Wall clock time and date at job start Mon Mar 30 2020 03:36:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 109.57235 * 2 1 4 4 C 1.53098 * 109.59864 * 120.11713 * 2 1 3 5 5 O 1.42902 * 109.48860 * 177.42493 * 4 2 1 6 6 C 1.42908 * 114.09214 * 298.89088 * 5 4 2 7 7 C 1.53084 * 109.41905 * 61.15895 * 6 5 4 8 8 C 1.53174 * 109.52164 * 239.84242 * 2 1 3 9 9 H 1.09003 * 109.54791 * 303.06680 * 8 2 1 10 10 N 1.46907 * 109.54523 * 63.24653 * 8 2 1 11 11 C 1.46895 * 110.99969 * 204.82543 * 10 8 2 12 12 C 1.53005 * 109.47071 * 180.02562 * 11 10 8 13 13 C 1.53004 * 109.46983 * 179.97438 * 12 11 10 14 14 C 1.50695 * 109.46637 * 179.97438 * 13 12 11 15 15 H 1.08004 * 120.00546 * 0.27598 * 14 13 12 16 16 C 1.37885 * 119.99721 * 179.97438 * 14 13 12 17 17 N 1.31514 * 120.00035 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99853 * 179.97438 * 16 14 13 19 19 H 1.48494 * 109.47228 * 0.02562 * 18 16 14 20 20 H 1.48501 * 109.46793 * 120.00131 * 18 16 14 21 21 H 1.48500 * 109.47000 * 240.00224 * 18 16 14 22 22 H 1.09003 * 109.47148 * 180.15692 * 1 2 3 23 23 H 1.08994 * 109.46987 * 300.15677 * 1 2 3 24 24 H 1.09001 * 109.47410 * 60.15950 * 1 2 3 25 25 H 1.09003 * 109.40721 * 57.44354 * 4 2 1 26 26 H 1.09003 * 109.49197 * 297.45828 * 4 2 1 27 27 H 1.08999 * 109.47921 * 301.16651 * 6 5 4 28 28 H 1.09005 * 109.47742 * 181.13853 * 6 5 4 29 29 H 1.08996 * 109.52545 * 182.48448 * 7 6 5 30 30 H 1.08998 * 109.52583 * 62.29077 * 7 6 5 31 31 H 1.00902 * 110.99728 * 328.77361 * 10 8 2 32 32 H 1.08997 * 109.47605 * 59.99330 * 11 10 8 33 33 H 1.09004 * 109.47210 * 299.99690 * 11 10 8 34 34 H 1.09000 * 109.46931 * 59.99758 * 12 11 10 35 35 H 1.08997 * 109.46785 * 299.99237 * 12 11 10 36 36 H 1.08992 * 109.47421 * 59.99948 * 13 12 11 37 37 H 1.08997 * 109.46955 * 299.99401 * 13 12 11 38 38 H 0.97000 * 119.99706 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8952 1.0270 0.0000 4 6 2.0436 -0.7237 1.2476 5 8 3.4713 -0.7749 1.2152 6 6 4.0044 -1.4834 0.0945 7 6 3.5716 -0.7890 -1.1994 8 6 2.0419 -0.7253 -1.2483 9 1 1.6355 -1.7364 -1.2750 10 7 1.6188 0.0063 -2.4499 11 6 1.5512 -0.8874 -3.6138 12 6 1.1087 -0.0912 -4.8432 13 6 1.0389 -1.0220 -6.0555 14 6 0.6026 -0.2379 -7.2662 15 1 0.4000 0.8196 -7.1806 16 6 0.4679 -0.8691 -8.4846 17 7 0.7198 -2.1556 -8.5901 18 14 -0.0737 0.1027 -9.9852 19 1 -0.2931 1.5209 -9.6037 20 1 0.9796 0.0287 -11.0294 21 1 -1.3375 -0.4690 -10.5154 22 1 -0.3633 -1.0277 0.0028 23 1 -0.3633 0.5162 0.8885 24 1 -0.3634 0.5113 -0.8914 25 1 1.6439 -1.7376 1.2684 26 1 1.7192 -0.1867 2.1389 27 1 3.6304 -2.5072 0.1003 28 1 5.0927 -1.4935 0.1550 29 1 3.9402 -1.3528 -2.0563 30 1 3.9792 0.2216 -1.2244 31 1 0.7356 0.4702 -2.2985 32 1 0.8335 -1.6843 -3.4189 33 1 2.5345 -1.3209 -3.7967 34 1 1.8268 0.7053 -5.0379 35 1 0.1256 0.3424 -4.6606 36 1 0.3211 -1.8188 -5.8611 37 1 2.0223 -1.4553 -6.2380 38 1 0.6247 -2.5997 -9.4472 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000300830125.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:36:59 Heat of formation + Delta-G solvation = -95.498675 kcal Electronic energy + Delta-G solvation = -15913.742222 eV Core-core repulsion = 13368.031882 eV Total energy + Delta-G solvation = -2545.710340 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.69379 -37.77995 -35.89741 -34.41231 -33.13471 -31.60066 -28.17710 -27.66289 -25.26553 -23.76240 -23.08958 -22.01168 -20.81845 -18.50326 -17.43915 -17.13319 -16.58155 -16.51189 -16.04732 -15.62173 -15.45899 -14.69354 -14.44287 -14.33768 -13.78925 -13.47184 -13.45870 -12.99867 -12.98091 -12.78877 -12.48013 -12.32555 -12.24164 -11.97622 -11.59956 -11.48796 -11.43895 -11.26422 -11.02960 -10.57184 -10.48919 -9.40891 -8.21476 -6.32612 1.39559 1.39991 1.53657 2.40288 2.92161 3.11777 3.14628 3.65681 3.83004 3.88187 4.15593 4.20946 4.27816 4.35161 4.40804 4.48499 4.60675 4.67489 4.68612 4.77238 4.86769 4.89477 4.94136 5.04260 5.11796 5.15854 5.22943 5.25617 5.36258 5.50894 5.72658 5.84061 6.06383 6.23156 6.25849 6.47162 6.84341 7.36877 8.90747 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.055117 B = 0.004298 C = 0.004130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 507.886062 B = 6513.549476 C = 6777.824370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.123 4.123 3 H 0.079 0.921 4 C 0.067 3.933 5 O -0.399 6.399 6 C 0.063 3.937 7 C -0.143 4.143 8 C 0.087 3.913 9 H 0.039 0.961 10 N -0.687 5.687 11 C 0.074 3.926 12 C -0.092 4.092 13 C 0.025 3.975 14 C -0.543 4.543 15 H 0.059 0.941 16 C -0.001 4.001 17 N -0.934 5.934 18 Si 0.966 3.034 19 H -0.262 1.262 20 H -0.278 1.278 21 H -0.277 1.277 22 H 0.056 0.944 23 H 0.079 0.921 24 H 0.055 0.945 25 H 0.056 0.944 26 H 0.112 0.888 27 H 0.056 0.944 28 H 0.108 0.892 29 H 0.065 0.935 30 H 0.068 0.932 31 H 0.345 0.655 32 H 0.022 0.978 33 H 0.059 0.941 34 H 0.051 0.949 35 H 0.050 0.950 36 H -0.009 1.009 37 H -0.009 1.009 38 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.806 2.530 19.498 19.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.142 4.142 3 H 0.098 0.902 4 C -0.010 4.010 5 O -0.318 6.318 6 C -0.014 4.014 7 C -0.182 4.182 8 C -0.023 4.023 9 H 0.057 0.943 10 N -0.321 5.321 11 C -0.055 4.055 12 C -0.130 4.130 13 C -0.013 4.013 14 C -0.581 4.581 15 H 0.077 0.923 16 C -0.199 4.199 17 N -0.574 5.574 18 Si 0.791 3.209 19 H -0.186 1.186 20 H -0.203 1.203 21 H -0.202 1.202 22 H 0.075 0.925 23 H 0.098 0.902 24 H 0.074 0.926 25 H 0.075 0.925 26 H 0.130 0.870 27 H 0.074 0.926 28 H 0.126 0.874 29 H 0.084 0.916 30 H 0.086 0.914 31 H 0.165 0.835 32 H 0.040 0.960 33 H 0.078 0.922 34 H 0.070 0.930 35 H 0.069 0.931 36 H 0.009 0.991 37 H 0.009 0.991 38 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 2.546 2.708 19.376 19.730 hybrid contribution -1.136 -0.547 -1.267 1.787 sum 1.411 2.161 18.109 18.292 Atomic orbital electron populations 1.21800 0.93440 1.02387 1.02979 1.21908 0.97052 1.00811 0.94440 0.90225 1.22757 0.80262 1.00157 0.97835 1.87895 1.21311 1.76690 1.45883 1.22667 0.99963 0.94438 0.84323 1.22199 0.95456 1.02084 0.98447 1.21640 0.95595 0.95490 0.89560 0.94346 1.60542 1.36929 1.31265 1.03321 1.21852 0.99660 0.93774 0.90245 1.21376 0.99919 0.98185 0.93540 1.18972 0.94796 0.94531 0.92964 1.21726 1.45557 0.95898 0.94928 0.92268 1.25997 0.95393 0.95961 1.02506 1.70104 1.50416 1.10908 1.26022 0.85378 0.77969 0.79033 0.78546 1.18613 1.20319 1.20224 0.92467 0.90206 0.92568 0.92523 0.86975 0.92551 0.87411 0.91618 0.91353 0.83460 0.96021 0.92201 0.92987 0.93097 0.99053 0.99084 0.92743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.45 9.02 71.98 0.65 -1.80 16 2 C -0.12 -2.39 2.55 -10.70 -0.03 -2.42 16 3 H 0.08 1.69 8.14 -2.39 -0.02 1.68 16 4 C 0.07 1.16 6.13 72.01 0.44 1.60 16 5 O -0.40 -8.65 10.77 -148.98 -1.60 -10.25 16 6 C 0.06 1.24 6.84 72.01 0.49 1.74 16 7 C -0.14 -3.40 5.63 30.68 0.17 -3.22 16 8 C 0.09 2.11 2.02 45.03 0.09 2.20 16 9 H 0.04 0.97 7.80 -2.39 -0.02 0.95 16 10 N -0.69 -19.92 6.31 -490.94 -3.10 -23.02 16 11 C 0.07 2.60 5.49 86.31 0.47 3.07 16 12 C -0.09 -3.91 5.41 30.60 0.17 -3.74 16 13 C 0.03 1.35 4.97 29.85 0.15 1.50 16 14 C -0.54 -31.60 9.11 25.60 0.23 -31.37 16 15 H 0.06 3.32 7.74 -2.91 -0.02 3.30 16 16 C 0.00 -0.06 5.46 84.66 0.46 0.40 16 17 N -0.93 -57.55 13.29 21.45 0.28 -57.26 16 18 Si 0.97 44.76 29.54 68.60 2.03 46.78 16 19 H -0.26 -11.60 7.11 99.48 0.71 -10.89 16 20 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 21 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 22 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 23 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 24 H 0.06 1.01 6.36 -2.39 -0.02 1.00 16 25 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 26 H 0.11 1.52 8.14 -2.39 -0.02 1.50 16 27 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 28 H 0.11 1.80 8.14 -2.38 -0.02 1.78 16 29 H 0.07 1.65 7.56 -2.39 -0.02 1.63 16 30 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 31 H 0.34 9.25 6.38 -89.69 -0.57 8.68 16 32 H 0.02 0.77 8.06 -2.39 -0.02 0.75 16 33 H 0.06 2.18 7.52 -2.38 -0.02 2.16 16 34 H 0.05 2.24 8.14 -2.39 -0.02 2.22 16 35 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 36 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 37 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 38 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 Total: -1.00 -65.00 301.28 1.34 -63.66 By element: Atomic # 1 Polarization: 11.69 SS G_CDS: 0.43 Total: 12.13 kcal Atomic # 6 Polarization: -35.34 SS G_CDS: 3.30 Total: -32.04 kcal Atomic # 7 Polarization: -77.46 SS G_CDS: -2.81 Total: -80.28 kcal Atomic # 8 Polarization: -8.65 SS G_CDS: -1.60 Total: -10.25 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.78 kcal Total: -65.00 1.34 -63.66 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300830125.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.841 kcal (2) G-P(sol) polarization free energy of solvation -65.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds