Wall clock time and date at job start Mon Mar 30 2020 02:55:42
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53003 * 1
3 3 C 1.53006 * 109.46922 * 2 1
4 4 N 1.46493 * 109.47517 * 119.99770 * 2 1 3
5 5 C 1.36937 * 120.00370 * 176.45505 * 4 2 1
6 6 H 1.07996 * 120.00240 * 173.31012 * 5 4 2
7 7 C 1.38816 * 120.00054 * 353.31656 * 5 4 2
8 8 N 1.31627 * 119.99491 * 328.13078 * 7 5 4
9 9 Si 1.86794 * 120.00371 * 148.12600 * 7 5 4
10 10 H 1.48505 * 109.46966 * 94.98958 * 9 7 5
11 11 H 1.48495 * 109.47325 * 214.98941 * 9 7 5
12 12 H 1.48502 * 109.46879 * 334.99404 * 9 7 5
13 13 C 1.46509 * 119.99881 * 356.46156 * 4 2 1
14 14 C 1.53002 * 109.46522 * 263.22421 * 13 4 2
15 15 H 1.09000 * 110.42405 * 308.35396 * 14 13 4
16 16 C 1.54482 * 110.36669 * 186.04681 * 14 13 4
17 17 C 1.54514 * 104.06168 * 217.19129 * 16 14 13
18 18 C 1.54477 * 104.06177 * 359.97438 * 17 16 14
19 19 H 1.09008 * 110.37428 * 265.03947 * 18 17 16
20 20 C 1.53001 * 110.37407 * 142.81420 * 18 17 16
21 21 O 1.44420 * 104.80378 * 23.97990 * 18 17 16
22 22 H 1.08993 * 109.46833 * 299.99887 * 1 2 3
23 23 H 1.09000 * 109.47001 * 60.00049 * 1 2 3
24 24 H 1.08995 * 109.46764 * 180.02562 * 1 2 3
25 25 H 1.09000 * 109.46971 * 240.00474 * 2 1 3
26 26 H 1.09004 * 109.47029 * 184.68601 * 3 2 1
27 27 H 1.09002 * 109.47062 * 304.68345 * 3 2 1
28 28 H 1.08997 * 109.47182 * 64.68106 * 3 2 1
29 29 H 0.96994 * 119.99223 * 180.02562 * 8 7 5
30 30 H 1.08992 * 109.46978 * 143.22431 * 13 4 2
31 31 H 1.08997 * 109.46698 * 23.21704 * 13 4 2
32 32 H 1.09000 * 110.50965 * 98.54809 * 16 14 13
33 33 H 1.08995 * 110.51318 * 335.83194 * 16 14 13
34 34 H 1.08998 * 110.51448 * 118.64663 * 17 16 14
35 35 H 1.09003 * 110.50894 * 241.35773 * 17 16 14
36 36 H 1.09001 * 109.47036 * 59.99756 * 20 18 17
37 37 H 1.08991 * 109.47436 * 179.97438 * 20 18 17
38 38 H 1.09001 * 109.46480 * 300.00276 * 20 18 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4426 0.0000
4 7 2.0184 -0.6905 1.1961
5 6 3.3626 -0.8795 1.3768
6 1 3.7302 -1.2903 2.3055
7 6 4.2529 -0.5429 0.3663
8 7 3.8884 -0.6490 -0.8941
9 14 5.9678 0.0606 0.7950
10 1 6.9164 -1.0816 0.7654
11 1 6.3941 1.0837 -0.1932
12 1 5.9565 0.6594 2.1540
13 6 1.0687 -1.1791 2.1990
14 6 0.9508 -0.1560 3.3305
15 1 1.9384 0.1099 3.7074
16 6 0.0724 -0.7152 4.4716
17 6 -0.7233 0.5124 4.9690
18 6 -0.2310 1.6681 4.0700
19 1 0.5740 2.2147 4.5614
20 6 -1.3875 2.6122 3.7352
21 8 0.2543 1.0231 2.8725
22 1 -0.3633 0.5138 0.8899
23 1 -0.3633 0.5138 -0.8900
24 1 -0.3633 -1.0276 0.0005
25 1 1.8933 -0.5138 -0.8900
26 1 3.1268 1.4437 -0.0840
27 1 1.6097 1.9800 -0.8451
28 1 1.7468 1.9316 0.9289
29 1 4.5106 -0.4142 -1.6001
30 1 1.4223 -2.1278 2.6024
31 1 0.0926 -1.3223 1.7356
32 1 0.6950 -1.1164 5.2713
33 1 -0.6044 -1.4809 4.0925
34 1 -1.7934 0.3535 4.8358
35 1 -0.4940 0.7180 6.0146
36 1 -1.7956 3.0279 4.6565
37 1 -1.0243 3.4213 3.1016
38 1 -2.1665 2.0602 3.2093
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000299997222.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:55:42
Heat of formation + Delta-G solvation = -26.173416 kcal
Electronic energy + Delta-G solvation = -17317.434489 eV
Core-core repulsion = 14774.730317 eV
Total energy + Delta-G solvation = -2542.704171 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 227.163 amu
Computer time = 1.35 seconds
Orbital eigenvalues (eV)
-39.11061 -36.36184 -32.21444 -31.74387 -31.43328 -29.84684 -27.09049 -25.71281
-23.92613 -22.45383 -20.96206 -20.28716 -18.88049 -16.61071 -16.07097 -15.23115
-14.75030 -14.55943 -13.73838 -13.55010 -13.44557 -12.99137 -12.49833 -12.15849
-11.88112 -11.64948 -11.39589 -11.23810 -11.08359 -10.96069 -10.81302 -10.62224
-10.57194 -10.35692 -10.20671 -10.01464 -9.56140 -9.47832 -9.29123 -9.00467
-8.29087 -6.69772 -5.59160 -2.93983 3.44969 3.54414 3.58258 4.33662
4.61756 4.96253 4.97352 5.23114 5.29920 5.48928 5.51845 5.67030
5.71956 5.83784 5.93422 6.01961 6.09968 6.24069 6.26927 6.34080
6.42253 6.49024 6.54768 6.61459 6.66787 6.92615 7.03323 7.15152
7.22284 7.31116 7.57494 7.77217 7.98412 8.12717 8.51424 9.34537
10.03952 10.48854 11.35729
Molecular weight = 227.16amu
Principal moments of inertia in cm(-1)
A = 0.031054 B = 0.009054 C = 0.008459
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 901.443921 B = 3091.869877 C = 3309.315016
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.164 4.164
2 C 0.177 3.823
3 C -0.140 4.140
4 N -0.585 5.585
5 C -0.251 4.251
6 H 0.070 0.930
7 C 0.005 3.995
8 N -0.884 5.884
9 Si 0.876 3.124
10 H -0.292 1.292
11 H -0.290 1.290
12 H -0.282 1.282
13 C 0.150 3.850
14 C 0.057 3.943
15 H 0.064 0.936
16 C -0.152 4.152
17 C -0.149 4.149
18 C 0.064 3.936
19 H 0.058 0.942
20 C -0.142 4.142
21 O -0.348 6.348
22 H 0.066 0.934
23 H 0.038 0.962
24 H 0.038 0.962
25 H 0.095 0.905
26 H 0.058 0.942
27 H 0.018 0.982
28 H 0.035 0.965
29 H 0.250 0.750
30 H 0.051 0.949
31 H 0.058 0.942
32 H 0.067 0.933
33 H 0.070 0.930
34 H 0.069 0.931
35 H 0.066 0.934
36 H 0.061 0.939
37 H 0.059 0.941
38 H 0.060 0.940
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -9.458 2.813 8.641 13.116
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.221 4.221
2 C 0.071 3.929
3 C -0.200 4.200
4 N -0.306 5.306
5 C -0.380 4.380
6 H 0.088 0.912
7 C -0.193 4.193
8 N -0.529 5.529
9 Si 0.706 3.294
10 H -0.219 1.219
11 H -0.216 1.216
12 H -0.208 1.208
13 C 0.022 3.978
14 C -0.003 4.003
15 H 0.082 0.918
16 C -0.190 4.190
17 C -0.186 4.186
18 C 0.005 3.995
19 H 0.076 0.924
20 C -0.200 4.200
21 O -0.268 6.268
22 H 0.085 0.915
23 H 0.057 0.943
24 H 0.057 0.943
25 H 0.112 0.888
26 H 0.077 0.923
27 H 0.037 0.963
28 H 0.054 0.946
29 H 0.061 0.939
30 H 0.070 0.930
31 H 0.076 0.924
32 H 0.086 0.914
33 H 0.089 0.911
34 H 0.088 0.912
35 H 0.084 0.916
36 H 0.080 0.920
37 H 0.079 0.921
38 H 0.079 0.921
Dipole moment (debyes) X Y Z Total
from point charges -9.397 2.898 8.227 12.821
hybrid contribution 1.085 0.459 0.568 1.308
sum -8.312 3.357 8.795 12.559
Atomic orbital electron populations
1.22310 0.99199 0.99650 1.00949 1.20556 0.88652 0.92012 0.91640
1.22081 1.02128 0.98070 0.97683 1.44106 1.02186 1.64379 1.19921
1.19055 0.81782 1.38175 0.98998 0.91163 1.24471 0.97113 1.03090
0.94643 1.70122 1.35165 1.49397 0.98264 0.86651 0.85762 0.79144
0.77843 1.21932 1.21623 1.20833 1.20911 0.94596 0.93026 0.89265
1.23977 0.94150 0.87075 0.95134 0.91795 1.22987 0.99073 0.97991
0.98964 1.22963 1.00507 0.95735 0.99444 1.22886 0.95514 0.93787
0.87291 0.92380 1.21755 0.97611 0.99191 1.01408 1.89217 1.72627
1.38567 1.26345 0.91544 0.94329 0.94330 0.88827 0.92276 0.96256
0.94599 0.93917 0.93042 0.92407 0.91401 0.91121 0.91249 0.91552
0.92030 0.92142 0.92058
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 21.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -3.40 7.85 37.16 0.29 -3.11 16
2 C 0.18 4.36 2.88 -67.93 -0.20 4.16 16
3 C -0.14 -3.45 8.89 37.16 0.33 -3.12 16
4 N -0.59 -14.67 2.69 -165.66 -0.45 -15.11 16
5 C -0.25 -6.91 9.38 -15.06 -0.14 -7.05 16
6 H 0.07 1.90 8.00 -52.49 -0.42 1.48 16
7 C 0.00 0.14 3.42 -17.43 -0.06 0.08 16
8 N -0.88 -25.56 9.98 55.49 0.55 -25.01 16
9 Si 0.88 22.02 29.66 -169.99 -5.04 16.98 16
10 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16
11 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16
12 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16
13 C 0.15 3.12 4.82 -4.04 -0.02 3.10 16
14 C 0.06 1.06 3.48 -25.95 -0.09 0.97 16
15 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16
16 C -0.15 -2.17 6.63 -25.16 -0.17 -2.34 16
17 C -0.15 -1.89 6.63 -25.16 -0.17 -2.05 16
18 C 0.06 0.94 3.92 -25.96 -0.10 0.84 16
19 H 0.06 0.86 8.14 -51.92 -0.42 0.44 16
20 C -0.14 -1.76 9.52 37.16 0.35 -1.41 16
21 O -0.35 -6.56 8.38 -35.23 -0.30 -6.86 16
22 H 0.07 1.36 5.29 -51.93 -0.27 1.09 16
23 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16
24 H 0.04 0.77 7.12 -51.93 -0.37 0.40 16
25 H 0.09 2.64 5.90 -51.93 -0.31 2.33 16
26 H 0.06 1.59 5.74 -51.93 -0.30 1.29 16
27 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16
28 H 0.03 0.86 7.69 -51.93 -0.40 0.47 16
29 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16
30 H 0.05 1.04 8.09 -51.93 -0.42 0.62 16
31 H 0.06 1.15 5.42 -51.93 -0.28 0.87 16
32 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16
33 H 0.07 0.96 7.87 -51.93 -0.41 0.55 16
34 H 0.07 0.81 7.87 -51.93 -0.41 0.40 16
35 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16
36 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16
37 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16
38 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16
LS Contribution 290.03 15.07 4.37 4.37
Total: -1.00 -29.26 290.03 -7.35 -36.61
By element:
Atomic # 1 Polarization: 5.49 SS G_CDS: -6.53 Total: -1.04 kcal
Atomic # 6 Polarization: -9.98 SS G_CDS: 0.03 Total: -9.94 kcal
Atomic # 7 Polarization: -40.23 SS G_CDS: 0.11 Total: -40.12 kcal
Atomic # 8 Polarization: -6.56 SS G_CDS: -0.30 Total: -6.86 kcal
Atomic # 14 Polarization: 22.02 SS G_CDS: -5.04 Total: 16.98 kcal
Total LS contribution 4.37 Total: 4.37 kcal
Total: -29.26 -7.35 -36.61 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000299997222.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 10.433 kcal
(2) G-P(sol) polarization free energy of solvation -29.257 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.824 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.349 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.607 kcal
(6) G-S(sol) free energy of system = (1) + (5) -26.173 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.35 seconds