Wall clock time and date at job start Mon Mar 30 2020 03:37:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09007 * 109.57057 * 2 1 4 4 C 1.53086 * 109.52479 * 120.15543 * 2 1 3 5 5 O 1.42905 * 109.41181 * 62.30193 * 4 2 1 6 6 C 1.42895 * 114.09950 * 61.15750 * 5 4 2 7 7 C 1.53091 * 109.41453 * 298.84218 * 6 5 4 8 8 C 1.53172 * 109.16327 * 57.60843 * 7 6 5 9 9 H 1.09001 * 109.54113 * 62.97571 * 8 7 6 10 10 N 1.46905 * 109.54320 * 183.15084 * 8 7 6 11 11 C 1.46902 * 110.99800 * 275.00174 * 10 8 7 12 12 C 1.53006 * 109.46626 * 180.02562 * 11 10 8 13 13 C 1.52999 * 109.46623 * 179.97438 * 12 11 10 14 14 C 1.50706 * 109.46953 * 179.97438 * 13 12 11 15 15 H 1.07999 * 119.99816 * 0.02562 * 14 13 12 16 16 C 1.37876 * 120.00344 * 180.02562 * 14 13 12 17 17 N 1.31514 * 119.99769 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 120.00300 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.46691 * 0.02562 * 18 16 14 20 20 H 1.48500 * 109.46740 * 119.99592 * 18 16 14 21 21 H 1.48497 * 109.47025 * 239.99950 * 18 16 14 22 22 H 1.09007 * 109.46921 * 180.15304 * 1 2 3 23 23 H 1.08994 * 109.47393 * 300.15278 * 1 2 3 24 24 H 1.08998 * 109.47569 * 60.16034 * 1 2 3 25 25 H 1.09001 * 109.48542 * 302.31951 * 4 2 1 26 26 H 1.08999 * 109.48572 * 182.28221 * 4 2 1 27 27 H 1.09001 * 109.47973 * 178.85529 * 6 5 4 28 28 H 1.09004 * 109.48868 * 58.83423 * 6 5 4 29 29 H 1.08996 * 109.52437 * 297.69735 * 7 6 5 30 30 H 1.09004 * 109.57061 * 177.54865 * 7 6 5 31 31 H 1.00904 * 110.99696 * 151.04602 * 10 8 7 32 32 H 1.08993 * 109.47737 * 60.00169 * 11 10 8 33 33 H 1.09000 * 109.47263 * 299.99731 * 11 10 8 34 34 H 1.09000 * 109.47050 * 299.99824 * 12 11 10 35 35 H 1.09001 * 109.46801 * 59.99937 * 12 11 10 36 36 H 1.09000 * 109.47486 * 299.99829 * 13 12 11 37 37 H 1.09001 * 109.47362 * 60.00551 * 13 12 11 38 38 H 0.97000 * 120.00540 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8951 1.0271 0.0000 4 6 2.0416 -0.7248 1.2476 5 8 1.6099 -2.0867 1.2162 6 6 2.0971 -2.8276 0.0956 7 6 1.5877 -2.1872 -1.1982 8 6 2.0419 -0.7252 -1.2483 9 1 3.1307 -0.6824 -1.2757 10 7 1.4943 -0.0814 -2.4499 11 6 2.3558 -0.3225 -3.6152 12 6 1.7545 0.3624 -4.8442 13 6 2.6520 0.1118 -6.0577 14 6 2.0595 0.7859 -7.2684 15 1 1.1354 1.3381 -7.1809 16 6 2.6970 0.6976 -8.4877 17 7 3.8225 0.0256 -8.5941 18 14 1.9622 1.5325 -9.9886 19 1 0.7023 2.2190 -9.6058 20 1 2.9257 2.5286 -10.5222 21 1 1.6749 0.5141 -11.0304 22 1 -0.3633 -1.0277 0.0027 23 1 -0.3634 0.5162 0.8885 24 1 -0.3634 0.5113 -0.8914 25 1 1.6453 -0.2383 2.1389 26 1 3.1308 -0.6892 1.2677 27 1 1.7409 -3.8559 0.1571 28 1 3.1871 -2.8197 0.1006 29 1 0.4990 -2.2315 -1.2225 30 1 1.9933 -2.7242 -2.0557 31 1 1.3571 0.9069 -2.2999 32 1 2.4303 -1.3947 -3.7964 33 1 3.3489 0.0834 -3.4230 34 1 0.7612 -0.0431 -5.0365 35 1 1.6803 1.4346 -4.6627 36 1 3.6451 0.5177 -5.8651 37 1 2.7265 -0.9603 -6.2393 38 1 4.2713 -0.0362 -9.4518 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000300830126.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:37:01 Heat of formation + Delta-G solvation = -73.398429 kcal Electronic energy + Delta-G solvation = -15967.735650 eV Core-core repulsion = 13422.983649 eV Total energy + Delta-G solvation = -2544.752001 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.89866 -36.49387 -34.17505 -32.72661 -31.68585 -30.14653 -26.92851 -26.26157 -23.82078 -23.25125 -21.92809 -20.21320 -18.96007 -16.54146 -16.32676 -16.10336 -15.35850 -15.20583 -15.01525 -14.44944 -13.86519 -13.50202 -13.28025 -12.79808 -12.29999 -12.06764 -11.94191 -11.67138 -11.55911 -11.29724 -11.23369 -10.85617 -10.61172 -10.49748 -10.41590 -10.23944 -9.69321 -9.67999 -9.28928 -9.02260 -8.34012 -8.17223 -5.98900 -4.00911 3.31858 3.39167 3.43834 3.74799 4.27277 4.48331 4.55322 4.74824 4.86922 5.01567 5.15340 5.32440 5.37035 5.42459 5.47958 5.50339 5.62343 5.71699 5.79760 5.83473 5.93776 6.01823 6.10083 6.22474 6.33418 6.43765 6.72537 6.78607 7.06565 7.14485 7.35892 7.63318 7.69719 7.84395 8.01612 8.45032 9.06569 9.63185 11.12640 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.061137 B = 0.004245 C = 0.004103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 457.880218 B = 6594.615601 C = 6823.381115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.130 4.130 3 H 0.075 0.925 4 C 0.068 3.932 5 O -0.381 6.381 6 C 0.060 3.940 7 C -0.145 4.145 8 C 0.090 3.910 9 H 0.040 0.960 10 N -0.683 5.683 11 C 0.059 3.941 12 C -0.106 4.106 13 C 0.021 3.979 14 C -0.518 4.518 15 H 0.056 0.944 16 C 0.055 3.945 17 N -0.897 5.897 18 Si 0.892 3.108 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.284 1.284 22 H 0.062 0.938 23 H 0.046 0.954 24 H 0.065 0.935 25 H 0.093 0.907 26 H 0.047 0.953 27 H 0.093 0.907 28 H 0.047 0.953 29 H 0.081 0.919 30 H 0.072 0.928 31 H 0.338 0.662 32 H 0.066 0.934 33 H 0.023 0.977 34 H 0.056 0.944 35 H 0.044 0.956 36 H 0.013 0.987 37 H 0.016 0.984 38 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.147 -2.184 18.647 19.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.149 4.149 3 H 0.093 0.907 4 C -0.010 4.010 5 O -0.300 6.300 6 C -0.017 4.017 7 C -0.184 4.184 8 C -0.021 4.021 9 H 0.058 0.942 10 N -0.314 5.314 11 C -0.069 4.069 12 C -0.144 4.144 13 C -0.016 4.016 14 C -0.556 4.556 15 H 0.074 0.926 16 C -0.145 4.145 17 N -0.537 5.537 18 Si 0.720 3.280 19 H -0.197 1.197 20 H -0.211 1.211 21 H -0.210 1.210 22 H 0.081 0.919 23 H 0.065 0.935 24 H 0.084 0.916 25 H 0.111 0.889 26 H 0.065 0.935 27 H 0.112 0.888 28 H 0.065 0.935 29 H 0.100 0.900 30 H 0.091 0.909 31 H 0.156 0.844 32 H 0.084 0.916 33 H 0.041 0.959 34 H 0.074 0.926 35 H 0.063 0.937 36 H 0.031 0.969 37 H 0.034 0.966 38 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -3.558 -2.832 18.506 19.056 hybrid contribution 0.748 1.163 -1.038 1.729 sum -2.810 -1.669 17.467 17.770 Atomic orbital electron populations 1.21684 0.93546 1.02674 1.01362 1.21955 0.98274 0.99491 0.95151 0.90650 1.22580 0.98096 0.82536 0.97744 1.87902 1.74196 1.22326 1.45582 1.22619 0.97846 0.95579 0.85627 1.22237 1.03065 0.95469 0.97587 1.21510 0.96309 0.94571 0.89666 0.94185 1.60603 1.50276 1.17428 1.03092 1.22175 0.93387 1.00958 0.90427 1.21618 1.00325 0.98417 0.94077 1.19073 0.94431 0.97054 0.91064 1.21300 1.08257 1.32440 0.93617 0.92620 1.25032 0.94975 0.95511 0.99024 1.69976 1.17001 1.41819 1.24861 0.86540 0.79219 0.79313 0.82971 1.19714 1.21058 1.21001 0.91867 0.93510 0.91640 0.88918 0.93452 0.88838 0.93487 0.90009 0.90898 0.84391 0.91562 0.95917 0.92556 0.93717 0.96861 0.96605 0.93103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.44 8.59 37.16 0.32 -1.13 16 2 C -0.13 -1.36 2.63 -90.49 -0.24 -1.59 16 3 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 4 C 0.07 0.66 6.25 37.20 0.23 0.89 16 5 O -0.38 -4.39 10.18 -35.23 -0.36 -4.75 16 6 C 0.06 0.63 6.84 37.20 0.25 0.89 16 7 C -0.15 -1.74 5.26 -26.60 -0.14 -1.88 16 8 C 0.09 1.11 2.27 -67.53 -0.15 0.96 16 9 H 0.04 0.52 7.81 -51.93 -0.41 0.12 16 10 N -0.68 -9.90 5.54 -106.53 -0.59 -10.49 16 11 C 0.06 1.03 5.49 -3.82 -0.02 1.01 16 12 C -0.11 -2.23 5.41 -26.73 -0.14 -2.37 16 13 C 0.02 0.56 4.97 -27.88 -0.14 0.42 16 14 C -0.52 -14.91 9.11 -34.44 -0.31 -15.23 16 15 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 16 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 17 N -0.90 -27.28 13.29 55.43 0.74 -26.55 16 18 Si 0.89 21.89 29.54 -169.99 -5.02 16.87 16 19 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 20 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 21 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 22 H 0.06 0.74 6.14 -51.93 -0.32 0.42 16 23 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 24 H 0.06 0.75 7.31 -51.93 -0.38 0.37 16 25 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 26 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 28 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.08 1.04 6.63 -51.93 -0.34 0.70 16 30 H 0.07 0.91 7.55 -51.93 -0.39 0.52 16 31 H 0.34 4.62 8.06 -39.29 -0.32 4.31 16 32 H 0.07 1.18 7.51 -51.93 -0.39 0.79 16 33 H 0.02 0.40 8.06 -51.93 -0.42 -0.02 16 34 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 35 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 298.69 15.07 4.50 4.50 Total: -1.00 -30.35 298.69 -7.91 -38.26 By element: Atomic # 1 Polarization: 5.41 SS G_CDS: -6.73 Total: -1.32 kcal Atomic # 6 Polarization: -16.08 SS G_CDS: -0.44 Total: -16.52 kcal Atomic # 7 Polarization: -37.18 SS G_CDS: 0.15 Total: -37.03 kcal Atomic # 8 Polarization: -4.39 SS G_CDS: -0.36 Total: -4.75 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -30.35 -7.91 -38.26 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300830126.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.140 kcal (2) G-P(sol) polarization free energy of solvation -30.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds