Wall clock time and date at job start Mon Mar 30 2020 02:55:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53006 * 109.46922 * 2 1 4 4 N 1.46493 * 109.47517 * 119.99770 * 2 1 3 5 5 C 1.36937 * 120.00370 * 176.45505 * 4 2 1 6 6 H 1.07996 * 120.00240 * 173.31012 * 5 4 2 7 7 C 1.38816 * 120.00054 * 353.31656 * 5 4 2 8 8 N 1.31627 * 119.99491 * 328.13078 * 7 5 4 9 9 Si 1.86794 * 120.00371 * 148.12600 * 7 5 4 10 10 H 1.48505 * 109.46966 * 94.98958 * 9 7 5 11 11 H 1.48495 * 109.47325 * 214.98941 * 9 7 5 12 12 H 1.48502 * 109.46879 * 334.99404 * 9 7 5 13 13 C 1.46509 * 119.99881 * 356.46156 * 4 2 1 14 14 C 1.53002 * 109.46522 * 263.22421 * 13 4 2 15 15 H 1.09000 * 110.42405 * 308.35396 * 14 13 4 16 16 C 1.54482 * 110.36669 * 186.04681 * 14 13 4 17 17 C 1.54514 * 104.06168 * 217.19129 * 16 14 13 18 18 C 1.54477 * 104.06177 * 359.97438 * 17 16 14 19 19 H 1.09008 * 110.37428 * 265.03947 * 18 17 16 20 20 C 1.53001 * 110.37407 * 142.81420 * 18 17 16 21 21 O 1.44420 * 104.80378 * 23.97990 * 18 17 16 22 22 H 1.08993 * 109.46833 * 299.99887 * 1 2 3 23 23 H 1.09000 * 109.47001 * 60.00049 * 1 2 3 24 24 H 1.08995 * 109.46764 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.46971 * 240.00474 * 2 1 3 26 26 H 1.09004 * 109.47029 * 184.68601 * 3 2 1 27 27 H 1.09002 * 109.47062 * 304.68345 * 3 2 1 28 28 H 1.08997 * 109.47182 * 64.68106 * 3 2 1 29 29 H 0.96994 * 119.99223 * 180.02562 * 8 7 5 30 30 H 1.08992 * 109.46978 * 143.22431 * 13 4 2 31 31 H 1.08997 * 109.46698 * 23.21704 * 13 4 2 32 32 H 1.09000 * 110.50965 * 98.54809 * 16 14 13 33 33 H 1.08995 * 110.51318 * 335.83194 * 16 14 13 34 34 H 1.08998 * 110.51448 * 118.64663 * 17 16 14 35 35 H 1.09003 * 110.50894 * 241.35773 * 17 16 14 36 36 H 1.09001 * 109.47036 * 59.99756 * 20 18 17 37 37 H 1.08991 * 109.47436 * 179.97438 * 20 18 17 38 38 H 1.09001 * 109.46480 * 300.00276 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0184 -0.6905 1.1961 5 6 3.3626 -0.8795 1.3768 6 1 3.7302 -1.2903 2.3055 7 6 4.2529 -0.5429 0.3663 8 7 3.8884 -0.6490 -0.8941 9 14 5.9678 0.0606 0.7950 10 1 6.9164 -1.0816 0.7654 11 1 6.3941 1.0837 -0.1932 12 1 5.9565 0.6594 2.1540 13 6 1.0687 -1.1791 2.1990 14 6 0.9508 -0.1560 3.3305 15 1 1.9384 0.1099 3.7074 16 6 0.0724 -0.7152 4.4716 17 6 -0.7233 0.5124 4.9690 18 6 -0.2310 1.6681 4.0700 19 1 0.5740 2.2147 4.5614 20 6 -1.3875 2.6122 3.7352 21 8 0.2543 1.0231 2.8725 22 1 -0.3633 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 3.1268 1.4437 -0.0840 27 1 1.6097 1.9800 -0.8451 28 1 1.7468 1.9316 0.9289 29 1 4.5106 -0.4142 -1.6001 30 1 1.4223 -2.1278 2.6024 31 1 0.0926 -1.3223 1.7356 32 1 0.6950 -1.1164 5.2713 33 1 -0.6044 -1.4809 4.0925 34 1 -1.7934 0.3535 4.8358 35 1 -0.4940 0.7180 6.0146 36 1 -1.7956 3.0279 4.6565 37 1 -1.0243 3.4213 3.1016 38 1 -2.1665 2.0602 3.2093 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299997222.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:42 Heat of formation + Delta-G solvation = -26.173416 kcal Electronic energy + Delta-G solvation = -17317.434489 eV Core-core repulsion = 14774.730317 eV Total energy + Delta-G solvation = -2542.704171 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -39.11061 -36.36184 -32.21444 -31.74387 -31.43328 -29.84684 -27.09049 -25.71281 -23.92613 -22.45383 -20.96206 -20.28716 -18.88049 -16.61071 -16.07097 -15.23115 -14.75030 -14.55943 -13.73838 -13.55010 -13.44557 -12.99137 -12.49833 -12.15849 -11.88112 -11.64948 -11.39589 -11.23810 -11.08359 -10.96069 -10.81302 -10.62224 -10.57194 -10.35692 -10.20671 -10.01464 -9.56140 -9.47832 -9.29123 -9.00467 -8.29087 -6.69772 -5.59160 -2.93983 3.44969 3.54414 3.58258 4.33662 4.61756 4.96253 4.97352 5.23114 5.29920 5.48928 5.51845 5.67030 5.71956 5.83784 5.93422 6.01961 6.09968 6.24069 6.26927 6.34080 6.42253 6.49024 6.54768 6.61459 6.66787 6.92615 7.03323 7.15152 7.22284 7.31116 7.57494 7.77217 7.98412 8.12717 8.51424 9.34537 10.03952 10.48854 11.35729 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.031054 B = 0.009054 C = 0.008459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.443921 B = 3091.869877 C = 3309.315016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.177 3.823 3 C -0.140 4.140 4 N -0.585 5.585 5 C -0.251 4.251 6 H 0.070 0.930 7 C 0.005 3.995 8 N -0.884 5.884 9 Si 0.876 3.124 10 H -0.292 1.292 11 H -0.290 1.290 12 H -0.282 1.282 13 C 0.150 3.850 14 C 0.057 3.943 15 H 0.064 0.936 16 C -0.152 4.152 17 C -0.149 4.149 18 C 0.064 3.936 19 H 0.058 0.942 20 C -0.142 4.142 21 O -0.348 6.348 22 H 0.066 0.934 23 H 0.038 0.962 24 H 0.038 0.962 25 H 0.095 0.905 26 H 0.058 0.942 27 H 0.018 0.982 28 H 0.035 0.965 29 H 0.250 0.750 30 H 0.051 0.949 31 H 0.058 0.942 32 H 0.067 0.933 33 H 0.070 0.930 34 H 0.069 0.931 35 H 0.066 0.934 36 H 0.061 0.939 37 H 0.059 0.941 38 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.458 2.813 8.641 13.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.071 3.929 3 C -0.200 4.200 4 N -0.306 5.306 5 C -0.380 4.380 6 H 0.088 0.912 7 C -0.193 4.193 8 N -0.529 5.529 9 Si 0.706 3.294 10 H -0.219 1.219 11 H -0.216 1.216 12 H -0.208 1.208 13 C 0.022 3.978 14 C -0.003 4.003 15 H 0.082 0.918 16 C -0.190 4.190 17 C -0.186 4.186 18 C 0.005 3.995 19 H 0.076 0.924 20 C -0.200 4.200 21 O -0.268 6.268 22 H 0.085 0.915 23 H 0.057 0.943 24 H 0.057 0.943 25 H 0.112 0.888 26 H 0.077 0.923 27 H 0.037 0.963 28 H 0.054 0.946 29 H 0.061 0.939 30 H 0.070 0.930 31 H 0.076 0.924 32 H 0.086 0.914 33 H 0.089 0.911 34 H 0.088 0.912 35 H 0.084 0.916 36 H 0.080 0.920 37 H 0.079 0.921 38 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -9.397 2.898 8.227 12.821 hybrid contribution 1.085 0.459 0.568 1.308 sum -8.312 3.357 8.795 12.559 Atomic orbital electron populations 1.22310 0.99199 0.99650 1.00949 1.20556 0.88652 0.92012 0.91640 1.22081 1.02128 0.98070 0.97683 1.44106 1.02186 1.64379 1.19921 1.19055 0.81782 1.38175 0.98998 0.91163 1.24471 0.97113 1.03090 0.94643 1.70122 1.35165 1.49397 0.98264 0.86651 0.85762 0.79144 0.77843 1.21932 1.21623 1.20833 1.20911 0.94596 0.93026 0.89265 1.23977 0.94150 0.87075 0.95134 0.91795 1.22987 0.99073 0.97991 0.98964 1.22963 1.00507 0.95735 0.99444 1.22886 0.95514 0.93787 0.87291 0.92380 1.21755 0.97611 0.99191 1.01408 1.89217 1.72627 1.38567 1.26345 0.91544 0.94329 0.94330 0.88827 0.92276 0.96256 0.94599 0.93917 0.93042 0.92407 0.91401 0.91121 0.91249 0.91552 0.92030 0.92142 0.92058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.40 7.85 37.16 0.29 -3.11 16 2 C 0.18 4.36 2.88 -67.93 -0.20 4.16 16 3 C -0.14 -3.45 8.89 37.16 0.33 -3.12 16 4 N -0.59 -14.67 2.69 -165.66 -0.45 -15.11 16 5 C -0.25 -6.91 9.38 -15.06 -0.14 -7.05 16 6 H 0.07 1.90 8.00 -52.49 -0.42 1.48 16 7 C 0.00 0.14 3.42 -17.43 -0.06 0.08 16 8 N -0.88 -25.56 9.98 55.49 0.55 -25.01 16 9 Si 0.88 22.02 29.66 -169.99 -5.04 16.98 16 10 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 11 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 12 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 13 C 0.15 3.12 4.82 -4.04 -0.02 3.10 16 14 C 0.06 1.06 3.48 -25.95 -0.09 0.97 16 15 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 16 C -0.15 -2.17 6.63 -25.16 -0.17 -2.34 16 17 C -0.15 -1.89 6.63 -25.16 -0.17 -2.05 16 18 C 0.06 0.94 3.92 -25.96 -0.10 0.84 16 19 H 0.06 0.86 8.14 -51.92 -0.42 0.44 16 20 C -0.14 -1.76 9.52 37.16 0.35 -1.41 16 21 O -0.35 -6.56 8.38 -35.23 -0.30 -6.86 16 22 H 0.07 1.36 5.29 -51.93 -0.27 1.09 16 23 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 24 H 0.04 0.77 7.12 -51.93 -0.37 0.40 16 25 H 0.09 2.64 5.90 -51.93 -0.31 2.33 16 26 H 0.06 1.59 5.74 -51.93 -0.30 1.29 16 27 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.03 0.86 7.69 -51.93 -0.40 0.47 16 29 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 30 H 0.05 1.04 8.09 -51.93 -0.42 0.62 16 31 H 0.06 1.15 5.42 -51.93 -0.28 0.87 16 32 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.07 0.96 7.87 -51.93 -0.41 0.55 16 34 H 0.07 0.81 7.87 -51.93 -0.41 0.40 16 35 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 290.03 15.07 4.37 4.37 Total: -1.00 -29.26 290.03 -7.35 -36.61 By element: Atomic # 1 Polarization: 5.49 SS G_CDS: -6.53 Total: -1.04 kcal Atomic # 6 Polarization: -9.98 SS G_CDS: 0.03 Total: -9.94 kcal Atomic # 7 Polarization: -40.23 SS G_CDS: 0.11 Total: -40.12 kcal Atomic # 8 Polarization: -6.56 SS G_CDS: -0.30 Total: -6.86 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.04 Total: 16.98 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -29.26 -7.35 -36.61 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299997222.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.433 kcal (2) G-P(sol) polarization free energy of solvation -29.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds