Wall clock time and date at job start Mon Mar 30 2020 03:19:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42899 * 113.99778 * 2 1 4 4 H 1.09003 * 109.50394 * 30.00448 * 3 2 1 5 5 C 1.53035 * 109.50585 * 269.92325 * 3 2 1 6 6 N 1.46848 * 109.52577 * 180.88044 * 5 3 2 7 7 C 1.46898 * 110.99906 * 185.83873 * 6 5 3 8 8 C 1.53008 * 109.46865 * 190.00073 * 7 6 5 9 9 C 1.50700 * 109.47025 * 180.02562 * 8 7 6 10 10 H 1.08005 * 119.99746 * 359.97438 * 9 8 7 11 11 C 1.37871 * 119.99963 * 179.97438 * 9 8 7 12 12 N 1.31515 * 119.99960 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 119.99930 * 180.02562 * 11 9 8 14 14 H 1.48498 * 109.47106 * 90.00052 * 13 11 9 15 15 H 1.48507 * 109.47304 * 210.00031 * 13 11 9 16 16 H 1.48502 * 109.47306 * 330.00046 * 13 11 9 17 17 C 1.46846 * 111.19488 * 61.74346 * 6 5 3 18 18 C 1.53039 * 109.52195 * 298.25486 * 17 6 5 19 19 C 1.53119 * 109.30756 * 59.16598 * 18 17 6 20 20 H 1.08996 * 109.49704 * 62.28867 * 19 18 17 21 21 C 1.53001 * 109.55674 * 182.47988 * 19 18 17 22 22 H 1.09001 * 109.47103 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.47054 * 299.99711 * 1 2 3 24 24 H 1.09000 * 109.47187 * 59.99767 * 1 2 3 25 25 H 1.08999 * 109.46619 * 300.89880 * 5 3 2 26 26 H 1.08999 * 109.46188 * 60.86652 * 5 3 2 27 27 H 1.08999 * 109.47416 * 309.99987 * 7 6 5 28 28 H 1.08994 * 109.47212 * 70.00421 * 7 6 5 29 29 H 1.08999 * 109.47033 * 300.00148 * 8 7 6 30 30 H 1.08994 * 109.46922 * 60.00170 * 8 7 6 31 31 H 0.97008 * 119.99796 * 180.02562 * 12 11 9 32 32 H 1.08994 * 109.46691 * 58.27626 * 17 6 5 33 33 H 1.09007 * 109.46138 * 178.24465 * 17 6 5 34 34 H 1.09006 * 109.49858 * 179.11939 * 18 17 6 35 35 H 1.08996 * 109.50467 * 299.20023 * 18 17 6 36 36 H 1.08997 * 109.47489 * 179.69616 * 21 19 18 37 37 H 1.09001 * 109.47324 * 299.70134 * 21 19 18 38 38 H 1.09001 * 109.47444 * 59.69324 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3454 1.9998 0.5138 5 6 2.2198 1.7715 -1.4425 6 7 2.8364 3.1043 -1.4431 7 6 2.9259 3.6423 -2.8070 8 6 3.7888 4.9059 -2.8012 9 6 3.8802 5.4582 -4.2003 10 1 3.3738 4.9578 -5.0125 11 6 4.6101 6.6023 -4.4435 12 7 5.2272 7.2112 -3.4545 13 14 4.7228 7.2874 -6.1777 14 1 3.6118 8.2463 -6.4042 15 1 6.0221 7.9852 -6.3509 16 1 4.6239 6.1752 -7.1567 17 6 4.1562 3.0789 -0.7996 18 6 4.0044 2.6520 0.6621 19 6 3.3610 1.2637 0.7199 20 1 4.0126 0.5401 0.2301 21 6 3.1499 0.8574 2.1798 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 2.8731 1.0689 -1.9599 26 1 1.2578 1.8162 -1.9531 27 1 3.3769 2.8974 -3.4626 28 1 1.9267 3.8864 -3.1676 29 1 3.3379 5.6508 -2.1456 30 1 4.7880 4.6617 -2.4406 31 1 5.7405 8.0164 -3.6256 32 1 4.8004 2.3702 -1.3200 33 1 4.6006 4.0733 -0.8433 34 1 4.9859 2.6182 1.1351 35 1 3.3721 3.3683 1.1867 36 1 2.6870 -0.1286 2.2193 37 1 4.1119 0.8279 2.6915 38 1 2.5005 1.5835 2.6688 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299893171.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:04 Heat of formation + Delta-G solvation = -60.319990 kcal Electronic energy + Delta-G solvation = -16382.210459 eV Core-core repulsion = 13838.025581 eV Total energy + Delta-G solvation = -2544.184878 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.44638 -36.97493 -34.51283 -32.81988 -30.18847 -29.67460 -27.34144 -26.33320 -24.08158 -22.79365 -21.95122 -20.09092 -19.40396 -16.68649 -16.27997 -15.45059 -15.33970 -14.56449 -14.51965 -14.40066 -13.72810 -13.47375 -13.14778 -12.95129 -12.23027 -12.08519 -12.02875 -11.84447 -11.48332 -11.20666 -10.99962 -10.89581 -10.57385 -10.55646 -10.29568 -10.24097 -9.89304 -9.57622 -9.17809 -9.06407 -8.34737 -7.70340 -6.00983 -4.03211 3.31895 3.38006 3.41296 3.70746 4.42486 4.62814 4.83326 4.95716 5.10678 5.27798 5.33956 5.35193 5.42684 5.49699 5.58169 5.66348 5.72729 5.80271 5.86878 6.04324 6.05507 6.11250 6.21860 6.28654 6.33830 6.44485 6.57371 6.61732 6.92075 7.21053 7.50636 7.62827 7.79498 7.84948 8.03950 8.42331 9.03251 9.60583 11.10415 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.046908 B = 0.005455 C = 0.004999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 596.768048 B = 5132.023014 C = 5600.307115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.387 6.387 3 C 0.098 3.902 4 H 0.068 0.932 5 C 0.036 3.964 6 N -0.537 5.537 7 C 0.063 3.937 8 C 0.021 3.979 9 C -0.522 4.522 10 H 0.054 0.946 11 C 0.059 3.941 12 N -0.894 5.894 13 Si 0.893 3.107 14 H -0.280 1.280 15 H -0.286 1.286 16 H -0.274 1.274 17 C 0.047 3.953 18 C -0.110 4.110 19 C -0.089 4.089 20 H 0.072 0.928 21 C -0.141 4.141 22 H 0.081 0.919 23 H 0.039 0.961 24 H 0.041 0.959 25 H 0.034 0.966 26 H 0.068 0.932 27 H 0.020 0.980 28 H 0.062 0.938 29 H 0.025 0.975 30 H 0.021 0.979 31 H 0.261 0.739 32 H 0.028 0.972 33 H 0.097 0.903 34 H 0.069 0.931 35 H 0.070 0.930 36 H 0.058 0.942 37 H 0.053 0.947 38 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.866 -12.052 9.106 16.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.305 6.305 3 C 0.040 3.960 4 H 0.086 0.914 5 C -0.093 4.093 6 N -0.263 5.263 7 C -0.063 4.063 8 C -0.016 4.016 9 C -0.561 4.561 10 H 0.072 0.928 11 C -0.143 4.143 12 N -0.533 5.533 13 Si 0.720 3.280 14 H -0.206 1.206 15 H -0.212 1.212 16 H -0.199 1.199 17 C -0.081 4.081 18 C -0.148 4.148 19 C -0.107 4.107 20 H 0.090 0.910 21 C -0.199 4.199 22 H 0.100 0.900 23 H 0.058 0.942 24 H 0.060 0.940 25 H 0.052 0.948 26 H 0.087 0.913 27 H 0.038 0.962 28 H 0.080 0.920 29 H 0.043 0.957 30 H 0.039 0.961 31 H 0.070 0.930 32 H 0.046 0.954 33 H 0.115 0.885 34 H 0.088 0.912 35 H 0.089 0.911 36 H 0.077 0.923 37 H 0.072 0.928 38 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -5.949 -11.771 9.417 16.206 hybrid contribution 0.353 0.122 -1.546 1.591 sum -5.595 -11.649 7.871 15.132 Atomic orbital electron populations 1.22750 0.81495 1.02195 1.00040 1.87864 1.19323 1.28262 1.95022 1.22168 0.94819 0.83633 0.95378 0.91432 1.22472 0.99763 0.90711 0.96361 1.62003 1.22217 1.20846 1.21188 1.22317 1.00774 0.97926 0.85300 1.19252 0.94272 0.90928 0.97178 1.21185 1.31120 1.09797 0.93959 0.92766 1.24983 0.95504 0.96791 0.96984 1.69966 1.32966 1.19288 1.31086 0.86588 0.77398 0.79144 0.84834 1.20619 1.21211 1.19927 1.22253 0.90206 1.02497 0.93139 1.21668 1.00545 0.95245 0.97298 1.21259 0.95416 0.98070 0.95982 0.90962 1.21752 1.01327 1.01424 0.95373 0.90049 0.94201 0.94024 0.94752 0.91332 0.96180 0.91984 0.95659 0.96059 0.92978 0.95409 0.88490 0.91232 0.91095 0.92329 0.92816 0.92989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 10.82 101.05 1.09 1.42 16 2 O -0.39 -5.24 9.79 -35.23 -0.34 -5.58 16 3 C 0.10 1.38 2.18 -26.65 -0.06 1.32 16 4 H 0.07 0.95 7.79 -51.93 -0.40 0.55 16 5 C 0.04 0.58 5.04 -3.83 -0.02 0.56 16 6 N -0.54 -10.07 4.81 -234.67 -1.13 -11.20 16 7 C 0.06 1.37 5.21 -3.82 -0.02 1.35 16 8 C 0.02 0.54 4.22 -27.88 -0.12 0.42 16 9 C -0.52 -14.84 9.11 -34.44 -0.31 -15.16 16 10 H 0.05 1.50 7.74 -52.48 -0.41 1.10 16 11 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 12 N -0.89 -26.77 13.29 55.43 0.74 -26.04 16 13 Si 0.89 21.69 29.54 -169.99 -5.02 16.67 16 14 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 15 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 16 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 17 C 0.05 0.83 4.85 -3.83 -0.02 0.81 16 18 C -0.11 -1.56 5.38 -26.65 -0.14 -1.71 16 19 C -0.09 -1.18 2.52 -90.49 -0.23 -1.41 16 20 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 21 C -0.14 -1.59 9.08 37.16 0.34 -1.25 16 22 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 23 H 0.04 0.37 8.09 -51.93 -0.42 -0.05 16 24 H 0.04 0.42 7.90 -51.93 -0.41 0.01 16 25 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.07 1.08 7.88 -51.93 -0.41 0.67 16 27 H 0.02 0.44 8.08 -51.93 -0.42 0.02 16 28 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 29 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.02 0.57 6.21 -51.93 -0.32 0.25 16 31 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 32 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.10 1.94 5.81 -51.92 -0.30 1.64 16 34 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.06 0.65 7.76 -51.93 -0.40 0.25 16 37 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 LS Contribution 299.59 15.07 4.51 4.51 Total: -1.00 -29.85 299.59 -7.69 -37.54 By element: Atomic # 1 Polarization: 2.98 SS G_CDS: -6.86 Total: -3.88 kcal Atomic # 6 Polarization: -12.44 SS G_CDS: 0.42 Total: -12.03 kcal Atomic # 7 Polarization: -36.85 SS G_CDS: -0.39 Total: -37.24 kcal Atomic # 8 Polarization: -5.24 SS G_CDS: -0.34 Total: -5.58 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -29.85 -7.69 -37.54 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299893171.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.779 kcal (2) G-P(sol) polarization free energy of solvation -29.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds