Wall clock time and date at job start Mon Mar 30 2020 03:19:04
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42905 * 1
3 3 C 1.42899 * 113.99778 * 2 1
4 4 H 1.09003 * 109.50394 * 30.00448 * 3 2 1
5 5 C 1.53035 * 109.50585 * 269.92325 * 3 2 1
6 6 N 1.46848 * 109.52577 * 180.88044 * 5 3 2
7 7 C 1.46898 * 110.99906 * 185.83873 * 6 5 3
8 8 C 1.53008 * 109.46865 * 190.00073 * 7 6 5
9 9 C 1.50700 * 109.47025 * 180.02562 * 8 7 6
10 10 H 1.08005 * 119.99746 * 359.97438 * 9 8 7
11 11 C 1.37871 * 119.99963 * 179.97438 * 9 8 7
12 12 N 1.31515 * 119.99960 * 0.02562 * 11 9 8
13 13 Si 1.86800 * 119.99930 * 180.02562 * 11 9 8
14 14 H 1.48498 * 109.47106 * 90.00052 * 13 11 9
15 15 H 1.48507 * 109.47304 * 210.00031 * 13 11 9
16 16 H 1.48502 * 109.47306 * 330.00046 * 13 11 9
17 17 C 1.46846 * 111.19488 * 61.74346 * 6 5 3
18 18 C 1.53039 * 109.52195 * 298.25486 * 17 6 5
19 19 C 1.53119 * 109.30756 * 59.16598 * 18 17 6
20 20 H 1.08996 * 109.49704 * 62.28867 * 19 18 17
21 21 C 1.53001 * 109.55674 * 182.47988 * 19 18 17
22 22 H 1.09001 * 109.47103 * 180.02562 * 1 2 3
23 23 H 1.09004 * 109.47054 * 299.99711 * 1 2 3
24 24 H 1.09000 * 109.47187 * 59.99767 * 1 2 3
25 25 H 1.08999 * 109.46619 * 300.89880 * 5 3 2
26 26 H 1.08999 * 109.46188 * 60.86652 * 5 3 2
27 27 H 1.08999 * 109.47416 * 309.99987 * 7 6 5
28 28 H 1.08994 * 109.47212 * 70.00421 * 7 6 5
29 29 H 1.08999 * 109.47033 * 300.00148 * 8 7 6
30 30 H 1.08994 * 109.46922 * 60.00170 * 8 7 6
31 31 H 0.97008 * 119.99796 * 180.02562 * 12 11 9
32 32 H 1.08994 * 109.46691 * 58.27626 * 17 6 5
33 33 H 1.09007 * 109.46138 * 178.24465 * 17 6 5
34 34 H 1.09006 * 109.49858 * 179.11939 * 18 17 6
35 35 H 1.08996 * 109.50467 * 299.20023 * 18 17 6
36 36 H 1.08997 * 109.47489 * 179.69616 * 21 19 18
37 37 H 1.09001 * 109.47324 * 299.70134 * 21 19 18
38 38 H 1.09001 * 109.47444 * 59.69324 * 21 19 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4291 0.0000 0.0000
3 6 2.0102 1.3055 0.0000
4 1 1.3454 1.9998 0.5138
5 6 2.2198 1.7715 -1.4425
6 7 2.8364 3.1043 -1.4431
7 6 2.9259 3.6423 -2.8070
8 6 3.7888 4.9059 -2.8012
9 6 3.8802 5.4582 -4.2003
10 1 3.3738 4.9578 -5.0125
11 6 4.6101 6.6023 -4.4435
12 7 5.2272 7.2112 -3.4545
13 14 4.7228 7.2874 -6.1777
14 1 3.6118 8.2463 -6.4042
15 1 6.0221 7.9852 -6.3509
16 1 4.6239 6.1752 -7.1567
17 6 4.1562 3.0789 -0.7996
18 6 4.0044 2.6520 0.6621
19 6 3.3610 1.2637 0.7199
20 1 4.0126 0.5401 0.2301
21 6 3.1499 0.8574 2.1798
22 1 -0.3633 -1.0277 0.0005
23 1 -0.3633 0.5138 0.8900
24 1 -0.3633 0.5139 -0.8900
25 1 2.8731 1.0689 -1.9599
26 1 1.2578 1.8162 -1.9531
27 1 3.3769 2.8974 -3.4626
28 1 1.9267 3.8864 -3.1676
29 1 3.3379 5.6508 -2.1456
30 1 4.7880 4.6617 -2.4406
31 1 5.7405 8.0164 -3.6256
32 1 4.8004 2.3702 -1.3200
33 1 4.6006 4.0733 -0.8433
34 1 4.9859 2.6182 1.1351
35 1 3.3721 3.3683 1.1867
36 1 2.6870 -0.1286 2.2193
37 1 4.1119 0.8279 2.6915
38 1 2.5005 1.5835 2.6688
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000299893171.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:19:04
Heat of formation + Delta-G solvation = -60.319990 kcal
Electronic energy + Delta-G solvation = -16382.210459 eV
Core-core repulsion = 13838.025581 eV
Total energy + Delta-G solvation = -2544.184878 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 227.163 amu
Computer time = 0.33 seconds
Orbital eigenvalues (eV)
-39.44638 -36.97493 -34.51283 -32.81988 -30.18847 -29.67460 -27.34144 -26.33320
-24.08158 -22.79365 -21.95122 -20.09092 -19.40396 -16.68649 -16.27997 -15.45059
-15.33970 -14.56449 -14.51965 -14.40066 -13.72810 -13.47375 -13.14778 -12.95129
-12.23027 -12.08519 -12.02875 -11.84447 -11.48332 -11.20666 -10.99962 -10.89581
-10.57385 -10.55646 -10.29568 -10.24097 -9.89304 -9.57622 -9.17809 -9.06407
-8.34737 -7.70340 -6.00983 -4.03211 3.31895 3.38006 3.41296 3.70746
4.42486 4.62814 4.83326 4.95716 5.10678 5.27798 5.33956 5.35193
5.42684 5.49699 5.58169 5.66348 5.72729 5.80271 5.86878 6.04324
6.05507 6.11250 6.21860 6.28654 6.33830 6.44485 6.57371 6.61732
6.92075 7.21053 7.50636 7.62827 7.79498 7.84948 8.03950 8.42331
9.03251 9.60583 11.10415
Molecular weight = 227.16amu
Principal moments of inertia in cm(-1)
A = 0.046908 B = 0.005455 C = 0.004999
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 596.768048 B = 5132.023014 C = 5600.307115
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.032 3.968
2 O -0.387 6.387
3 C 0.098 3.902
4 H 0.068 0.932
5 C 0.036 3.964
6 N -0.537 5.537
7 C 0.063 3.937
8 C 0.021 3.979
9 C -0.522 4.522
10 H 0.054 0.946
11 C 0.059 3.941
12 N -0.894 5.894
13 Si 0.893 3.107
14 H -0.280 1.280
15 H -0.286 1.286
16 H -0.274 1.274
17 C 0.047 3.953
18 C -0.110 4.110
19 C -0.089 4.089
20 H 0.072 0.928
21 C -0.141 4.141
22 H 0.081 0.919
23 H 0.039 0.961
24 H 0.041 0.959
25 H 0.034 0.966
26 H 0.068 0.932
27 H 0.020 0.980
28 H 0.062 0.938
29 H 0.025 0.975
30 H 0.021 0.979
31 H 0.261 0.739
32 H 0.028 0.972
33 H 0.097 0.903
34 H 0.069 0.931
35 H 0.070 0.930
36 H 0.058 0.942
37 H 0.053 0.947
38 H 0.051 0.949
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.866 -12.052 9.106 16.204
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.065 4.065
2 O -0.305 6.305
3 C 0.040 3.960
4 H 0.086 0.914
5 C -0.093 4.093
6 N -0.263 5.263
7 C -0.063 4.063
8 C -0.016 4.016
9 C -0.561 4.561
10 H 0.072 0.928
11 C -0.143 4.143
12 N -0.533 5.533
13 Si 0.720 3.280
14 H -0.206 1.206
15 H -0.212 1.212
16 H -0.199 1.199
17 C -0.081 4.081
18 C -0.148 4.148
19 C -0.107 4.107
20 H 0.090 0.910
21 C -0.199 4.199
22 H 0.100 0.900
23 H 0.058 0.942
24 H 0.060 0.940
25 H 0.052 0.948
26 H 0.087 0.913
27 H 0.038 0.962
28 H 0.080 0.920
29 H 0.043 0.957
30 H 0.039 0.961
31 H 0.070 0.930
32 H 0.046 0.954
33 H 0.115 0.885
34 H 0.088 0.912
35 H 0.089 0.911
36 H 0.077 0.923
37 H 0.072 0.928
38 H 0.070 0.930
Dipole moment (debyes) X Y Z Total
from point charges -5.949 -11.771 9.417 16.206
hybrid contribution 0.353 0.122 -1.546 1.591
sum -5.595 -11.649 7.871 15.132
Atomic orbital electron populations
1.22750 0.81495 1.02195 1.00040 1.87864 1.19323 1.28262 1.95022
1.22168 0.94819 0.83633 0.95378 0.91432 1.22472 0.99763 0.90711
0.96361 1.62003 1.22217 1.20846 1.21188 1.22317 1.00774 0.97926
0.85300 1.19252 0.94272 0.90928 0.97178 1.21185 1.31120 1.09797
0.93959 0.92766 1.24983 0.95504 0.96791 0.96984 1.69966 1.32966
1.19288 1.31086 0.86588 0.77398 0.79144 0.84834 1.20619 1.21211
1.19927 1.22253 0.90206 1.02497 0.93139 1.21668 1.00545 0.95245
0.97298 1.21259 0.95416 0.98070 0.95982 0.90962 1.21752 1.01327
1.01424 0.95373 0.90049 0.94201 0.94024 0.94752 0.91332 0.96180
0.91984 0.95659 0.96059 0.92978 0.95409 0.88490 0.91232 0.91095
0.92329 0.92816 0.92989
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.33 10.82 101.05 1.09 1.42 16
2 O -0.39 -5.24 9.79 -35.23 -0.34 -5.58 16
3 C 0.10 1.38 2.18 -26.65 -0.06 1.32 16
4 H 0.07 0.95 7.79 -51.93 -0.40 0.55 16
5 C 0.04 0.58 5.04 -3.83 -0.02 0.56 16
6 N -0.54 -10.07 4.81 -234.67 -1.13 -11.20 16
7 C 0.06 1.37 5.21 -3.82 -0.02 1.35 16
8 C 0.02 0.54 4.22 -27.88 -0.12 0.42 16
9 C -0.52 -14.84 9.11 -34.44 -0.31 -15.16 16
10 H 0.05 1.50 7.74 -52.48 -0.41 1.10 16
11 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16
12 N -0.89 -26.77 13.29 55.43 0.74 -26.04 16
13 Si 0.89 21.69 29.54 -169.99 -5.02 16.67 16
14 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16
15 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16
16 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16
17 C 0.05 0.83 4.85 -3.83 -0.02 0.81 16
18 C -0.11 -1.56 5.38 -26.65 -0.14 -1.71 16
19 C -0.09 -1.18 2.52 -90.49 -0.23 -1.41 16
20 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16
21 C -0.14 -1.59 9.08 37.16 0.34 -1.25 16
22 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16
23 H 0.04 0.37 8.09 -51.93 -0.42 -0.05 16
24 H 0.04 0.42 7.90 -51.93 -0.41 0.01 16
25 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16
26 H 0.07 1.08 7.88 -51.93 -0.41 0.67 16
27 H 0.02 0.44 8.08 -51.93 -0.42 0.02 16
28 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16
29 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16
30 H 0.02 0.57 6.21 -51.93 -0.32 0.25 16
31 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16
32 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16
33 H 0.10 1.94 5.81 -51.92 -0.30 1.64 16
34 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16
35 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16
36 H 0.06 0.65 7.76 -51.93 -0.40 0.25 16
37 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16
38 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16
LS Contribution 299.59 15.07 4.51 4.51
Total: -1.00 -29.85 299.59 -7.69 -37.54
By element:
Atomic # 1 Polarization: 2.98 SS G_CDS: -6.86 Total: -3.88 kcal
Atomic # 6 Polarization: -12.44 SS G_CDS: 0.42 Total: -12.03 kcal
Atomic # 7 Polarization: -36.85 SS G_CDS: -0.39 Total: -37.24 kcal
Atomic # 8 Polarization: -5.24 SS G_CDS: -0.34 Total: -5.58 kcal
Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal
Total LS contribution 4.51 Total: 4.51 kcal
Total: -29.85 -7.69 -37.54 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000299893171.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -22.779 kcal
(2) G-P(sol) polarization free energy of solvation -29.855 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.634 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.686 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.541 kcal
(6) G-S(sol) free energy of system = (1) + (5) -60.320 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.33 seconds