4489.190843 C = 4848.115494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.088 3.912 3 H 0.039 0.961 4 C -0.128 4.128 5 C 0.074 3.926 6 H 0.050 0.950 7 O -0.400 6.400 8 C 0.182 3.818 9 C -0.548 4.548 10 H 0.030 0.970 11 C 0.015 3.985 12 N -0.941 5.941 13 Si 0.953 3.047 14 H -0.258 1.258 15 H -0.270 1.270 16 H -0.247 1.247 17 C -0.103 4.103 18 C 0.088 3.912 19 H 0.041 0.959 20 C -0.140 4.140 21 N -0.545 5.545 22 C 0.017 3.983 23 H 0.076 0.924 24 H 0.063 0.937 25 H 0.060 0.940 26 H 0.064 0.936 27 H 0.059 0.941 28 H 0.010 0.990 29 H 0.008 0.992 30 H 0.274 0.726 31 H 0.070 0.930 32 H 0.065 0.935 33 H 0.060 0.940 34 H 0.067 0.933 35 H 0.076 0.924 36 H 0.081 0.919 37 H 0.084 0.916 38 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.659 7.944 19.714 22.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.020 4.020 3 H 0.057 0.943 4 C -0.166 4.166 5 C 0.016 3.984 6 H 0.068 0.932 7 O -0.320 6.320 8 C 0.107 3.893 9 C -0.585 4.585 10 H 0.048 0.952 11 C -0.183 4.183 12 N -0.580 5.580 13 Si 0.774 3.226 14 H -0.183 1.183 15 H -0.195 1.195 16 H -0.171 1.171 17 C -0.141 4.141 18 C -0.020 4.020 19 H 0.059 0.941 20 C -0.197 4.197 21 N -0.272 5.272 22 C -0.130 4.130 23 H 0.094 0.906 24 H 0.082 0.918 25 H 0.079 0.921 26 H 0.083 0.917 27 H 0.078 0.922 28 H 0.027 0.973 29 H 0.025 0.975 30 H 0.083 0.917 31 H 0.089 0.911 32 H 0.084 0.916 33 H 0.079 0.921 34 H 0.086 0.914 35 H 0.094 0.906 36 H 0.099 0.901 37 H 0.103 0.897 38 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -8.719 7.249 19.507 22.563 hybrid contribution 0.470 1.250 -0.852 1.584 sum -8.249 8.499 18.655 22.097 Atomic orbital electron populations 1.21868 0.92493 1.02732 1.02704 1.21526 0.96735 0.94602 0.89144 0.94276 1.22080 0.95242 1.01630 0.97690 1.22323 0.94062 0.95092 0.86929 0.93213 1.87911 1.86026 1.36911 1.21109 1.20318 0.94332 0.90915 0.83762 1.21160 1.45471 0.95705 0.96199 0.95171 1.25819 0.93511 1.04374 0.94578 1.70022 1.45527 1.38587 1.03835 0.85643 0.80268 0.78024 0.78649 1.18265 1.19480 1.17106 1.21665 1.00397 1.00326 0.91724 1.21548 0.87333 0.97796 0.95336 0.94126 1.21873 1.01496 1.01114 0.95251 1.61965 1.06807 1.55623 1.02762 1.22583 1.01059 0.97337 0.92007 0.90551 0.91806 0.92128 0.91730 0.92246 0.97263 0.97457 0.91691 0.91141 0.91578 0.92054 0.91370 0.90555 0.90084 0.89748 0.95451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.80 8.77 71.98 0.63 -2.17 16 2 C 0.09 2.19 2.44 44.94 0.11 2.30 16 3 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 4 C -0.13 -4.18 5.00 30.65 0.15 -4.02 16 5 C 0.07 2.72 2.67 30.67 0.08 2.81 16 6 H 0.05 1.77 7.79 -2.39 -0.02 1.75 16 7 O -0.40 -19.62 9.98 -148.98 -1.49 -21.11 16 8 C 0.18 9.51 4.57 71.24 0.33 9.84 16 9 C -0.55 -34.27 9.99 25.60 0.26 -34.02 16 10 H 0.03 2.12 8.06 -2.91 -0.02 2.10 16 11 C 0.02 0.93 5.47 84.65 0.46 1.39 16 12 N -0.94 -59.93 13.96 21.44 0.30 -59.63 16 13 Si 0.95 43.99 27.47 68.60 1.88 45.87 16 14 H -0.26 -11.25 7.11 99.48 0.71 -10.55 16 15 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 16 H -0.25 -10.60 6.54 99.48 0.65 -9.95 16 17 C -0.10 -3.19 5.03 30.64 0.15 -3.04 16 18 C 0.09 2.09 2.44 44.93 0.11 2.20 16 19 H 0.04 0.95 8.14 -2.38 -0.02 0.93 16 20 C -0.14 -2.55 8.77 71.98 0.63 -1.91 16 21 N -0.55 -12.60 4.58 -871.92 -3.99 -16.59 16 22 C 0.02 0.28 8.64 127.69 1.10 1.39 16 23 H 0.08 1.20 6.32 -2.39 -0.02 1.18 16 24 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 25 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 26 H 0.06 2.26 8.14 -2.38 -0.02 2.24 16 27 H 0.06 2.00 7.96 -2.39 -0.02 1.98 16 28 H 0.01 0.48 7.02 -2.39 -0.02 0.47 16 29 H 0.01 0.38 7.51 -2.39 -0.02 0.37 16 30 H 0.27 15.95 8.31 -92.71 -0.77 15.18 16 31 H 0.07 2.15 8.14 -2.38 -0.02 2.13 16 32 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 33 H 0.06 1.18 8.14 -2.38 -0.02 1.16 16 34 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.08 1.09 6.23 -2.39 -0.01 1.07 16 36 H 0.08 1.18 6.21 -2.39 -0.01 1.16 16 37 H 0.08 1.18 5.96 -2.39 -0.01 1.16 16 38 H 0.03 0.42 8.14 -2.39 -0.02 0.41 16 Total: -1.00 -70.04 293.34 1.67 -68.37 By element: Atomic # 1 Polarization: 7.38 SS G_CDS: 0.95 Total: 8.32 kcal Atomic # 6 Polarization: -29.25 SS G_CDS: 4.02 Total: -25.23 kcal Atomic # 7 Polarization: -72.53 SS G_CDS: -3.70 Total: -76.23 kcal Atomic # 8 Polarization: -19.62 SS G_CDS: -1.49 Total: -21.11 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 1.88 Total: 45.87 kcal Total: -70.04 1.67 -68.37 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261093056.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.455 kcal (2) G-P(sol) polarization free energy of solvation -70.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds