Wall clock time and date at job start Mon Mar 30 2020 03:36:51
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 H 1.09000 * 109.52545 * 2 1
4 4 C 1.53097 * 109.52185 * 239.87511 * 2 1 3
5 5 O 1.42898 * 109.41405 * 182.48565 * 4 2 1
6 6 C 1.42899 * 114.10053 * 61.16391 * 5 4 2
7 7 C 1.53098 * 109.40993 * 298.83671 * 6 5 4
8 8 C 1.53177 * 109.21356 * 57.57693 * 7 6 5
9 9 H 1.09005 * 109.54330 * 62.92184 * 8 7 6
10 10 N 1.46898 * 109.54270 * 183.18140 * 8 7 6
11 11 C 1.46897 * 111.00288 * 274.99931 * 10 8 7
12 12 C 1.53001 * 109.47471 * 179.97438 * 11 10 8
13 13 C 1.52991 * 109.47433 * 180.02562 * 12 11 10
14 14 C 1.50700 * 109.47327 * 180.02562 * 13 12 11
15 15 H 1.08002 * 119.99936 * 359.97438 * 14 13 12
16 16 C 1.37880 * 120.00110 * 179.97438 * 14 13 12
17 17 N 1.31516 * 120.00124 * 0.02562 * 16 14 13
18 18 Si 1.86803 * 120.00036 * 179.97438 * 16 14 13
19 19 H 1.48500 * 109.46997 * 89.99986 * 18 16 14
20 20 H 1.48493 * 109.47150 * 210.00326 * 18 16 14
21 21 H 1.48498 * 109.46899 * 330.00297 * 18 16 14
22 22 H 1.09002 * 109.47233 * 180.12113 * 1 2 3
23 23 H 1.09001 * 109.47385 * 300.12482 * 1 2 3
24 24 H 1.09005 * 109.47252 * 60.12678 * 1 2 3
25 25 H 1.09007 * 109.47760 * 62.49891 * 4 2 1
26 26 H 1.08997 * 109.48022 * 302.47169 * 4 2 1
27 27 H 1.08999 * 109.48409 * 178.86351 * 6 5 4
28 28 H 1.08998 * 109.49466 * 58.82352 * 6 5 4
29 29 H 1.09002 * 109.52244 * 177.51632 * 7 6 5
30 30 H 1.09004 * 109.52508 * 297.64161 * 7 6 5
31 31 H 1.00904 * 110.99693 * 151.04825 * 10 8 7
32 32 H 1.08995 * 109.47406 * 300.00071 * 11 10 8
33 33 H 1.09007 * 109.47073 * 60.00416 * 11 10 8
34 34 H 1.09005 * 109.47094 * 300.00493 * 12 11 10
35 35 H 1.08999 * 109.47104 * 60.00128 * 12 11 10
36 36 H 1.09005 * 109.47007 * 300.00085 * 13 12 11
37 37 H 1.08999 * 109.47249 * 59.99755 * 13 12 11
38 38 H 0.96999 * 119.99792 * 180.02562 * 17 16 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8943 1.0273 0.0000
4 6 2.0416 -0.7242 -1.2481
5 8 3.4694 -0.7736 -1.2168
6 6 4.0043 -1.4817 -0.0967
7 6 3.5716 -0.7879 1.1976
8 6 2.0420 -0.7246 1.2487
9 1 1.6359 -1.7359 1.2746
10 7 1.6202 0.0070 2.4506
11 6 1.5586 -0.8855 3.6157
12 6 1.1175 -0.0892 4.8455
13 6 1.0539 -1.0186 6.0591
14 6 0.6188 -0.2344 7.2702
15 1 0.4090 0.8214 7.1831
16 6 0.4885 -0.8649 8.4895
17 7 0.7445 -2.1505 8.5957
18 14 -0.0502 0.1073 9.9908
19 1 -1.5311 0.0754 10.0960
20 1 0.5458 -0.4947 11.2104
21 1 0.4065 1.5142 9.8595
22 1 -0.3634 -1.0277 0.0022
23 1 -0.3634 0.5158 0.8889
24 1 -0.3634 0.5119 -0.8911
25 1 1.7158 -0.1873 -2.1390
26 1 1.6431 -1.7385 -1.2687
27 1 5.0925 -1.4903 -0.1581
28 1 3.6317 -2.5059 -0.1022
29 1 3.9417 -1.3513 2.0542
30 1 3.9790 0.2229 1.2229
31 1 0.7353 0.4682 2.3012
32 1 0.8427 -1.6846 3.4239
33 1 2.5438 -1.3158 3.7963
34 1 1.8338 0.7097 5.0372
35 1 0.1325 0.3415 4.6653
36 1 0.3378 -1.8178 5.8676
37 1 2.0391 -1.4490 6.2391
38 1 0.6525 -2.5941 9.4534
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000300830123.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:36:51
Heat of formation + Delta-G solvation = -95.518911 kcal
Electronic energy + Delta-G solvation = -15913.209246 eV
Core-core repulsion = 13367.498029 eV
Total energy + Delta-G solvation = -2545.711218 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 227.163 amu
Computer time = 0.39 seconds
Orbital eigenvalues (eV)
-40.69359 -37.77982 -35.89659 -34.41318 -33.13479 -31.60016 -28.17651 -27.65951
-25.26624 -23.76341 -23.08843 -22.00915 -20.81889 -18.49943 -17.43918 -17.13324
-16.58214 -16.51394 -16.04834 -15.62276 -15.45818 -14.69076 -14.44214 -14.33472
-13.78758 -13.47812 -13.45770 -12.99679 -12.97569 -12.77084 -12.48564 -12.33231
-12.24694 -11.97702 -11.59833 -11.48661 -11.43715 -11.27189 -11.03336 -10.56476
-10.48889 -9.41006 -8.21228 -6.32488 1.39635 1.41200 1.52611 2.40408
2.92124 3.11944 3.14598 3.65633 3.83005 3.88447 4.15599 4.20944
4.27783 4.35109 4.40772 4.48539 4.60708 4.67460 4.68572 4.77226
4.86800 4.89484 4.94151 5.04267 5.11786 5.15891 5.22969 5.25653
5.36236 5.50709 5.72668 5.84039 6.06386 6.23264 6.25865 6.47096
6.84235 7.36955 8.90787
Molecular weight = 227.16amu
Principal moments of inertia in cm(-1)
A = 0.055118 B = 0.004297 C = 0.004129
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 507.883342 B = 6514.280567 C = 6779.145354
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.149 4.149
2 C -0.123 4.123
3 H 0.079 0.921
4 C 0.067 3.933
5 O -0.399 6.399
6 C 0.063 3.937
7 C -0.144 4.144
8 C 0.087 3.913
9 H 0.039 0.961
10 N -0.687 5.687
11 C 0.074 3.926
12 C -0.092 4.092
13 C 0.025 3.975
14 C -0.544 4.544
15 H 0.059 0.941
16 C -0.001 4.001
17 N -0.934 5.934
18 Si 0.966 3.034
19 H -0.271 1.271
20 H -0.281 1.281
21 H -0.264 1.264
22 H 0.056 0.944
23 H 0.055 0.945
24 H 0.079 0.921
25 H 0.112 0.888
26 H 0.057 0.943
27 H 0.108 0.892
28 H 0.056 0.944
29 H 0.065 0.935
30 H 0.068 0.932
31 H 0.345 0.655
32 H 0.022 0.978
33 H 0.060 0.940
34 H 0.051 0.949
35 H 0.050 0.950
36 H -0.009 1.009
37 H -0.009 1.009
38 H 0.264 0.736
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.742 2.515 -19.501 19.740
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.206 4.206
2 C -0.142 4.142
3 H 0.098 0.902
4 C -0.010 4.010
5 O -0.318 6.318
6 C -0.014 4.014
7 C -0.182 4.182
8 C -0.023 4.023
9 H 0.057 0.943
10 N -0.320 5.320
11 C -0.055 4.055
12 C -0.130 4.130
13 C -0.012 4.012
14 C -0.582 4.582
15 H 0.077 0.923
16 C -0.198 4.198
17 N -0.574 5.574
18 Si 0.791 3.209
19 H -0.196 1.196
20 H -0.207 1.207
21 H -0.188 1.188
22 H 0.075 0.925
23 H 0.074 0.926
24 H 0.098 0.902
25 H 0.130 0.870
26 H 0.075 0.925
27 H 0.126 0.874
28 H 0.075 0.925
29 H 0.084 0.916
30 H 0.086 0.914
31 H 0.165 0.835
32 H 0.040 0.960
33 H 0.078 0.922
34 H 0.070 0.930
35 H 0.069 0.931
36 H 0.009 0.991
37 H 0.009 0.991
38 H 0.073 0.927
Dipole moment (debyes) X Y Z Total
from point charges 2.488 2.692 -19.378 19.722
hybrid contribution -1.146 -0.542 1.262 1.789
sum 1.342 2.150 -18.116 18.293
Atomic orbital electron populations
1.21803 0.93458 1.02375 1.02986 1.21908 0.97057 1.00808 0.94436
0.90227 1.22760 0.80256 1.00156 0.97828 1.87891 1.21296 1.76686
1.45919 1.22665 0.99938 0.94448 0.84324 1.22203 0.95465 1.02090
0.98448 1.21632 0.95594 0.95485 0.89560 0.94349 1.60539 1.36817
1.31441 1.03243 1.21851 0.99681 0.93775 0.90221 1.21374 0.99929
0.98191 0.93529 1.18967 0.94795 0.94520 0.92948 1.21697 1.45605
0.96027 0.94881 0.92263 1.25996 0.95367 0.95960 1.02509 1.70098
1.50300 1.10984 1.26059 0.85429 0.78606 0.78903 0.78009 1.19641
1.20653 1.18790 0.92477 0.92567 0.90209 0.86974 0.92503 0.87412
0.92549 0.91633 0.91364 0.83462 0.96022 0.92197 0.92989 0.93090
0.99084 0.99080 0.92739
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -2.45 9.01 71.98 0.65 -1.80 16
2 C -0.12 -2.39 2.54 -10.70 -0.03 -2.42 16
3 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16
4 C 0.07 1.16 6.13 72.01 0.44 1.61 16
5 O -0.40 -8.65 10.76 -148.98 -1.60 -10.25 16
6 C 0.06 1.25 6.84 72.01 0.49 1.74 16
7 C -0.14 -3.40 5.62 30.69 0.17 -3.23 16
8 C 0.09 2.11 2.02 45.04 0.09 2.20 16
9 H 0.04 0.97 7.81 -2.38 -0.02 0.95 16
10 N -0.69 -19.92 6.31 -490.95 -3.10 -23.02 16
11 C 0.07 2.60 5.49 86.30 0.47 3.07 16
12 C -0.09 -3.91 5.41 30.59 0.17 -3.75 16
13 C 0.03 1.37 4.97 29.84 0.15 1.52 16
14 C -0.54 -31.66 9.11 25.60 0.23 -31.43 16
15 H 0.06 3.31 7.74 -2.91 -0.02 3.29 16
16 C 0.00 -0.04 5.46 84.66 0.46 0.42 16
17 N -0.93 -57.57 13.29 21.45 0.28 -57.29 16
18 Si 0.97 44.74 29.54 68.60 2.03 46.76 16
19 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16
20 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16
21 H -0.26 -11.70 7.11 99.48 0.71 -10.99 16
22 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16
23 H 0.06 1.01 6.37 -2.39 -0.02 0.99 16
24 H 0.08 1.02 8.14 -2.38 -0.02 1.00 16
25 H 0.11 1.52 8.14 -2.38 -0.02 1.50 16
26 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16
27 H 0.11 1.80 8.14 -2.39 -0.02 1.78 16
28 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16
29 H 0.06 1.65 7.55 -2.39 -0.02 1.63 16
30 H 0.07 1.75 8.14 -2.38 -0.02 1.73 16
31 H 0.34 9.25 6.39 -89.69 -0.57 8.68 16
32 H 0.02 0.77 8.06 -2.39 -0.02 0.75 16
33 H 0.06 2.18 7.51 -2.38 -0.02 2.16 16
34 H 0.05 2.24 8.14 -2.38 -0.02 2.22 16
35 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16
36 H -0.01 -0.53 8.14 -2.38 -0.02 -0.55 16
37 H -0.01 -0.54 8.14 -2.39 -0.02 -0.55 16
38 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16
Total: -1.00 -64.98 301.28 1.34 -63.64
By element:
Atomic # 1 Polarization: 11.79 SS G_CDS: 0.43 Total: 12.22 kcal
Atomic # 6 Polarization: -35.37 SS G_CDS: 3.30 Total: -32.07 kcal
Atomic # 7 Polarization: -77.49 SS G_CDS: -2.81 Total: -80.31 kcal
Atomic # 8 Polarization: -8.65 SS G_CDS: -1.60 Total: -10.25 kcal
Atomic # 14 Polarization: 44.74 SS G_CDS: 2.03 Total: 46.76 kcal
Total: -64.98 1.34 -63.64 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000300830123.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -31.882 kcal
(2) G-P(sol) polarization free energy of solvation -64.979 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.861 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.342 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.637 kcal
(6) G-S(sol) free energy of system = (1) + (5) -95.519 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.39 seconds