Wall clock time and date at job start Mon Mar 30 2020 03:36:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.52545 * 2 1 4 4 C 1.53097 * 109.52185 * 239.87511 * 2 1 3 5 5 O 1.42898 * 109.41405 * 182.48565 * 4 2 1 6 6 C 1.42899 * 114.10053 * 61.16391 * 5 4 2 7 7 C 1.53098 * 109.40993 * 298.83671 * 6 5 4 8 8 C 1.53177 * 109.21356 * 57.57693 * 7 6 5 9 9 H 1.09005 * 109.54330 * 62.92184 * 8 7 6 10 10 N 1.46898 * 109.54270 * 183.18140 * 8 7 6 11 11 C 1.46897 * 111.00288 * 274.99931 * 10 8 7 12 12 C 1.53001 * 109.47471 * 179.97438 * 11 10 8 13 13 C 1.52991 * 109.47433 * 180.02562 * 12 11 10 14 14 C 1.50700 * 109.47327 * 180.02562 * 13 12 11 15 15 H 1.08002 * 119.99936 * 359.97438 * 14 13 12 16 16 C 1.37880 * 120.00110 * 179.97438 * 14 13 12 17 17 N 1.31516 * 120.00124 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 120.00036 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.46997 * 89.99986 * 18 16 14 20 20 H 1.48493 * 109.47150 * 210.00326 * 18 16 14 21 21 H 1.48498 * 109.46899 * 330.00297 * 18 16 14 22 22 H 1.09002 * 109.47233 * 180.12113 * 1 2 3 23 23 H 1.09001 * 109.47385 * 300.12482 * 1 2 3 24 24 H 1.09005 * 109.47252 * 60.12678 * 1 2 3 25 25 H 1.09007 * 109.47760 * 62.49891 * 4 2 1 26 26 H 1.08997 * 109.48022 * 302.47169 * 4 2 1 27 27 H 1.08999 * 109.48409 * 178.86351 * 6 5 4 28 28 H 1.08998 * 109.49466 * 58.82352 * 6 5 4 29 29 H 1.09002 * 109.52244 * 177.51632 * 7 6 5 30 30 H 1.09004 * 109.52508 * 297.64161 * 7 6 5 31 31 H 1.00904 * 110.99693 * 151.04825 * 10 8 7 32 32 H 1.08995 * 109.47406 * 300.00071 * 11 10 8 33 33 H 1.09007 * 109.47073 * 60.00416 * 11 10 8 34 34 H 1.09005 * 109.47094 * 300.00493 * 12 11 10 35 35 H 1.08999 * 109.47104 * 60.00128 * 12 11 10 36 36 H 1.09005 * 109.47007 * 300.00085 * 13 12 11 37 37 H 1.08999 * 109.47249 * 59.99755 * 13 12 11 38 38 H 0.96999 * 119.99792 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0416 -0.7242 -1.2481 5 8 3.4694 -0.7736 -1.2168 6 6 4.0043 -1.4817 -0.0967 7 6 3.5716 -0.7879 1.1976 8 6 2.0420 -0.7246 1.2487 9 1 1.6359 -1.7359 1.2746 10 7 1.6202 0.0070 2.4506 11 6 1.5586 -0.8855 3.6157 12 6 1.1175 -0.0892 4.8455 13 6 1.0539 -1.0186 6.0591 14 6 0.6188 -0.2344 7.2702 15 1 0.4090 0.8214 7.1831 16 6 0.4885 -0.8649 8.4895 17 7 0.7445 -2.1505 8.5957 18 14 -0.0502 0.1073 9.9908 19 1 -1.5311 0.0754 10.0960 20 1 0.5458 -0.4947 11.2104 21 1 0.4065 1.5142 9.8595 22 1 -0.3634 -1.0277 0.0022 23 1 -0.3634 0.5158 0.8889 24 1 -0.3634 0.5119 -0.8911 25 1 1.7158 -0.1873 -2.1390 26 1 1.6431 -1.7385 -1.2687 27 1 5.0925 -1.4903 -0.1581 28 1 3.6317 -2.5059 -0.1022 29 1 3.9417 -1.3513 2.0542 30 1 3.9790 0.2229 1.2229 31 1 0.7353 0.4682 2.3012 32 1 0.8427 -1.6846 3.4239 33 1 2.5438 -1.3158 3.7963 34 1 1.8338 0.7097 5.0372 35 1 0.1325 0.3415 4.6653 36 1 0.3378 -1.8178 5.8676 37 1 2.0391 -1.4490 6.2391 38 1 0.6525 -2.5941 9.4534 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000300830123.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:36:51 Heat of formation + Delta-G solvation = -75.451382 kcal Electronic energy + Delta-G solvation = -15912.339053 eV Core-core repulsion = 13367.498029 eV Total energy + Delta-G solvation = -2544.841024 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.78023 -36.57298 -34.25946 -32.89760 -31.84982 -30.09241 -26.99714 -26.26830 -23.84546 -22.60218 -21.84278 -20.41713 -19.70514 -16.50906 -16.28234 -16.19590 -15.44936 -15.03177 -14.63151 -14.38559 -14.21116 -13.56054 -13.14763 -12.96750 -12.31460 -12.23175 -12.13950 -11.84462 -11.61235 -11.23138 -11.13188 -10.85081 -10.67558 -10.55935 -10.44439 -10.29985 -9.71677 -9.68101 -9.29036 -9.03358 -8.33532 -8.17582 -5.98670 -4.00737 3.32892 3.38976 3.42961 3.73199 4.26286 4.48357 4.54284 4.69218 4.75116 5.06201 5.13093 5.25360 5.32188 5.37170 5.42963 5.48522 5.52933 5.65309 5.75358 5.79678 5.90277 5.92531 5.99482 6.11144 6.27751 6.35182 6.72438 6.78730 7.04568 7.14465 7.36136 7.64192 7.69573 7.84450 8.01720 8.45130 9.06453 9.63255 11.12823 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.055118 B = 0.004297 C = 0.004129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 507.883342 B = 6514.280567 C = 6779.145354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.130 4.130 3 H 0.087 0.913 4 C 0.069 3.931 5 O -0.384 6.384 6 C 0.061 3.939 7 C -0.145 4.145 8 C 0.090 3.910 9 H 0.041 0.959 10 N -0.687 5.687 11 C 0.059 3.941 12 C -0.107 4.107 13 C 0.022 3.978 14 C -0.519 4.519 15 H 0.055 0.945 16 C 0.056 3.944 17 N -0.897 5.897 18 Si 0.892 3.108 19 H -0.281 1.281 20 H -0.286 1.286 21 H -0.274 1.274 22 H 0.055 0.945 23 H 0.063 0.937 24 H 0.060 0.940 25 H 0.093 0.907 26 H 0.048 0.952 27 H 0.094 0.906 28 H 0.048 0.952 29 H 0.074 0.926 30 H 0.078 0.922 31 H 0.338 0.662 32 H 0.023 0.977 33 H 0.066 0.934 34 H 0.056 0.944 35 H 0.044 0.956 36 H 0.013 0.987 37 H 0.016 0.984 38 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.253 1.642 -18.706 18.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.149 4.149 3 H 0.106 0.894 4 C -0.008 4.008 5 O -0.303 6.303 6 C -0.016 4.016 7 C -0.183 4.183 8 C -0.020 4.020 9 H 0.059 0.941 10 N -0.319 5.319 11 C -0.069 4.069 12 C -0.145 4.145 13 C -0.016 4.016 14 C -0.557 4.557 15 H 0.073 0.927 16 C -0.145 4.145 17 N -0.537 5.537 18 Si 0.720 3.280 19 H -0.207 1.207 20 H -0.212 1.212 21 H -0.198 1.198 22 H 0.074 0.926 23 H 0.081 0.919 24 H 0.079 0.921 25 H 0.111 0.889 26 H 0.067 0.933 27 H 0.112 0.888 28 H 0.066 0.934 29 H 0.093 0.907 30 H 0.097 0.903 31 H 0.158 0.842 32 H 0.041 0.959 33 H 0.084 0.916 34 H 0.075 0.925 35 H 0.063 0.937 36 H 0.031 0.969 37 H 0.034 0.966 38 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 3.001 1.809 -18.561 18.889 hybrid contribution -1.317 -0.248 1.044 1.699 sum 1.684 1.561 -17.517 17.667 Atomic orbital electron populations 1.21815 0.94588 1.02087 1.02370 1.21969 0.96172 1.01555 0.95210 0.89437 1.22611 0.81122 0.99472 0.97626 1.87905 1.20196 1.76469 1.45736 1.22628 0.99035 0.94439 0.85538 1.22222 0.95809 1.02623 0.97656 1.21532 0.95256 0.95585 0.89636 0.94077 1.60609 1.36340 1.31808 1.03139 1.22167 1.00303 0.94070 0.90370 1.21622 0.99563 0.99215 0.94088 1.19064 0.97086 0.94388 0.91025 1.21261 1.45272 0.95538 0.93630 0.92676 1.25031 0.95569 0.94903 0.99004 1.69968 1.49492 1.09204 1.24988 0.86593 0.78721 0.80252 0.82441 1.20707 1.21226 1.19838 0.92618 0.91853 0.92131 0.88910 0.93338 0.88776 0.93415 0.90741 0.90302 0.84168 0.95876 0.91551 0.92545 0.93731 0.96862 0.96590 0.93046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 9.01 37.16 0.33 -1.07 16 2 C -0.13 -1.37 2.54 -90.48 -0.23 -1.60 16 3 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 4 C 0.07 0.68 6.13 37.21 0.23 0.91 16 5 O -0.38 -4.53 10.76 -35.23 -0.38 -4.91 16 6 C 0.06 0.64 6.84 37.21 0.25 0.90 16 7 C -0.14 -1.76 5.62 -26.59 -0.15 -1.91 16 8 C 0.09 1.14 2.02 -67.53 -0.14 1.00 16 9 H 0.04 0.54 7.81 -51.93 -0.41 0.14 16 10 N -0.69 -10.19 6.31 -106.53 -0.67 -10.86 16 11 C 0.06 1.04 5.49 -3.82 -0.02 1.02 16 12 C -0.11 -2.25 5.41 -26.74 -0.14 -2.40 16 13 C 0.02 0.58 4.97 -27.89 -0.14 0.44 16 14 C -0.52 -14.95 9.11 -34.44 -0.31 -15.27 16 15 H 0.05 1.55 7.74 -52.49 -0.41 1.14 16 16 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 17 N -0.90 -27.29 13.29 55.43 0.74 -26.55 16 18 Si 0.89 21.90 29.54 -169.99 -5.02 16.88 16 19 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 20 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 21 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 22 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 23 H 0.06 0.62 6.37 -51.93 -0.33 0.29 16 24 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 27 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.07 0.94 7.55 -51.93 -0.39 0.55 16 30 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.34 4.72 6.39 -39.29 -0.25 4.47 16 32 H 0.02 0.41 8.06 -51.93 -0.42 -0.01 16 33 H 0.07 1.19 7.51 -51.92 -0.39 0.80 16 34 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 35 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 301.28 15.07 4.54 4.54 Total: -1.00 -30.55 301.28 -8.01 -38.57 By element: Atomic # 1 Polarization: 5.60 SS G_CDS: -6.80 Total: -1.21 kcal Atomic # 6 Polarization: -16.04 SS G_CDS: -0.41 Total: -16.46 kcal Atomic # 7 Polarization: -37.47 SS G_CDS: 0.06 Total: -37.41 kcal Atomic # 8 Polarization: -4.53 SS G_CDS: -0.38 Total: -4.91 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -30.55 -8.01 -38.57 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300830123.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.886 kcal (2) G-P(sol) polarization free energy of solvation -30.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds