Wall clock time and date at job start Mon Mar 30 2020 03:36:51
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 H 1.09000 * 109.52545 * 2 1
4 4 C 1.53097 * 109.52185 * 239.87511 * 2 1 3
5 5 O 1.42898 * 109.41405 * 182.48565 * 4 2 1
6 6 C 1.42899 * 114.10053 * 61.16391 * 5 4 2
7 7 C 1.53098 * 109.40993 * 298.83671 * 6 5 4
8 8 C 1.53177 * 109.21356 * 57.57693 * 7 6 5
9 9 H 1.09005 * 109.54330 * 62.92184 * 8 7 6
10 10 N 1.46898 * 109.54270 * 183.18140 * 8 7 6
11 11 C 1.46897 * 111.00288 * 274.99931 * 10 8 7
12 12 C 1.53001 * 109.47471 * 179.97438 * 11 10 8
13 13 C 1.52991 * 109.47433 * 180.02562 * 12 11 10
14 14 C 1.50700 * 109.47327 * 180.02562 * 13 12 11
15 15 H 1.08002 * 119.99936 * 359.97438 * 14 13 12
16 16 C 1.37880 * 120.00110 * 179.97438 * 14 13 12
17 17 N 1.31516 * 120.00124 * 0.02562 * 16 14 13
18 18 Si 1.86803 * 120.00036 * 179.97438 * 16 14 13
19 19 H 1.48500 * 109.46997 * 89.99986 * 18 16 14
20 20 H 1.48493 * 109.47150 * 210.00326 * 18 16 14
21 21 H 1.48498 * 109.46899 * 330.00297 * 18 16 14
22 22 H 1.09002 * 109.47233 * 180.12113 * 1 2 3
23 23 H 1.09001 * 109.47385 * 300.12482 * 1 2 3
24 24 H 1.09005 * 109.47252 * 60.12678 * 1 2 3
25 25 H 1.09007 * 109.47760 * 62.49891 * 4 2 1
26 26 H 1.08997 * 109.48022 * 302.47169 * 4 2 1
27 27 H 1.08999 * 109.48409 * 178.86351 * 6 5 4
28 28 H 1.08998 * 109.49466 * 58.82352 * 6 5 4
29 29 H 1.09002 * 109.52244 * 177.51632 * 7 6 5
30 30 H 1.09004 * 109.52508 * 297.64161 * 7 6 5
31 31 H 1.00904 * 110.99693 * 151.04825 * 10 8 7
32 32 H 1.08995 * 109.47406 * 300.00071 * 11 10 8
33 33 H 1.09007 * 109.47073 * 60.00416 * 11 10 8
34 34 H 1.09005 * 109.47094 * 300.00493 * 12 11 10
35 35 H 1.08999 * 109.47104 * 60.00128 * 12 11 10
36 36 H 1.09005 * 109.47007 * 300.00085 * 13 12 11
37 37 H 1.08999 * 109.47249 * 59.99755 * 13 12 11
38 38 H 0.96999 * 119.99792 * 180.02562 * 17 16 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8943 1.0273 0.0000
4 6 2.0416 -0.7242 -1.2481
5 8 3.4694 -0.7736 -1.2168
6 6 4.0043 -1.4817 -0.0967
7 6 3.5716 -0.7879 1.1976
8 6 2.0420 -0.7246 1.2487
9 1 1.6359 -1.7359 1.2746
10 7 1.6202 0.0070 2.4506
11 6 1.5586 -0.8855 3.6157
12 6 1.1175 -0.0892 4.8455
13 6 1.0539 -1.0186 6.0591
14 6 0.6188 -0.2344 7.2702
15 1 0.4090 0.8214 7.1831
16 6 0.4885 -0.8649 8.4895
17 7 0.7445 -2.1505 8.5957
18 14 -0.0502 0.1073 9.9908
19 1 -1.5311 0.0754 10.0960
20 1 0.5458 -0.4947 11.2104
21 1 0.4065 1.5142 9.8595
22 1 -0.3634 -1.0277 0.0022
23 1 -0.3634 0.5158 0.8889
24 1 -0.3634 0.5119 -0.8911
25 1 1.7158 -0.1873 -2.1390
26 1 1.6431 -1.7385 -1.2687
27 1 5.0925 -1.4903 -0.1581
28 1 3.6317 -2.5059 -0.1022
29 1 3.9417 -1.3513 2.0542
30 1 3.9790 0.2229 1.2229
31 1 0.7353 0.4682 2.3012
32 1 0.8427 -1.6846 3.4239
33 1 2.5438 -1.3158 3.7963
34 1 1.8338 0.7097 5.0372
35 1 0.1325 0.3415 4.6653
36 1 0.3378 -1.8178 5.8676
37 1 2.0391 -1.4490 6.2391
38 1 0.6525 -2.5941 9.4534
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000300830123.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:36:51
Heat of formation + Delta-G solvation = -75.451382 kcal
Electronic energy + Delta-G solvation = -15912.339053 eV
Core-core repulsion = 13367.498029 eV
Total energy + Delta-G solvation = -2544.841024 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 227.163 amu
Computer time = 0.32 seconds
Orbital eigenvalues (eV)
-39.78023 -36.57298 -34.25946 -32.89760 -31.84982 -30.09241 -26.99714 -26.26830
-23.84546 -22.60218 -21.84278 -20.41713 -19.70514 -16.50906 -16.28234 -16.19590
-15.44936 -15.03177 -14.63151 -14.38559 -14.21116 -13.56054 -13.14763 -12.96750
-12.31460 -12.23175 -12.13950 -11.84462 -11.61235 -11.23138 -11.13188 -10.85081
-10.67558 -10.55935 -10.44439 -10.29985 -9.71677 -9.68101 -9.29036 -9.03358
-8.33532 -8.17582 -5.98670 -4.00737 3.32892 3.38976 3.42961 3.73199
4.26286 4.48357 4.54284 4.69218 4.75116 5.06201 5.13093 5.25360
5.32188 5.37170 5.42963 5.48522 5.52933 5.65309 5.75358 5.79678
5.90277 5.92531 5.99482 6.11144 6.27751 6.35182 6.72438 6.78730
7.04568 7.14465 7.36136 7.64192 7.69573 7.84450 8.01720 8.45130
9.06453 9.63255 11.12823
Molecular weight = 227.16amu
Principal moments of inertia in cm(-1)
A = 0.055118 B = 0.004297 C = 0.004129
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 507.883342 B = 6514.280567 C = 6779.145354
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.151 4.151
2 C -0.130 4.130
3 H 0.087 0.913
4 C 0.069 3.931
5 O -0.384 6.384
6 C 0.061 3.939
7 C -0.145 4.145
8 C 0.090 3.910
9 H 0.041 0.959
10 N -0.687 5.687
11 C 0.059 3.941
12 C -0.107 4.107
13 C 0.022 3.978
14 C -0.519 4.519
15 H 0.055 0.945
16 C 0.056 3.944
17 N -0.897 5.897
18 Si 0.892 3.108
19 H -0.281 1.281
20 H -0.286 1.286
21 H -0.274 1.274
22 H 0.055 0.945
23 H 0.063 0.937
24 H 0.060 0.940
25 H 0.093 0.907
26 H 0.048 0.952
27 H 0.094 0.906
28 H 0.048 0.952
29 H 0.074 0.926
30 H 0.078 0.922
31 H 0.338 0.662
32 H 0.023 0.977
33 H 0.066 0.934
34 H 0.056 0.944
35 H 0.044 0.956
36 H 0.013 0.987
37 H 0.016 0.984
38 H 0.260 0.740
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.253 1.642 -18.706 18.913
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.209 4.209
2 C -0.149 4.149
3 H 0.106 0.894
4 C -0.008 4.008
5 O -0.303 6.303
6 C -0.016 4.016
7 C -0.183 4.183
8 C -0.020 4.020
9 H 0.059 0.941
10 N -0.319 5.319
11 C -0.069 4.069
12 C -0.145 4.145
13 C -0.016 4.016
14 C -0.557 4.557
15 H 0.073 0.927
16 C -0.145 4.145
17 N -0.537 5.537
18 Si 0.720 3.280
19 H -0.207 1.207
20 H -0.212 1.212
21 H -0.198 1.198
22 H 0.074 0.926
23 H 0.081 0.919
24 H 0.079 0.921
25 H 0.111 0.889
26 H 0.067 0.933
27 H 0.112 0.888
28 H 0.066 0.934
29 H 0.093 0.907
30 H 0.097 0.903
31 H 0.158 0.842
32 H 0.041 0.959
33 H 0.084 0.916
34 H 0.075 0.925
35 H 0.063 0.937
36 H 0.031 0.969
37 H 0.034 0.966
38 H 0.070 0.930
Dipole moment (debyes) X Y Z Total
from point charges 3.001 1.809 -18.561 18.889
hybrid contribution -1.317 -0.248 1.044 1.699
sum 1.684 1.561 -17.517 17.667
Atomic orbital electron populations
1.21815 0.94588 1.02087 1.02370 1.21969 0.96172 1.01555 0.95210
0.89437 1.22611 0.81122 0.99472 0.97626 1.87905 1.20196 1.76469
1.45736 1.22628 0.99035 0.94439 0.85538 1.22222 0.95809 1.02623
0.97656 1.21532 0.95256 0.95585 0.89636 0.94077 1.60609 1.36340
1.31808 1.03139 1.22167 1.00303 0.94070 0.90370 1.21622 0.99563
0.99215 0.94088 1.19064 0.97086 0.94388 0.91025 1.21261 1.45272
0.95538 0.93630 0.92676 1.25031 0.95569 0.94903 0.99004 1.69968
1.49492 1.09204 1.24988 0.86593 0.78721 0.80252 0.82441 1.20707
1.21226 1.19838 0.92618 0.91853 0.92131 0.88910 0.93338 0.88776
0.93415 0.90741 0.90302 0.84168 0.95876 0.91551 0.92545 0.93731
0.96862 0.96590 0.93046
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.40 9.01 37.16 0.33 -1.07 16
2 C -0.13 -1.37 2.54 -90.48 -0.23 -1.60 16
3 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16
4 C 0.07 0.68 6.13 37.21 0.23 0.91 16
5 O -0.38 -4.53 10.76 -35.23 -0.38 -4.91 16
6 C 0.06 0.64 6.84 37.21 0.25 0.90 16
7 C -0.14 -1.76 5.62 -26.59 -0.15 -1.91 16
8 C 0.09 1.14 2.02 -67.53 -0.14 1.00 16
9 H 0.04 0.54 7.81 -51.93 -0.41 0.14 16
10 N -0.69 -10.19 6.31 -106.53 -0.67 -10.86 16
11 C 0.06 1.04 5.49 -3.82 -0.02 1.02 16
12 C -0.11 -2.25 5.41 -26.74 -0.14 -2.40 16
13 C 0.02 0.58 4.97 -27.89 -0.14 0.44 16
14 C -0.52 -14.95 9.11 -34.44 -0.31 -15.27 16
15 H 0.05 1.55 7.74 -52.49 -0.41 1.14 16
16 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16
17 N -0.90 -27.29 13.29 55.43 0.74 -26.55 16
18 Si 0.89 21.90 29.54 -169.99 -5.02 16.88 16
19 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16
20 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16
21 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16
22 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16
23 H 0.06 0.62 6.37 -51.93 -0.33 0.29 16
24 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16
25 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16
26 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16
27 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16
28 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16
29 H 0.07 0.94 7.55 -51.93 -0.39 0.55 16
30 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16
31 H 0.34 4.72 6.39 -39.29 -0.25 4.47 16
32 H 0.02 0.41 8.06 -51.93 -0.42 -0.01 16
33 H 0.07 1.19 7.51 -51.92 -0.39 0.80 16
34 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16
35 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16
36 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16
37 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16
38 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16
LS Contribution 301.28 15.07 4.54 4.54
Total: -1.00 -30.55 301.28 -8.01 -38.57
By element:
Atomic # 1 Polarization: 5.60 SS G_CDS: -6.80 Total: -1.21 kcal
Atomic # 6 Polarization: -16.04 SS G_CDS: -0.41 Total: -16.46 kcal
Atomic # 7 Polarization: -37.47 SS G_CDS: 0.06 Total: -37.41 kcal
Atomic # 8 Polarization: -4.53 SS G_CDS: -0.38 Total: -4.91 kcal
Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal
Total LS contribution 4.54 Total: 4.54 kcal
Total: -30.55 -8.01 -38.57 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000300830123.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -36.886 kcal
(2) G-P(sol) polarization free energy of solvation -30.552 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.438 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.013 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.565 kcal
(6) G-S(sol) free energy of system = (1) + (5) -75.451 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.32 seconds