Wall clock time and date at job start Mon Mar 30 2020 03:37:01
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 H 1.09007 * 109.57057 * 2 1
4 4 C 1.53086 * 109.52479 * 120.15543 * 2 1 3
5 5 O 1.42905 * 109.41181 * 62.30193 * 4 2 1
6 6 C 1.42895 * 114.09950 * 61.15750 * 5 4 2
7 7 C 1.53091 * 109.41453 * 298.84218 * 6 5 4
8 8 C 1.53172 * 109.16327 * 57.60843 * 7 6 5
9 9 H 1.09001 * 109.54113 * 62.97571 * 8 7 6
10 10 N 1.46905 * 109.54320 * 183.15084 * 8 7 6
11 11 C 1.46902 * 110.99800 * 275.00174 * 10 8 7
12 12 C 1.53006 * 109.46626 * 180.02562 * 11 10 8
13 13 C 1.52999 * 109.46623 * 179.97438 * 12 11 10
14 14 C 1.50706 * 109.46953 * 179.97438 * 13 12 11
15 15 H 1.07999 * 119.99816 * 0.02562 * 14 13 12
16 16 C 1.37876 * 120.00344 * 180.02562 * 14 13 12
17 17 N 1.31514 * 119.99769 * 359.97438 * 16 14 13
18 18 Si 1.86800 * 120.00300 * 179.97438 * 16 14 13
19 19 H 1.48498 * 109.46691 * 0.02562 * 18 16 14
20 20 H 1.48500 * 109.46740 * 119.99592 * 18 16 14
21 21 H 1.48497 * 109.47025 * 239.99950 * 18 16 14
22 22 H 1.09007 * 109.46921 * 180.15304 * 1 2 3
23 23 H 1.08994 * 109.47393 * 300.15278 * 1 2 3
24 24 H 1.08998 * 109.47569 * 60.16034 * 1 2 3
25 25 H 1.09001 * 109.48542 * 302.31951 * 4 2 1
26 26 H 1.08999 * 109.48572 * 182.28221 * 4 2 1
27 27 H 1.09001 * 109.47973 * 178.85529 * 6 5 4
28 28 H 1.09004 * 109.48868 * 58.83423 * 6 5 4
29 29 H 1.08996 * 109.52437 * 297.69735 * 7 6 5
30 30 H 1.09004 * 109.57061 * 177.54865 * 7 6 5
31 31 H 1.00904 * 110.99696 * 151.04602 * 10 8 7
32 32 H 1.08993 * 109.47737 * 60.00169 * 11 10 8
33 33 H 1.09000 * 109.47263 * 299.99731 * 11 10 8
34 34 H 1.09000 * 109.47050 * 299.99824 * 12 11 10
35 35 H 1.09001 * 109.46801 * 59.99937 * 12 11 10
36 36 H 1.09000 * 109.47486 * 299.99829 * 13 12 11
37 37 H 1.09001 * 109.47362 * 60.00551 * 13 12 11
38 38 H 0.97000 * 120.00540 * 180.02562 * 17 16 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8951 1.0271 0.0000
4 6 2.0416 -0.7248 1.2476
5 8 1.6099 -2.0867 1.2162
6 6 2.0971 -2.8276 0.0956
7 6 1.5877 -2.1872 -1.1982
8 6 2.0419 -0.7252 -1.2483
9 1 3.1307 -0.6824 -1.2757
10 7 1.4943 -0.0814 -2.4499
11 6 2.3558 -0.3225 -3.6152
12 6 1.7545 0.3624 -4.8442
13 6 2.6520 0.1118 -6.0577
14 6 2.0595 0.7859 -7.2684
15 1 1.1354 1.3381 -7.1809
16 6 2.6970 0.6976 -8.4877
17 7 3.8225 0.0256 -8.5941
18 14 1.9622 1.5325 -9.9886
19 1 0.7023 2.2190 -9.6058
20 1 2.9257 2.5286 -10.5222
21 1 1.6749 0.5141 -11.0304
22 1 -0.3633 -1.0277 0.0027
23 1 -0.3634 0.5162 0.8885
24 1 -0.3634 0.5113 -0.8914
25 1 1.6453 -0.2383 2.1389
26 1 3.1308 -0.6892 1.2677
27 1 1.7409 -3.8559 0.1571
28 1 3.1871 -2.8197 0.1006
29 1 0.4990 -2.2315 -1.2225
30 1 1.9933 -2.7242 -2.0557
31 1 1.3571 0.9069 -2.2999
32 1 2.4303 -1.3947 -3.7964
33 1 3.3489 0.0834 -3.4230
34 1 0.7612 -0.0431 -5.0365
35 1 1.6803 1.4346 -4.6627
36 1 3.6451 0.5177 -5.8651
37 1 2.7265 -0.9603 -6.2393
38 1 4.2713 -0.0362 -9.4518
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000300830126.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:37:01
Heat of formation + Delta-G solvation = -93.080601 kcal
Electronic energy + Delta-G solvation = -15968.589133 eV
Core-core repulsion = 13422.983649 eV
Total energy + Delta-G solvation = -2545.605484 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 227.163 amu
Computer time = 0.40 seconds
Orbital eigenvalues (eV)
-40.79666 -37.71409 -35.83690 -34.31123 -32.85448 -31.63288 -28.18823 -27.62716
-25.22586 -24.24419 -23.33789 -21.96007 -19.90711 -18.50018 -17.44387 -17.06369
-16.56559 -16.46532 -16.19933 -16.00179 -15.29141 -14.64341 -14.55059 -14.08692
-13.79065 -13.50162 -13.46705 -12.87564 -12.81698 -12.55219 -12.48281 -12.33753
-12.22225 -12.11851 -11.58859 -11.48085 -11.31409 -11.20986 -10.99930 -10.57082
-10.45303 -9.38181 -8.21355 -6.32513 1.39611 1.39957 1.53657 2.40352
2.95091 3.11898 3.16227 3.66501 3.86822 4.01011 4.16147 4.20540
4.28530 4.36139 4.44844 4.56119 4.63927 4.69497 4.77152 4.80124
4.89839 4.93815 4.96943 5.08134 5.16596 5.21519 5.23535 5.33005
5.50816 5.54320 5.73301 5.84471 6.07058 6.25913 6.26893 6.48306
6.84572 7.37017 8.90875
Molecular weight = 227.16amu
Principal moments of inertia in cm(-1)
A = 0.061137 B = 0.004245 C = 0.004103
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 457.880218 B = 6594.615601 C = 6823.381115
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.132 4.132
2 C -0.125 4.125
3 H 0.087 0.913
4 C 0.065 3.935
5 O -0.394 6.394
6 C 0.063 3.937
7 C -0.143 4.143
8 C 0.087 3.913
9 H 0.037 0.963
10 N -0.682 5.682
11 C 0.074 3.926
12 C -0.091 4.091
13 C 0.025 3.975
14 C -0.543 4.543
15 H 0.059 0.941
16 C -0.001 4.001
17 N -0.934 5.934
18 Si 0.966 3.034
19 H -0.262 1.262
20 H -0.277 1.277
21 H -0.277 1.277
22 H 0.050 0.950
23 H 0.062 0.938
24 H 0.055 0.945
25 H 0.111 0.889
26 H 0.056 0.944
27 H 0.106 0.894
28 H 0.055 0.945
29 H 0.072 0.928
30 H 0.062 0.938
31 H 0.344 0.656
32 H 0.059 0.941
33 H 0.021 0.979
34 H 0.051 0.949
35 H 0.050 0.950
36 H -0.009 1.009
37 H -0.010 1.010
38 H 0.264 0.736
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.844 -1.408 19.446 19.872
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.189 4.189
2 C -0.144 4.144
3 H 0.106 0.894
4 C -0.012 4.012
5 O -0.313 6.313
6 C -0.014 4.014
7 C -0.182 4.182
8 C -0.023 4.023
9 H 0.055 0.945
10 N -0.313 5.313
11 C -0.055 4.055
12 C -0.129 4.129
13 C -0.013 4.013
14 C -0.581 4.581
15 H 0.077 0.923
16 C -0.199 4.199
17 N -0.575 5.575
18 Si 0.791 3.209
19 H -0.186 1.186
20 H -0.203 1.203
21 H -0.203 1.203
22 H 0.069 0.931
23 H 0.081 0.919
24 H 0.074 0.926
25 H 0.129 0.871
26 H 0.074 0.926
27 H 0.124 0.876
28 H 0.073 0.927
29 H 0.090 0.910
30 H 0.081 0.919
31 H 0.163 0.837
32 H 0.077 0.923
33 H 0.039 0.961
34 H 0.070 0.930
35 H 0.069 0.931
36 H 0.009 0.991
37 H 0.009 0.991
38 H 0.072 0.928
Dipole moment (debyes) X Y Z Total
from point charges -4.264 -2.052 19.327 19.898
hybrid contribution 0.980 0.904 -1.258 1.833
sum -3.284 -1.148 18.069 18.400
Atomic orbital electron populations
1.21638 0.93668 1.01934 1.01646 1.21943 0.98064 0.99984 0.94379
0.89429 1.22725 0.98751 0.81765 0.97916 1.87891 1.74548 1.23185
1.45700 1.22646 0.98263 0.95994 0.84496 1.22208 1.02406 0.95308
0.98256 1.21599 0.96143 0.94941 0.89585 0.94483 1.60528 1.49558
1.18141 1.03101 1.21853 0.93408 0.99958 0.90320 1.21365 0.98926
0.99149 0.93493 1.18980 0.94327 0.94985 0.93022 1.21728 1.08619
1.32848 0.94873 0.92258 1.25997 0.95303 0.96055 1.02526 1.70103
1.18395 1.43015 1.25972 0.85378 0.78708 0.78288 0.78556 1.18598
1.20255 1.20312 0.93093 0.91949 0.92611 0.87085 0.92595 0.87579
0.92715 0.90951 0.91943 0.83651 0.92279 0.96113 0.92978 0.93079
0.99111 0.99120 0.92751
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -2.58 8.59 71.98 0.62 -1.96 16
2 C -0.12 -2.35 2.63 -10.71 -0.03 -2.38 16
3 H 0.09 1.47 8.14 -2.38 -0.02 1.45 16
4 C 0.07 1.11 6.25 72.01 0.45 1.57 16
5 O -0.39 -8.30 10.18 -148.98 -1.52 -9.82 16
6 C 0.06 1.22 6.84 72.01 0.49 1.72 16
7 C -0.14 -3.33 5.26 30.68 0.16 -3.17 16
8 C 0.09 2.06 2.27 45.03 0.10 2.16 16
9 H 0.04 0.92 7.81 -2.39 -0.02 0.90 16
10 N -0.68 -19.16 5.54 -490.95 -2.72 -21.88 16
11 C 0.07 2.56 5.49 86.31 0.47 3.04 16
12 C -0.09 -3.84 5.41 30.60 0.17 -3.68 16
13 C 0.02 1.32 4.97 29.85 0.15 1.47 16
14 C -0.54 -31.55 9.11 25.60 0.23 -31.31 16
15 H 0.06 3.32 7.74 -2.91 -0.02 3.30 16
16 C 0.00 -0.08 5.46 84.65 0.46 0.39 16
17 N -0.93 -57.59 13.29 21.45 0.28 -57.31 16
18 Si 0.97 44.75 29.54 68.60 2.03 46.78 16
19 H -0.26 -11.59 7.11 99.48 0.71 -10.88 16
20 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16
21 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16
22 H 0.05 1.12 6.14 -2.38 -0.01 1.11 16
23 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16
24 H 0.05 1.19 7.31 -2.39 -0.02 1.17 16
25 H 0.11 1.49 8.14 -2.39 -0.02 1.48 16
26 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16
27 H 0.11 1.76 8.14 -2.39 -0.02 1.75 16
28 H 0.05 0.98 8.14 -2.38 -0.02 0.96 16
29 H 0.07 1.82 6.63 -2.39 -0.02 1.80 16
30 H 0.06 1.56 7.55 -2.39 -0.02 1.54 16
31 H 0.34 8.95 8.06 -89.69 -0.72 8.22 16
32 H 0.06 2.14 7.51 -2.39 -0.02 2.12 16
33 H 0.02 0.73 8.06 -2.39 -0.02 0.71 16
34 H 0.05 2.22 8.14 -2.39 -0.02 2.20 16
35 H 0.05 2.06 8.14 -2.39 -0.02 2.05 16
36 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16
37 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16
38 H 0.26 15.17 8.31 -92.71 -0.77 14.40 16
Total: -1.00 -64.57 298.69 1.64 -62.93
By element:
Atomic # 1 Polarization: 11.18 SS G_CDS: 0.29 Total: 11.46 kcal
Atomic # 6 Polarization: -35.45 SS G_CDS: 3.28 Total: -32.17 kcal
Atomic # 7 Polarization: -76.75 SS G_CDS: -2.44 Total: -79.19 kcal
Atomic # 8 Polarization: -8.30 SS G_CDS: -1.52 Total: -9.82 kcal
Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.78 kcal
Total: -64.57 1.64 -62.93 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000300830126.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -30.150 kcal
(2) G-P(sol) polarization free energy of solvation -64.573 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.723 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.642 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.931 kcal
(6) G-S(sol) free energy of system = (1) + (5) -93.081 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.40 seconds