Wall clock time and date at job start Mon Mar 30 2020 03:37:01
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 H 1.09007 * 109.57057 * 2 1
4 4 C 1.53086 * 109.52479 * 120.15543 * 2 1 3
5 5 O 1.42905 * 109.41181 * 62.30193 * 4 2 1
6 6 C 1.42895 * 114.09950 * 61.15750 * 5 4 2
7 7 C 1.53091 * 109.41453 * 298.84218 * 6 5 4
8 8 C 1.53172 * 109.16327 * 57.60843 * 7 6 5
9 9 H 1.09001 * 109.54113 * 62.97571 * 8 7 6
10 10 N 1.46905 * 109.54320 * 183.15084 * 8 7 6
11 11 C 1.46902 * 110.99800 * 275.00174 * 10 8 7
12 12 C 1.53006 * 109.46626 * 180.02562 * 11 10 8
13 13 C 1.52999 * 109.46623 * 179.97438 * 12 11 10
14 14 C 1.50706 * 109.46953 * 179.97438 * 13 12 11
15 15 H 1.07999 * 119.99816 * 0.02562 * 14 13 12
16 16 C 1.37876 * 120.00344 * 180.02562 * 14 13 12
17 17 N 1.31514 * 119.99769 * 359.97438 * 16 14 13
18 18 Si 1.86800 * 120.00300 * 179.97438 * 16 14 13
19 19 H 1.48498 * 109.46691 * 0.02562 * 18 16 14
20 20 H 1.48500 * 109.46740 * 119.99592 * 18 16 14
21 21 H 1.48497 * 109.47025 * 239.99950 * 18 16 14
22 22 H 1.09007 * 109.46921 * 180.15304 * 1 2 3
23 23 H 1.08994 * 109.47393 * 300.15278 * 1 2 3
24 24 H 1.08998 * 109.47569 * 60.16034 * 1 2 3
25 25 H 1.09001 * 109.48542 * 302.31951 * 4 2 1
26 26 H 1.08999 * 109.48572 * 182.28221 * 4 2 1
27 27 H 1.09001 * 109.47973 * 178.85529 * 6 5 4
28 28 H 1.09004 * 109.48868 * 58.83423 * 6 5 4
29 29 H 1.08996 * 109.52437 * 297.69735 * 7 6 5
30 30 H 1.09004 * 109.57061 * 177.54865 * 7 6 5
31 31 H 1.00904 * 110.99696 * 151.04602 * 10 8 7
32 32 H 1.08993 * 109.47737 * 60.00169 * 11 10 8
33 33 H 1.09000 * 109.47263 * 299.99731 * 11 10 8
34 34 H 1.09000 * 109.47050 * 299.99824 * 12 11 10
35 35 H 1.09001 * 109.46801 * 59.99937 * 12 11 10
36 36 H 1.09000 * 109.47486 * 299.99829 * 13 12 11
37 37 H 1.09001 * 109.47362 * 60.00551 * 13 12 11
38 38 H 0.97000 * 120.00540 * 180.02562 * 17 16 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8951 1.0271 0.0000
4 6 2.0416 -0.7248 1.2476
5 8 1.6099 -2.0867 1.2162
6 6 2.0971 -2.8276 0.0956
7 6 1.5877 -2.1872 -1.1982
8 6 2.0419 -0.7252 -1.2483
9 1 3.1307 -0.6824 -1.2757
10 7 1.4943 -0.0814 -2.4499
11 6 2.3558 -0.3225 -3.6152
12 6 1.7545 0.3624 -4.8442
13 6 2.6520 0.1118 -6.0577
14 6 2.0595 0.7859 -7.2684
15 1 1.1354 1.3381 -7.1809
16 6 2.6970 0.6976 -8.4877
17 7 3.8225 0.0256 -8.5941
18 14 1.9622 1.5325 -9.9886
19 1 0.7023 2.2190 -9.6058
20 1 2.9257 2.5286 -10.5222
21 1 1.6749 0.5141 -11.0304
22 1 -0.3633 -1.0277 0.0027
23 1 -0.3634 0.5162 0.8885
24 1 -0.3634 0.5113 -0.8914
25 1 1.6453 -0.2383 2.1389
26 1 3.1308 -0.6892 1.2677
27 1 1.7409 -3.8559 0.1571
28 1 3.1871 -2.8197 0.1006
29 1 0.4990 -2.2315 -1.2225
30 1 1.9933 -2.7242 -2.0557
31 1 1.3571 0.9069 -2.2999
32 1 2.4303 -1.3947 -3.7964
33 1 3.3489 0.0834 -3.4230
34 1 0.7612 -0.0431 -5.0365
35 1 1.6803 1.4346 -4.6627
36 1 3.6451 0.5177 -5.8651
37 1 2.7265 -0.9603 -6.2393
38 1 4.2713 -0.0362 -9.4518
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000300830126.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:37:01
Heat of formation + Delta-G solvation = -73.398429 kcal
Electronic energy + Delta-G solvation = -15967.735650 eV
Core-core repulsion = 13422.983649 eV
Total energy + Delta-G solvation = -2544.752001 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 227.163 amu
Computer time = 0.35 seconds
Orbital eigenvalues (eV)
-39.89866 -36.49387 -34.17505 -32.72661 -31.68585 -30.14653 -26.92851 -26.26157
-23.82078 -23.25125 -21.92809 -20.21320 -18.96007 -16.54146 -16.32676 -16.10336
-15.35850 -15.20583 -15.01525 -14.44944 -13.86519 -13.50202 -13.28025 -12.79808
-12.29999 -12.06764 -11.94191 -11.67138 -11.55911 -11.29724 -11.23369 -10.85617
-10.61172 -10.49748 -10.41590 -10.23944 -9.69321 -9.67999 -9.28928 -9.02260
-8.34012 -8.17223 -5.98900 -4.00911 3.31858 3.39167 3.43834 3.74799
4.27277 4.48331 4.55322 4.74824 4.86922 5.01567 5.15340 5.32440
5.37035 5.42459 5.47958 5.50339 5.62343 5.71699 5.79760 5.83473
5.93776 6.01823 6.10083 6.22474 6.33418 6.43765 6.72537 6.78607
7.06565 7.14485 7.35892 7.63318 7.69719 7.84395 8.01612 8.45032
9.06569 9.63185 11.12640
Molecular weight = 227.16amu
Principal moments of inertia in cm(-1)
A = 0.061137 B = 0.004245 C = 0.004103
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 457.880218 B = 6594.615601 C = 6823.381115
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.135 4.135
2 C -0.130 4.130
3 H 0.075 0.925
4 C 0.068 3.932
5 O -0.381 6.381
6 C 0.060 3.940
7 C -0.145 4.145
8 C 0.090 3.910
9 H 0.040 0.960
10 N -0.683 5.683
11 C 0.059 3.941
12 C -0.106 4.106
13 C 0.021 3.979
14 C -0.518 4.518
15 H 0.056 0.944
16 C 0.055 3.945
17 N -0.897 5.897
18 Si 0.892 3.108
19 H -0.273 1.273
20 H -0.284 1.284
21 H -0.284 1.284
22 H 0.062 0.938
23 H 0.046 0.954
24 H 0.065 0.935
25 H 0.093 0.907
26 H 0.047 0.953
27 H 0.093 0.907
28 H 0.047 0.953
29 H 0.081 0.919
30 H 0.072 0.928
31 H 0.338 0.662
32 H 0.066 0.934
33 H 0.023 0.977
34 H 0.056 0.944
35 H 0.044 0.956
36 H 0.013 0.987
37 H 0.016 0.984
38 H 0.259 0.741
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.147 -2.184 18.647 19.036
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.193 4.193
2 C -0.149 4.149
3 H 0.093 0.907
4 C -0.010 4.010
5 O -0.300 6.300
6 C -0.017 4.017
7 C -0.184 4.184
8 C -0.021 4.021
9 H 0.058 0.942
10 N -0.314 5.314
11 C -0.069 4.069
12 C -0.144 4.144
13 C -0.016 4.016
14 C -0.556 4.556
15 H 0.074 0.926
16 C -0.145 4.145
17 N -0.537 5.537
18 Si 0.720 3.280
19 H -0.197 1.197
20 H -0.211 1.211
21 H -0.210 1.210
22 H 0.081 0.919
23 H 0.065 0.935
24 H 0.084 0.916
25 H 0.111 0.889
26 H 0.065 0.935
27 H 0.112 0.888
28 H 0.065 0.935
29 H 0.100 0.900
30 H 0.091 0.909
31 H 0.156 0.844
32 H 0.084 0.916
33 H 0.041 0.959
34 H 0.074 0.926
35 H 0.063 0.937
36 H 0.031 0.969
37 H 0.034 0.966
38 H 0.069 0.931
Dipole moment (debyes) X Y Z Total
from point charges -3.558 -2.832 18.506 19.056
hybrid contribution 0.748 1.163 -1.038 1.729
sum -2.810 -1.669 17.467 17.770
Atomic orbital electron populations
1.21684 0.93546 1.02674 1.01362 1.21955 0.98274 0.99491 0.95151
0.90650 1.22580 0.98096 0.82536 0.97744 1.87902 1.74196 1.22326
1.45582 1.22619 0.97846 0.95579 0.85627 1.22237 1.03065 0.95469
0.97587 1.21510 0.96309 0.94571 0.89666 0.94185 1.60603 1.50276
1.17428 1.03092 1.22175 0.93387 1.00958 0.90427 1.21618 1.00325
0.98417 0.94077 1.19073 0.94431 0.97054 0.91064 1.21300 1.08257
1.32440 0.93617 0.92620 1.25032 0.94975 0.95511 0.99024 1.69976
1.17001 1.41819 1.24861 0.86540 0.79219 0.79313 0.82971 1.19714
1.21058 1.21001 0.91867 0.93510 0.91640 0.88918 0.93452 0.88838
0.93487 0.90009 0.90898 0.84391 0.91562 0.95917 0.92556 0.93717
0.96861 0.96605 0.93103
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.44 8.59 37.16 0.32 -1.13 16
2 C -0.13 -1.36 2.63 -90.49 -0.24 -1.59 16
3 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16
4 C 0.07 0.66 6.25 37.20 0.23 0.89 16
5 O -0.38 -4.39 10.18 -35.23 -0.36 -4.75 16
6 C 0.06 0.63 6.84 37.20 0.25 0.89 16
7 C -0.15 -1.74 5.26 -26.60 -0.14 -1.88 16
8 C 0.09 1.11 2.27 -67.53 -0.15 0.96 16
9 H 0.04 0.52 7.81 -51.93 -0.41 0.12 16
10 N -0.68 -9.90 5.54 -106.53 -0.59 -10.49 16
11 C 0.06 1.03 5.49 -3.82 -0.02 1.01 16
12 C -0.11 -2.23 5.41 -26.73 -0.14 -2.37 16
13 C 0.02 0.56 4.97 -27.88 -0.14 0.42 16
14 C -0.52 -14.91 9.11 -34.44 -0.31 -15.23 16
15 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16
16 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16
17 N -0.90 -27.28 13.29 55.43 0.74 -26.55 16
18 Si 0.89 21.89 29.54 -169.99 -5.02 16.87 16
19 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16
20 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16
21 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16
22 H 0.06 0.74 6.14 -51.93 -0.32 0.42 16
23 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16
24 H 0.06 0.75 7.31 -51.93 -0.38 0.37 16
25 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16
26 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16
27 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16
28 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16
29 H 0.08 1.04 6.63 -51.93 -0.34 0.70 16
30 H 0.07 0.91 7.55 -51.93 -0.39 0.52 16
31 H 0.34 4.62 8.06 -39.29 -0.32 4.31 16
32 H 0.07 1.18 7.51 -51.93 -0.39 0.79 16
33 H 0.02 0.40 8.06 -51.93 -0.42 -0.02 16
34 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16
35 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16
36 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16
37 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16
38 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16
LS Contribution 298.69 15.07 4.50 4.50
Total: -1.00 -30.35 298.69 -7.91 -38.26
By element:
Atomic # 1 Polarization: 5.41 SS G_CDS: -6.73 Total: -1.32 kcal
Atomic # 6 Polarization: -16.08 SS G_CDS: -0.44 Total: -16.52 kcal
Atomic # 7 Polarization: -37.18 SS G_CDS: 0.15 Total: -37.03 kcal
Atomic # 8 Polarization: -4.39 SS G_CDS: -0.36 Total: -4.75 kcal
Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal
Total LS contribution 4.50 Total: 4.50 kcal
Total: -30.35 -7.91 -38.26 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000300830126.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -35.140 kcal
(2) G-P(sol) polarization free energy of solvation -30.353 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.492 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.906 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.259 kcal
(6) G-S(sol) free energy of system = (1) + (5) -73.398 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.35 seconds