Wall clock time and date at job start Mon Mar 30 2020 02:55:41
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53003 * 1
3 3 C 1.53006 * 109.46922 * 2 1
4 4 N 1.46493 * 109.47517 * 119.99770 * 2 1 3
5 5 C 1.36937 * 120.00370 * 176.45505 * 4 2 1
6 6 H 1.07996 * 120.00240 * 173.31012 * 5 4 2
7 7 C 1.38816 * 120.00054 * 353.31656 * 5 4 2
8 8 N 1.31627 * 119.99491 * 328.13078 * 7 5 4
9 9 Si 1.86794 * 120.00371 * 148.12600 * 7 5 4
10 10 H 1.48505 * 109.46966 * 94.98958 * 9 7 5
11 11 H 1.48495 * 109.47325 * 214.98941 * 9 7 5
12 12 H 1.48502 * 109.46879 * 334.99404 * 9 7 5
13 13 C 1.46509 * 119.99881 * 356.46156 * 4 2 1
14 14 C 1.53002 * 109.46522 * 263.22421 * 13 4 2
15 15 H 1.09000 * 110.42405 * 308.35396 * 14 13 4
16 16 C 1.54482 * 110.36669 * 186.04681 * 14 13 4
17 17 C 1.54514 * 104.06168 * 217.19129 * 16 14 13
18 18 C 1.54477 * 104.06177 * 359.97438 * 17 16 14
19 19 H 1.09008 * 110.37428 * 265.03947 * 18 17 16
20 20 C 1.53001 * 110.37407 * 142.81420 * 18 17 16
21 21 O 1.44420 * 104.80378 * 23.97990 * 18 17 16
22 22 H 1.08993 * 109.46833 * 299.99887 * 1 2 3
23 23 H 1.09000 * 109.47001 * 60.00049 * 1 2 3
24 24 H 1.08995 * 109.46764 * 180.02562 * 1 2 3
25 25 H 1.09000 * 109.46971 * 240.00474 * 2 1 3
26 26 H 1.09004 * 109.47029 * 184.68601 * 3 2 1
27 27 H 1.09002 * 109.47062 * 304.68345 * 3 2 1
28 28 H 1.08997 * 109.47182 * 64.68106 * 3 2 1
29 29 H 0.96994 * 119.99223 * 180.02562 * 8 7 5
30 30 H 1.08992 * 109.46978 * 143.22431 * 13 4 2
31 31 H 1.08997 * 109.46698 * 23.21704 * 13 4 2
32 32 H 1.09000 * 110.50965 * 98.54809 * 16 14 13
33 33 H 1.08995 * 110.51318 * 335.83194 * 16 14 13
34 34 H 1.08998 * 110.51448 * 118.64663 * 17 16 14
35 35 H 1.09003 * 110.50894 * 241.35773 * 17 16 14
36 36 H 1.09001 * 109.47036 * 59.99756 * 20 18 17
37 37 H 1.08991 * 109.47436 * 179.97438 * 20 18 17
38 38 H 1.09001 * 109.46480 * 300.00276 * 20 18 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4426 0.0000
4 7 2.0184 -0.6905 1.1961
5 6 3.3626 -0.8795 1.3768
6 1 3.7302 -1.2903 2.3055
7 6 4.2529 -0.5429 0.3663
8 7 3.8884 -0.6490 -0.8941
9 14 5.9678 0.0606 0.7950
10 1 6.9164 -1.0816 0.7654
11 1 6.3941 1.0837 -0.1932
12 1 5.9565 0.6594 2.1540
13 6 1.0687 -1.1791 2.1990
14 6 0.9508 -0.1560 3.3305
15 1 1.9384 0.1099 3.7074
16 6 0.0724 -0.7152 4.4716
17 6 -0.7233 0.5124 4.9690
18 6 -0.2310 1.6681 4.0700
19 1 0.5740 2.2147 4.5614
20 6 -1.3875 2.6122 3.7352
21 8 0.2543 1.0231 2.8725
22 1 -0.3633 0.5138 0.8899
23 1 -0.3633 0.5138 -0.8900
24 1 -0.3633 -1.0276 0.0005
25 1 1.8933 -0.5138 -0.8900
26 1 3.1268 1.4437 -0.0840
27 1 1.6097 1.9800 -0.8451
28 1 1.7468 1.9316 0.9289
29 1 4.5106 -0.4142 -1.6001
30 1 1.4223 -2.1278 2.6024
31 1 0.0926 -1.3223 1.7356
32 1 0.6950 -1.1164 5.2713
33 1 -0.6044 -1.4809 4.0925
34 1 -1.7934 0.3535 4.8358
35 1 -0.4940 0.7180 6.0146
36 1 -1.7956 3.0279 4.6565
37 1 -1.0243 3.4213 3.1016
38 1 -2.1665 2.0602 3.2093
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000299997222.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:55:41
Heat of formation + Delta-G solvation = -42.864114 kcal
Electronic energy + Delta-G solvation = -17318.158252 eV
Core-core repulsion = 14774.730317 eV
Total energy + Delta-G solvation = -2543.427934 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 227.163 amu
Computer time = 0.45 seconds
Orbital eigenvalues (eV)
-40.43876 -38.20096 -33.89240 -33.26036 -32.96278 -31.43916 -28.74971 -27.42654
-25.71307 -23.99192 -22.28152 -21.54180 -20.80455 -18.57279 -17.35466 -16.69678
-16.52813 -16.12565 -15.59542 -15.35748 -14.62978 -14.52381 -13.86639 -13.71851
-13.43017 -13.09441 -12.93726 -12.88304 -12.78403 -12.63131 -12.44974 -12.38522
-12.17816 -11.88901 -11.58864 -11.48342 -11.36894 -11.34438 -11.16855 -10.43282
-10.36871 -8.74314 -7.69214 -5.06049 1.42253 1.47815 1.55574 2.55711
3.11364 3.26880 3.66325 3.86800 3.94378 4.14029 4.30339 4.44487
4.51203 4.63328 4.65809 4.73531 4.77151 4.86035 4.94209 4.98816
5.00066 5.10174 5.14270 5.18798 5.21667 5.26101 5.34173 5.35888
5.39606 5.49664 5.66341 5.94026 6.09846 6.27368 6.44716 7.25521
8.03956 8.43699 9.22502
Molecular weight = 227.16amu
Principal moments of inertia in cm(-1)
A = 0.031054 B = 0.009054 C = 0.008459
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 901.443921 B = 3091.869877 C = 3309.315016
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.149 4.149
2 C 0.175 3.825
3 C -0.127 4.127
4 N -0.599 5.599
5 C -0.256 4.256
6 H 0.068 0.932
7 C -0.038 4.038
8 N -0.909 5.909
9 Si 0.929 3.071
10 H -0.289 1.289
11 H -0.296 1.296
12 H -0.281 1.281
13 C 0.146 3.854
14 C 0.062 3.938
15 H 0.034 0.966
16 C -0.144 4.144
17 C -0.138 4.138
18 C 0.051 3.949
19 H 0.052 0.948
20 C -0.137 4.137
21 O -0.375 6.375
22 H 0.071 0.929
23 H 0.053 0.947
24 H 0.045 0.955
25 H 0.058 0.942
26 H 0.028 0.972
27 H 0.034 0.966
28 H 0.032 0.968
29 H 0.245 0.755
30 H 0.052 0.948
31 H 0.069 0.931
32 H 0.080 0.920
33 H 0.081 0.919
34 H 0.086 0.914
35 H 0.087 0.913
36 H 0.090 0.910
37 H 0.049 0.951
38 H 0.061 0.939
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -11.082 3.105 10.270 15.425
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.206 4.206
2 C 0.069 3.931
3 C -0.186 4.186
4 N -0.320 5.320
5 C -0.386 4.386
6 H 0.086 0.914
7 C -0.234 4.234
8 N -0.556 5.556
9 Si 0.758 3.242
10 H -0.216 1.216
11 H -0.222 1.222
12 H -0.207 1.207
13 C 0.020 3.980
14 C 0.002 3.998
15 H 0.052 0.948
16 C -0.183 4.183
17 C -0.176 4.176
18 C -0.007 4.007
19 H 0.070 0.930
20 C -0.194 4.194
21 O -0.295 6.295
22 H 0.090 0.910
23 H 0.072 0.928
24 H 0.064 0.936
25 H 0.076 0.924
26 H 0.047 0.953
27 H 0.053 0.947
28 H 0.051 0.949
29 H 0.055 0.945
30 H 0.070 0.930
31 H 0.087 0.913
32 H 0.099 0.901
33 H 0.099 0.901
34 H 0.105 0.895
35 H 0.106 0.894
36 H 0.109 0.891
37 H 0.068 0.932
38 H 0.081 0.919
Dipole moment (debyes) X Y Z Total
from point charges -11.039 3.187 9.894 15.163
hybrid contribution 1.557 0.368 0.093 1.603
sum -9.482 3.555 9.987 14.222
Atomic orbital electron populations
1.22136 0.96088 1.00446 1.01963 1.20416 0.91072 0.91302 0.90306
1.21921 1.00127 0.98512 0.98066 1.44307 1.02106 1.64609 1.20998
1.19298 0.83361 1.37420 0.98549 0.91427 1.24999 0.99838 1.03918
0.94685 1.70257 1.35880 1.50725 0.98728 0.85824 0.82705 0.78397
0.77230 1.21587 1.22208 1.20675 1.21090 0.94052 0.93712 0.89177
1.23642 0.93971 0.86864 0.95341 0.94771 1.22932 0.98818 0.98907
0.97623 1.22935 1.01084 0.93544 1.00016 1.23169 0.96184 0.94815
0.86483 0.93024 1.21747 0.96609 0.98329 1.02703 1.89171 1.72702
1.38882 1.28723 0.90985 0.92790 0.93612 0.92435 0.95257 0.94734
0.94862 0.94501 0.92967 0.91324 0.90148 0.90051 0.89546 0.89408
0.89149 0.93176 0.91948
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -5.99 7.85 71.98 0.57 -5.42 16
2 C 0.17 8.64 2.88 45.00 0.13 8.77 16
3 C -0.13 -6.27 8.89 71.98 0.64 -5.64 16
4 N -0.60 -30.18 2.69 -678.02 -1.82 -32.00 16
5 C -0.26 -14.29 9.38 84.03 0.79 -13.50 16
6 H 0.07 3.71 8.00 -2.91 -0.02 3.68 16
7 C -0.04 -2.19 3.42 84.86 0.29 -1.90 16
8 N -0.91 -53.79 9.98 21.65 0.22 -53.57 16
9 Si 0.93 46.15 29.66 68.60 2.03 48.19 16
10 H -0.29 -14.07 7.11 99.48 0.71 -13.36 16
11 H -0.30 -14.83 7.11 99.48 0.71 -14.12 16
12 H -0.28 -13.74 7.11 99.48 0.71 -13.03 16
13 C 0.15 5.95 4.82 86.38 0.42 6.37 16
14 C 0.06 2.24 3.48 31.10 0.11 2.35 16
15 H 0.03 1.42 8.14 -2.39 -0.02 1.40 16
16 C -0.14 -3.73 6.63 31.61 0.21 -3.52 16
17 C -0.14 -3.00 6.63 31.61 0.21 -2.79 16
18 C 0.05 1.39 3.92 31.10 0.12 1.51 16
19 H 0.05 1.45 8.14 -2.38 -0.02 1.43 16
20 C -0.14 -3.00 9.52 71.98 0.69 -2.32 16
21 O -0.37 -13.62 8.38 -148.98 -1.25 -14.87 16
22 H 0.07 2.83 5.29 -2.39 -0.01 2.81 16
23 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16
24 H 0.04 1.74 7.12 -2.39 -0.02 1.73 16
25 H 0.06 3.32 5.90 -2.39 -0.01 3.31 16
26 H 0.03 1.59 5.74 -2.38 -0.01 1.57 16
27 H 0.03 1.53 8.14 -2.39 -0.02 1.51 16
28 H 0.03 1.60 7.69 -2.39 -0.02 1.59 16
29 H 0.25 14.19 8.31 -92.71 -0.77 13.42 16
30 H 0.05 2.08 8.09 -2.39 -0.02 2.07 16
31 H 0.07 2.63 5.42 -2.39 -0.01 2.62 16
32 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16
33 H 0.08 1.95 7.87 -2.39 -0.02 1.93 16
34 H 0.09 1.62 7.87 -2.39 -0.02 1.60 16
35 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16
36 H 0.09 1.45 8.14 -2.39 -0.02 1.44 16
37 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16
38 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16
Total: -1.00 -63.24 290.03 4.35 -58.89
By element:
Atomic # 1 Polarization: 8.44 SS G_CDS: 1.01 Total: 9.45 kcal
Atomic # 6 Polarization: -20.25 SS G_CDS: 4.16 Total: -16.08 kcal
Atomic # 7 Polarization: -83.96 SS G_CDS: -1.61 Total: -85.57 kcal
Atomic # 8 Polarization: -13.62 SS G_CDS: -1.25 Total: -14.87 kcal
Atomic # 14 Polarization: 46.15 SS G_CDS: 2.03 Total: 48.19 kcal
Total: -63.24 4.35 -58.89 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000299997222.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 16.028 kcal
(2) G-P(sol) polarization free energy of solvation -63.242 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.215 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.351 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.892 kcal
(6) G-S(sol) free energy of system = (1) + (5) -42.864 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.45 seconds