Wall clock time and date at job start Mon Mar 30 2020 02:55:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53006 * 109.46922 * 2 1 4 4 N 1.46493 * 109.47517 * 119.99770 * 2 1 3 5 5 C 1.36937 * 120.00370 * 176.45505 * 4 2 1 6 6 H 1.07996 * 120.00240 * 173.31012 * 5 4 2 7 7 C 1.38816 * 120.00054 * 353.31656 * 5 4 2 8 8 N 1.31627 * 119.99491 * 328.13078 * 7 5 4 9 9 Si 1.86794 * 120.00371 * 148.12600 * 7 5 4 10 10 H 1.48505 * 109.46966 * 94.98958 * 9 7 5 11 11 H 1.48495 * 109.47325 * 214.98941 * 9 7 5 12 12 H 1.48502 * 109.46879 * 334.99404 * 9 7 5 13 13 C 1.46509 * 119.99881 * 356.46156 * 4 2 1 14 14 C 1.53002 * 109.46522 * 263.22421 * 13 4 2 15 15 H 1.09000 * 110.42405 * 308.35396 * 14 13 4 16 16 C 1.54482 * 110.36669 * 186.04681 * 14 13 4 17 17 C 1.54514 * 104.06168 * 217.19129 * 16 14 13 18 18 C 1.54477 * 104.06177 * 359.97438 * 17 16 14 19 19 H 1.09008 * 110.37428 * 265.03947 * 18 17 16 20 20 C 1.53001 * 110.37407 * 142.81420 * 18 17 16 21 21 O 1.44420 * 104.80378 * 23.97990 * 18 17 16 22 22 H 1.08993 * 109.46833 * 299.99887 * 1 2 3 23 23 H 1.09000 * 109.47001 * 60.00049 * 1 2 3 24 24 H 1.08995 * 109.46764 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.46971 * 240.00474 * 2 1 3 26 26 H 1.09004 * 109.47029 * 184.68601 * 3 2 1 27 27 H 1.09002 * 109.47062 * 304.68345 * 3 2 1 28 28 H 1.08997 * 109.47182 * 64.68106 * 3 2 1 29 29 H 0.96994 * 119.99223 * 180.02562 * 8 7 5 30 30 H 1.08992 * 109.46978 * 143.22431 * 13 4 2 31 31 H 1.08997 * 109.46698 * 23.21704 * 13 4 2 32 32 H 1.09000 * 110.50965 * 98.54809 * 16 14 13 33 33 H 1.08995 * 110.51318 * 335.83194 * 16 14 13 34 34 H 1.08998 * 110.51448 * 118.64663 * 17 16 14 35 35 H 1.09003 * 110.50894 * 241.35773 * 17 16 14 36 36 H 1.09001 * 109.47036 * 59.99756 * 20 18 17 37 37 H 1.08991 * 109.47436 * 179.97438 * 20 18 17 38 38 H 1.09001 * 109.46480 * 300.00276 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0184 -0.6905 1.1961 5 6 3.3626 -0.8795 1.3768 6 1 3.7302 -1.2903 2.3055 7 6 4.2529 -0.5429 0.3663 8 7 3.8884 -0.6490 -0.8941 9 14 5.9678 0.0606 0.7950 10 1 6.9164 -1.0816 0.7654 11 1 6.3941 1.0837 -0.1932 12 1 5.9565 0.6594 2.1540 13 6 1.0687 -1.1791 2.1990 14 6 0.9508 -0.1560 3.3305 15 1 1.9384 0.1099 3.7074 16 6 0.0724 -0.7152 4.4716 17 6 -0.7233 0.5124 4.9690 18 6 -0.2310 1.6681 4.0700 19 1 0.5740 2.2147 4.5614 20 6 -1.3875 2.6122 3.7352 21 8 0.2543 1.0231 2.8725 22 1 -0.3633 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 3.1268 1.4437 -0.0840 27 1 1.6097 1.9800 -0.8451 28 1 1.7468 1.9316 0.9289 29 1 4.5106 -0.4142 -1.6001 30 1 1.4223 -2.1278 2.6024 31 1 0.0926 -1.3223 1.7356 32 1 0.6950 -1.1164 5.2713 33 1 -0.6044 -1.4809 4.0925 34 1 -1.7934 0.3535 4.8358 35 1 -0.4940 0.7180 6.0146 36 1 -1.7956 3.0279 4.6565 37 1 -1.0243 3.4213 3.1016 38 1 -2.1665 2.0602 3.2093 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299997222.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:41 Heat of formation + Delta-G solvation = -42.864114 kcal Electronic energy + Delta-G solvation = -17318.158252 eV Core-core repulsion = 14774.730317 eV Total energy + Delta-G solvation = -2543.427934 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.43876 -38.20096 -33.89240 -33.26036 -32.96278 -31.43916 -28.74971 -27.42654 -25.71307 -23.99192 -22.28152 -21.54180 -20.80455 -18.57279 -17.35466 -16.69678 -16.52813 -16.12565 -15.59542 -15.35748 -14.62978 -14.52381 -13.86639 -13.71851 -13.43017 -13.09441 -12.93726 -12.88304 -12.78403 -12.63131 -12.44974 -12.38522 -12.17816 -11.88901 -11.58864 -11.48342 -11.36894 -11.34438 -11.16855 -10.43282 -10.36871 -8.74314 -7.69214 -5.06049 1.42253 1.47815 1.55574 2.55711 3.11364 3.26880 3.66325 3.86800 3.94378 4.14029 4.30339 4.44487 4.51203 4.63328 4.65809 4.73531 4.77151 4.86035 4.94209 4.98816 5.00066 5.10174 5.14270 5.18798 5.21667 5.26101 5.34173 5.35888 5.39606 5.49664 5.66341 5.94026 6.09846 6.27368 6.44716 7.25521 8.03956 8.43699 9.22502 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.031054 B = 0.009054 C = 0.008459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.443921 B = 3091.869877 C = 3309.315016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.175 3.825 3 C -0.127 4.127 4 N -0.599 5.599 5 C -0.256 4.256 6 H 0.068 0.932 7 C -0.038 4.038 8 N -0.909 5.909 9 Si 0.929 3.071 10 H -0.289 1.289 11 H -0.296 1.296 12 H -0.281 1.281 13 C 0.146 3.854 14 C 0.062 3.938 15 H 0.034 0.966 16 C -0.144 4.144 17 C -0.138 4.138 18 C 0.051 3.949 19 H 0.052 0.948 20 C -0.137 4.137 21 O -0.375 6.375 22 H 0.071 0.929 23 H 0.053 0.947 24 H 0.045 0.955 25 H 0.058 0.942 26 H 0.028 0.972 27 H 0.034 0.966 28 H 0.032 0.968 29 H 0.245 0.755 30 H 0.052 0.948 31 H 0.069 0.931 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.086 0.914 35 H 0.087 0.913 36 H 0.090 0.910 37 H 0.049 0.951 38 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.082 3.105 10.270 15.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.069 3.931 3 C -0.186 4.186 4 N -0.320 5.320 5 C -0.386 4.386 6 H 0.086 0.914 7 C -0.234 4.234 8 N -0.556 5.556 9 Si 0.758 3.242 10 H -0.216 1.216 11 H -0.222 1.222 12 H -0.207 1.207 13 C 0.020 3.980 14 C 0.002 3.998 15 H 0.052 0.948 16 C -0.183 4.183 17 C -0.176 4.176 18 C -0.007 4.007 19 H 0.070 0.930 20 C -0.194 4.194 21 O -0.295 6.295 22 H 0.090 0.910 23 H 0.072 0.928 24 H 0.064 0.936 25 H 0.076 0.924 26 H 0.047 0.953 27 H 0.053 0.947 28 H 0.051 0.949 29 H 0.055 0.945 30 H 0.070 0.930 31 H 0.087 0.913 32 H 0.099 0.901 33 H 0.099 0.901 34 H 0.105 0.895 35 H 0.106 0.894 36 H 0.109 0.891 37 H 0.068 0.932 38 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -11.039 3.187 9.894 15.163 hybrid contribution 1.557 0.368 0.093 1.603 sum -9.482 3.555 9.987 14.222 Atomic orbital electron populations 1.22136 0.96088 1.00446 1.01963 1.20416 0.91072 0.91302 0.90306 1.21921 1.00127 0.98512 0.98066 1.44307 1.02106 1.64609 1.20998 1.19298 0.83361 1.37420 0.98549 0.91427 1.24999 0.99838 1.03918 0.94685 1.70257 1.35880 1.50725 0.98728 0.85824 0.82705 0.78397 0.77230 1.21587 1.22208 1.20675 1.21090 0.94052 0.93712 0.89177 1.23642 0.93971 0.86864 0.95341 0.94771 1.22932 0.98818 0.98907 0.97623 1.22935 1.01084 0.93544 1.00016 1.23169 0.96184 0.94815 0.86483 0.93024 1.21747 0.96609 0.98329 1.02703 1.89171 1.72702 1.38882 1.28723 0.90985 0.92790 0.93612 0.92435 0.95257 0.94734 0.94862 0.94501 0.92967 0.91324 0.90148 0.90051 0.89546 0.89408 0.89149 0.93176 0.91948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.99 7.85 71.98 0.57 -5.42 16 2 C 0.17 8.64 2.88 45.00 0.13 8.77 16 3 C -0.13 -6.27 8.89 71.98 0.64 -5.64 16 4 N -0.60 -30.18 2.69 -678.02 -1.82 -32.00 16 5 C -0.26 -14.29 9.38 84.03 0.79 -13.50 16 6 H 0.07 3.71 8.00 -2.91 -0.02 3.68 16 7 C -0.04 -2.19 3.42 84.86 0.29 -1.90 16 8 N -0.91 -53.79 9.98 21.65 0.22 -53.57 16 9 Si 0.93 46.15 29.66 68.60 2.03 48.19 16 10 H -0.29 -14.07 7.11 99.48 0.71 -13.36 16 11 H -0.30 -14.83 7.11 99.48 0.71 -14.12 16 12 H -0.28 -13.74 7.11 99.48 0.71 -13.03 16 13 C 0.15 5.95 4.82 86.38 0.42 6.37 16 14 C 0.06 2.24 3.48 31.10 0.11 2.35 16 15 H 0.03 1.42 8.14 -2.39 -0.02 1.40 16 16 C -0.14 -3.73 6.63 31.61 0.21 -3.52 16 17 C -0.14 -3.00 6.63 31.61 0.21 -2.79 16 18 C 0.05 1.39 3.92 31.10 0.12 1.51 16 19 H 0.05 1.45 8.14 -2.38 -0.02 1.43 16 20 C -0.14 -3.00 9.52 71.98 0.69 -2.32 16 21 O -0.37 -13.62 8.38 -148.98 -1.25 -14.87 16 22 H 0.07 2.83 5.29 -2.39 -0.01 2.81 16 23 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 24 H 0.04 1.74 7.12 -2.39 -0.02 1.73 16 25 H 0.06 3.32 5.90 -2.39 -0.01 3.31 16 26 H 0.03 1.59 5.74 -2.38 -0.01 1.57 16 27 H 0.03 1.53 8.14 -2.39 -0.02 1.51 16 28 H 0.03 1.60 7.69 -2.39 -0.02 1.59 16 29 H 0.25 14.19 8.31 -92.71 -0.77 13.42 16 30 H 0.05 2.08 8.09 -2.39 -0.02 2.07 16 31 H 0.07 2.63 5.42 -2.39 -0.01 2.62 16 32 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 33 H 0.08 1.95 7.87 -2.39 -0.02 1.93 16 34 H 0.09 1.62 7.87 -2.39 -0.02 1.60 16 35 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 36 H 0.09 1.45 8.14 -2.39 -0.02 1.44 16 37 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 38 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 Total: -1.00 -63.24 290.03 4.35 -58.89 By element: Atomic # 1 Polarization: 8.44 SS G_CDS: 1.01 Total: 9.45 kcal Atomic # 6 Polarization: -20.25 SS G_CDS: 4.16 Total: -16.08 kcal Atomic # 7 Polarization: -83.96 SS G_CDS: -1.61 Total: -85.57 kcal Atomic # 8 Polarization: -13.62 SS G_CDS: -1.25 Total: -14.87 kcal Atomic # 14 Polarization: 46.15 SS G_CDS: 2.03 Total: 48.19 kcal Total: -63.24 4.35 -58.89 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299997222.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.028 kcal (2) G-P(sol) polarization free energy of solvation -63.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds