Wall clock time and date at job start Mon Mar 30 2020 03:36:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.52545 * 2 1 4 4 C 1.53097 * 109.52185 * 239.87511 * 2 1 3 5 5 O 1.42898 * 109.41405 * 182.48565 * 4 2 1 6 6 C 1.42899 * 114.10053 * 61.16391 * 5 4 2 7 7 C 1.53098 * 109.40993 * 298.83671 * 6 5 4 8 8 C 1.53177 * 109.21356 * 57.57693 * 7 6 5 9 9 H 1.09005 * 109.54330 * 62.92184 * 8 7 6 10 10 N 1.46898 * 109.54270 * 183.18140 * 8 7 6 11 11 C 1.46897 * 111.00288 * 274.99931 * 10 8 7 12 12 C 1.53001 * 109.47471 * 179.97438 * 11 10 8 13 13 C 1.52991 * 109.47433 * 180.02562 * 12 11 10 14 14 C 1.50700 * 109.47327 * 180.02562 * 13 12 11 15 15 H 1.08002 * 119.99936 * 359.97438 * 14 13 12 16 16 C 1.37880 * 120.00110 * 179.97438 * 14 13 12 17 17 N 1.31516 * 120.00124 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 120.00036 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.46997 * 89.99986 * 18 16 14 20 20 H 1.48493 * 109.47150 * 210.00326 * 18 16 14 21 21 H 1.48498 * 109.46899 * 330.00297 * 18 16 14 22 22 H 1.09002 * 109.47233 * 180.12113 * 1 2 3 23 23 H 1.09001 * 109.47385 * 300.12482 * 1 2 3 24 24 H 1.09005 * 109.47252 * 60.12678 * 1 2 3 25 25 H 1.09007 * 109.47760 * 62.49891 * 4 2 1 26 26 H 1.08997 * 109.48022 * 302.47169 * 4 2 1 27 27 H 1.08999 * 109.48409 * 178.86351 * 6 5 4 28 28 H 1.08998 * 109.49466 * 58.82352 * 6 5 4 29 29 H 1.09002 * 109.52244 * 177.51632 * 7 6 5 30 30 H 1.09004 * 109.52508 * 297.64161 * 7 6 5 31 31 H 1.00904 * 110.99693 * 151.04825 * 10 8 7 32 32 H 1.08995 * 109.47406 * 300.00071 * 11 10 8 33 33 H 1.09007 * 109.47073 * 60.00416 * 11 10 8 34 34 H 1.09005 * 109.47094 * 300.00493 * 12 11 10 35 35 H 1.08999 * 109.47104 * 60.00128 * 12 11 10 36 36 H 1.09005 * 109.47007 * 300.00085 * 13 12 11 37 37 H 1.08999 * 109.47249 * 59.99755 * 13 12 11 38 38 H 0.96999 * 119.99792 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0416 -0.7242 -1.2481 5 8 3.4694 -0.7736 -1.2168 6 6 4.0043 -1.4817 -0.0967 7 6 3.5716 -0.7879 1.1976 8 6 2.0420 -0.7246 1.2487 9 1 1.6359 -1.7359 1.2746 10 7 1.6202 0.0070 2.4506 11 6 1.5586 -0.8855 3.6157 12 6 1.1175 -0.0892 4.8455 13 6 1.0539 -1.0186 6.0591 14 6 0.6188 -0.2344 7.2702 15 1 0.4090 0.8214 7.1831 16 6 0.4885 -0.8649 8.4895 17 7 0.7445 -2.1505 8.5957 18 14 -0.0502 0.1073 9.9908 19 1 -1.5311 0.0754 10.0960 20 1 0.5458 -0.4947 11.2104 21 1 0.4065 1.5142 9.8595 22 1 -0.3634 -1.0277 0.0022 23 1 -0.3634 0.5158 0.8889 24 1 -0.3634 0.5119 -0.8911 25 1 1.7158 -0.1873 -2.1390 26 1 1.6431 -1.7385 -1.2687 27 1 5.0925 -1.4903 -0.1581 28 1 3.6317 -2.5059 -0.1022 29 1 3.9417 -1.3513 2.0542 30 1 3.9790 0.2229 1.2229 31 1 0.7353 0.4682 2.3012 32 1 0.8427 -1.6846 3.4239 33 1 2.5438 -1.3158 3.7963 34 1 1.8338 0.7097 5.0372 35 1 0.1325 0.3415 4.6653 36 1 0.3378 -1.8178 5.8676 37 1 2.0391 -1.4490 6.2391 38 1 0.6525 -2.5941 9.4534 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000300830123.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:36:51 Heat of formation + Delta-G solvation = -95.518911 kcal Electronic energy + Delta-G solvation = -15913.209246 eV Core-core repulsion = 13367.498029 eV Total energy + Delta-G solvation = -2545.711218 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.69359 -37.77982 -35.89659 -34.41318 -33.13479 -31.60016 -28.17651 -27.65951 -25.26624 -23.76341 -23.08843 -22.00915 -20.81889 -18.49943 -17.43918 -17.13324 -16.58214 -16.51394 -16.04834 -15.62276 -15.45818 -14.69076 -14.44214 -14.33472 -13.78758 -13.47812 -13.45770 -12.99679 -12.97569 -12.77084 -12.48564 -12.33231 -12.24694 -11.97702 -11.59833 -11.48661 -11.43715 -11.27189 -11.03336 -10.56476 -10.48889 -9.41006 -8.21228 -6.32488 1.39635 1.41200 1.52611 2.40408 2.92124 3.11944 3.14598 3.65633 3.83005 3.88447 4.15599 4.20944 4.27783 4.35109 4.40772 4.48539 4.60708 4.67460 4.68572 4.77226 4.86800 4.89484 4.94151 5.04267 5.11786 5.15891 5.22969 5.25653 5.36236 5.50709 5.72668 5.84039 6.06386 6.23264 6.25865 6.47096 6.84235 7.36955 8.90787 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.055118 B = 0.004297 C = 0.004129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 507.883342 B = 6514.280567 C = 6779.145354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.123 4.123 3 H 0.079 0.921 4 C 0.067 3.933 5 O -0.399 6.399 6 C 0.063 3.937 7 C -0.144 4.144 8 C 0.087 3.913 9 H 0.039 0.961 10 N -0.687 5.687 11 C 0.074 3.926 12 C -0.092 4.092 13 C 0.025 3.975 14 C -0.544 4.544 15 H 0.059 0.941 16 C -0.001 4.001 17 N -0.934 5.934 18 Si 0.966 3.034 19 H -0.271 1.271 20 H -0.281 1.281 21 H -0.264 1.264 22 H 0.056 0.944 23 H 0.055 0.945 24 H 0.079 0.921 25 H 0.112 0.888 26 H 0.057 0.943 27 H 0.108 0.892 28 H 0.056 0.944 29 H 0.065 0.935 30 H 0.068 0.932 31 H 0.345 0.655 32 H 0.022 0.978 33 H 0.060 0.940 34 H 0.051 0.949 35 H 0.050 0.950 36 H -0.009 1.009 37 H -0.009 1.009 38 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.742 2.515 -19.501 19.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.142 4.142 3 H 0.098 0.902 4 C -0.010 4.010 5 O -0.318 6.318 6 C -0.014 4.014 7 C -0.182 4.182 8 C -0.023 4.023 9 H 0.057 0.943 10 N -0.320 5.320 11 C -0.055 4.055 12 C -0.130 4.130 13 C -0.012 4.012 14 C -0.582 4.582 15 H 0.077 0.923 16 C -0.198 4.198 17 N -0.574 5.574 18 Si 0.791 3.209 19 H -0.196 1.196 20 H -0.207 1.207 21 H -0.188 1.188 22 H 0.075 0.925 23 H 0.074 0.926 24 H 0.098 0.902 25 H 0.130 0.870 26 H 0.075 0.925 27 H 0.126 0.874 28 H 0.075 0.925 29 H 0.084 0.916 30 H 0.086 0.914 31 H 0.165 0.835 32 H 0.040 0.960 33 H 0.078 0.922 34 H 0.070 0.930 35 H 0.069 0.931 36 H 0.009 0.991 37 H 0.009 0.991 38 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 2.488 2.692 -19.378 19.722 hybrid contribution -1.146 -0.542 1.262 1.789 sum 1.342 2.150 -18.116 18.293 Atomic orbital electron populations 1.21803 0.93458 1.02375 1.02986 1.21908 0.97057 1.00808 0.94436 0.90227 1.22760 0.80256 1.00156 0.97828 1.87891 1.21296 1.76686 1.45919 1.22665 0.99938 0.94448 0.84324 1.22203 0.95465 1.02090 0.98448 1.21632 0.95594 0.95485 0.89560 0.94349 1.60539 1.36817 1.31441 1.03243 1.21851 0.99681 0.93775 0.90221 1.21374 0.99929 0.98191 0.93529 1.18967 0.94795 0.94520 0.92948 1.21697 1.45605 0.96027 0.94881 0.92263 1.25996 0.95367 0.95960 1.02509 1.70098 1.50300 1.10984 1.26059 0.85429 0.78606 0.78903 0.78009 1.19641 1.20653 1.18790 0.92477 0.92567 0.90209 0.86974 0.92503 0.87412 0.92549 0.91633 0.91364 0.83462 0.96022 0.92197 0.92989 0.93090 0.99084 0.99080 0.92739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.45 9.01 71.98 0.65 -1.80 16 2 C -0.12 -2.39 2.54 -10.70 -0.03 -2.42 16 3 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 4 C 0.07 1.16 6.13 72.01 0.44 1.61 16 5 O -0.40 -8.65 10.76 -148.98 -1.60 -10.25 16 6 C 0.06 1.25 6.84 72.01 0.49 1.74 16 7 C -0.14 -3.40 5.62 30.69 0.17 -3.23 16 8 C 0.09 2.11 2.02 45.04 0.09 2.20 16 9 H 0.04 0.97 7.81 -2.38 -0.02 0.95 16 10 N -0.69 -19.92 6.31 -490.95 -3.10 -23.02 16 11 C 0.07 2.60 5.49 86.30 0.47 3.07 16 12 C -0.09 -3.91 5.41 30.59 0.17 -3.75 16 13 C 0.03 1.37 4.97 29.84 0.15 1.52 16 14 C -0.54 -31.66 9.11 25.60 0.23 -31.43 16 15 H 0.06 3.31 7.74 -2.91 -0.02 3.29 16 16 C 0.00 -0.04 5.46 84.66 0.46 0.42 16 17 N -0.93 -57.57 13.29 21.45 0.28 -57.29 16 18 Si 0.97 44.74 29.54 68.60 2.03 46.76 16 19 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 20 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 21 H -0.26 -11.70 7.11 99.48 0.71 -10.99 16 22 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 23 H 0.06 1.01 6.37 -2.39 -0.02 0.99 16 24 H 0.08 1.02 8.14 -2.38 -0.02 1.00 16 25 H 0.11 1.52 8.14 -2.38 -0.02 1.50 16 26 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 27 H 0.11 1.80 8.14 -2.39 -0.02 1.78 16 28 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 29 H 0.06 1.65 7.55 -2.39 -0.02 1.63 16 30 H 0.07 1.75 8.14 -2.38 -0.02 1.73 16 31 H 0.34 9.25 6.39 -89.69 -0.57 8.68 16 32 H 0.02 0.77 8.06 -2.39 -0.02 0.75 16 33 H 0.06 2.18 7.51 -2.38 -0.02 2.16 16 34 H 0.05 2.24 8.14 -2.38 -0.02 2.22 16 35 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 36 H -0.01 -0.53 8.14 -2.38 -0.02 -0.55 16 37 H -0.01 -0.54 8.14 -2.39 -0.02 -0.55 16 38 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 Total: -1.00 -64.98 301.28 1.34 -63.64 By element: Atomic # 1 Polarization: 11.79 SS G_CDS: 0.43 Total: 12.22 kcal Atomic # 6 Polarization: -35.37 SS G_CDS: 3.30 Total: -32.07 kcal Atomic # 7 Polarization: -77.49 SS G_CDS: -2.81 Total: -80.31 kcal Atomic # 8 Polarization: -8.65 SS G_CDS: -1.60 Total: -10.25 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 2.03 Total: 46.76 kcal Total: -64.98 1.34 -63.64 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300830123.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.882 kcal (2) G-P(sol) polarization free energy of solvation -64.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds