Wall clock time and date at job start Mon Mar 30 2020 03:36:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 109.57235 * 2 1 4 4 C 1.53098 * 109.59864 * 120.11713 * 2 1 3 5 5 O 1.42902 * 109.48860 * 177.42493 * 4 2 1 6 6 C 1.42908 * 114.09214 * 298.89088 * 5 4 2 7 7 C 1.53084 * 109.41905 * 61.15895 * 6 5 4 8 8 C 1.53174 * 109.52164 * 239.84242 * 2 1 3 9 9 H 1.09003 * 109.54791 * 303.06680 * 8 2 1 10 10 N 1.46907 * 109.54523 * 63.24653 * 8 2 1 11 11 C 1.46895 * 110.99969 * 204.82543 * 10 8 2 12 12 C 1.53005 * 109.47071 * 180.02562 * 11 10 8 13 13 C 1.53004 * 109.46983 * 179.97438 * 12 11 10 14 14 C 1.50695 * 109.46637 * 179.97438 * 13 12 11 15 15 H 1.08004 * 120.00546 * 0.27598 * 14 13 12 16 16 C 1.37885 * 119.99721 * 179.97438 * 14 13 12 17 17 N 1.31514 * 120.00035 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99853 * 179.97438 * 16 14 13 19 19 H 1.48494 * 109.47228 * 0.02562 * 18 16 14 20 20 H 1.48501 * 109.46793 * 120.00131 * 18 16 14 21 21 H 1.48500 * 109.47000 * 240.00224 * 18 16 14 22 22 H 1.09003 * 109.47148 * 180.15692 * 1 2 3 23 23 H 1.08994 * 109.46987 * 300.15677 * 1 2 3 24 24 H 1.09001 * 109.47410 * 60.15950 * 1 2 3 25 25 H 1.09003 * 109.40721 * 57.44354 * 4 2 1 26 26 H 1.09003 * 109.49197 * 297.45828 * 4 2 1 27 27 H 1.08999 * 109.47921 * 301.16651 * 6 5 4 28 28 H 1.09005 * 109.47742 * 181.13853 * 6 5 4 29 29 H 1.08996 * 109.52545 * 182.48448 * 7 6 5 30 30 H 1.08998 * 109.52583 * 62.29077 * 7 6 5 31 31 H 1.00902 * 110.99728 * 328.77361 * 10 8 2 32 32 H 1.08997 * 109.47605 * 59.99330 * 11 10 8 33 33 H 1.09004 * 109.47210 * 299.99690 * 11 10 8 34 34 H 1.09000 * 109.46931 * 59.99758 * 12 11 10 35 35 H 1.08997 * 109.46785 * 299.99237 * 12 11 10 36 36 H 1.08992 * 109.47421 * 59.99948 * 13 12 11 37 37 H 1.08997 * 109.46955 * 299.99401 * 13 12 11 38 38 H 0.97000 * 119.99706 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8952 1.0270 0.0000 4 6 2.0436 -0.7237 1.2476 5 8 3.4713 -0.7749 1.2152 6 6 4.0044 -1.4834 0.0945 7 6 3.5716 -0.7890 -1.1994 8 6 2.0419 -0.7253 -1.2483 9 1 1.6355 -1.7364 -1.2750 10 7 1.6188 0.0063 -2.4499 11 6 1.5512 -0.8874 -3.6138 12 6 1.1087 -0.0912 -4.8432 13 6 1.0389 -1.0220 -6.0555 14 6 0.6026 -0.2379 -7.2662 15 1 0.4000 0.8196 -7.1806 16 6 0.4679 -0.8691 -8.4846 17 7 0.7198 -2.1556 -8.5901 18 14 -0.0737 0.1027 -9.9852 19 1 -0.2931 1.5209 -9.6037 20 1 0.9796 0.0287 -11.0294 21 1 -1.3375 -0.4690 -10.5154 22 1 -0.3633 -1.0277 0.0028 23 1 -0.3633 0.5162 0.8885 24 1 -0.3634 0.5113 -0.8914 25 1 1.6439 -1.7376 1.2684 26 1 1.7192 -0.1867 2.1389 27 1 3.6304 -2.5072 0.1003 28 1 5.0927 -1.4935 0.1550 29 1 3.9402 -1.3528 -2.0563 30 1 3.9792 0.2216 -1.2244 31 1 0.7356 0.4702 -2.2985 32 1 0.8335 -1.6843 -3.4189 33 1 2.5345 -1.3209 -3.7967 34 1 1.8268 0.7053 -5.0379 35 1 0.1256 0.3424 -4.6606 36 1 0.3211 -1.8188 -5.8611 37 1 2.0223 -1.4553 -6.2380 38 1 0.6247 -2.5997 -9.4472 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000300830125.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:36:59 Heat of formation + Delta-G solvation = -75.415805 kcal Electronic energy + Delta-G solvation = -15912.871363 eV Core-core repulsion = 13368.031882 eV Total energy + Delta-G solvation = -2544.839481 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.78049 -36.57376 -34.25926 -32.89680 -31.85133 -30.09256 -27.00011 -26.26926 -23.84419 -22.60264 -21.84411 -20.42002 -19.70474 -16.51024 -16.28259 -16.19769 -15.44823 -15.03203 -14.63253 -14.38245 -14.21114 -13.56100 -13.14601 -12.96780 -12.31638 -12.23834 -12.14235 -11.84527 -11.60844 -11.23373 -11.13309 -10.85744 -10.68037 -10.55242 -10.44189 -10.29542 -9.71724 -9.68495 -9.29127 -9.02254 -8.33997 -8.17510 -5.98935 -4.00893 3.31860 3.39184 3.43870 3.73198 4.26300 4.48282 4.54261 4.69090 4.75004 5.06224 5.13061 5.25335 5.32187 5.37019 5.42889 5.48526 5.52908 5.65320 5.75315 5.79640 5.90259 5.92582 5.99363 6.11099 6.27723 6.35150 6.72445 6.78711 7.04450 7.14397 7.36115 7.64244 7.69741 7.84392 8.01601 8.45067 9.06567 9.63167 11.12599 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.055117 B = 0.004298 C = 0.004130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 507.886062 B = 6513.549476 C = 6777.824370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.130 4.130 3 H 0.087 0.913 4 C 0.069 3.931 5 O -0.384 6.384 6 C 0.061 3.939 7 C -0.145 4.145 8 C 0.090 3.910 9 H 0.041 0.959 10 N -0.687 5.687 11 C 0.059 3.941 12 C -0.107 4.107 13 C 0.022 3.978 14 C -0.518 4.518 15 H 0.056 0.944 16 C 0.055 3.945 17 N -0.897 5.897 18 Si 0.892 3.108 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.284 1.284 22 H 0.055 0.945 23 H 0.060 0.940 24 H 0.063 0.937 25 H 0.048 0.952 26 H 0.093 0.907 27 H 0.048 0.952 28 H 0.094 0.906 29 H 0.074 0.926 30 H 0.078 0.922 31 H 0.338 0.662 32 H 0.023 0.977 33 H 0.066 0.934 34 H 0.056 0.944 35 H 0.044 0.956 36 H 0.013 0.987 37 H 0.016 0.984 38 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.301 1.667 18.709 18.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.149 4.149 3 H 0.106 0.894 4 C -0.008 4.008 5 O -0.303 6.303 6 C -0.017 4.017 7 C -0.183 4.183 8 C -0.020 4.020 9 H 0.059 0.941 10 N -0.319 5.319 11 C -0.069 4.069 12 C -0.145 4.145 13 C -0.016 4.016 14 C -0.556 4.556 15 H 0.074 0.926 16 C -0.145 4.145 17 N -0.536 5.536 18 Si 0.720 3.280 19 H -0.197 1.197 20 H -0.210 1.210 21 H -0.210 1.210 22 H 0.074 0.926 23 H 0.079 0.921 24 H 0.082 0.918 25 H 0.066 0.934 26 H 0.111 0.889 27 H 0.066 0.934 28 H 0.112 0.888 29 H 0.093 0.907 30 H 0.097 0.903 31 H 0.158 0.842 32 H 0.041 0.959 33 H 0.084 0.916 34 H 0.075 0.925 35 H 0.063 0.937 36 H 0.032 0.968 37 H 0.034 0.966 38 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 3.042 1.835 18.565 18.902 hybrid contribution -1.302 -0.256 -1.049 1.692 sum 1.740 1.579 17.516 17.673 Atomic orbital electron populations 1.21812 0.94567 1.02089 1.02377 1.21968 0.96171 1.01554 0.95215 0.89442 1.22608 0.81125 0.99476 0.97630 1.87909 1.20213 1.76473 1.45699 1.22630 0.99057 0.94432 0.85536 1.22218 0.95802 1.02612 0.97657 1.21539 0.95258 0.95595 0.89636 0.94067 1.60612 1.36458 1.31633 1.03211 1.22168 1.00280 0.94067 0.90398 1.21624 0.99561 0.99207 0.94092 1.19069 0.97081 0.94394 0.91056 1.21301 1.45210 0.95447 0.93671 0.92616 1.25035 0.95587 0.94902 0.99011 1.69979 1.49630 1.09132 1.24905 0.86540 0.78249 0.80287 0.82964 1.19714 1.21009 1.21047 0.92613 0.92126 0.91846 0.93353 0.88911 0.93413 0.88778 0.90730 0.90298 0.84164 0.95877 0.91557 0.92549 0.93724 0.96840 0.96599 0.93103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 9.02 37.16 0.34 -1.07 16 2 C -0.13 -1.37 2.55 -90.48 -0.23 -1.60 16 3 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 4 C 0.07 0.68 6.13 37.21 0.23 0.91 16 5 O -0.38 -4.53 10.77 -35.23 -0.38 -4.91 16 6 C 0.06 0.64 6.84 37.20 0.25 0.90 16 7 C -0.14 -1.76 5.63 -26.59 -0.15 -1.91 16 8 C 0.09 1.13 2.02 -67.53 -0.14 1.00 16 9 H 0.04 0.54 7.80 -51.93 -0.41 0.14 16 10 N -0.69 -10.18 6.31 -106.53 -0.67 -10.86 16 11 C 0.06 1.04 5.49 -3.82 -0.02 1.02 16 12 C -0.11 -2.25 5.41 -26.73 -0.14 -2.40 16 13 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16 14 C -0.52 -14.93 9.11 -34.44 -0.31 -15.24 16 15 H 0.06 1.57 7.74 -52.48 -0.41 1.16 16 16 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 17 N -0.90 -27.28 13.29 55.43 0.74 -26.54 16 18 Si 0.89 21.89 29.54 -169.99 -5.02 16.87 16 19 H -0.27 -6.55 7.11 56.52 0.40 -6.14 16 20 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 21 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 22 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 23 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 24 H 0.06 0.62 6.36 -51.93 -0.33 0.29 16 25 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 26 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.07 0.94 7.56 -51.93 -0.39 0.55 16 30 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 31 H 0.34 4.72 6.38 -39.29 -0.25 4.47 16 32 H 0.02 0.41 8.06 -51.93 -0.42 -0.01 16 33 H 0.07 1.19 7.52 -51.93 -0.39 0.80 16 34 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 35 H 0.04 0.92 8.14 -51.93 -0.42 0.49 16 36 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 38 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 301.28 15.07 4.54 4.54 Total: -1.00 -30.57 301.28 -8.01 -38.59 By element: Atomic # 1 Polarization: 5.57 SS G_CDS: -6.80 Total: -1.24 kcal Atomic # 6 Polarization: -16.04 SS G_CDS: -0.41 Total: -16.45 kcal Atomic # 7 Polarization: -37.46 SS G_CDS: 0.06 Total: -37.40 kcal Atomic # 8 Polarization: -4.53 SS G_CDS: -0.38 Total: -4.91 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -30.57 -8.01 -38.59 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300830125.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.831 kcal (2) G-P(sol) polarization free energy of solvation -30.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds