Wall clock time and date at job start Mon Mar 30 2020 03:37:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09007 * 109.57057 * 2 1 4 4 C 1.53086 * 109.52479 * 120.15543 * 2 1 3 5 5 O 1.42905 * 109.41181 * 62.30193 * 4 2 1 6 6 C 1.42895 * 114.09950 * 61.15750 * 5 4 2 7 7 C 1.53091 * 109.41453 * 298.84218 * 6 5 4 8 8 C 1.53172 * 109.16327 * 57.60843 * 7 6 5 9 9 H 1.09001 * 109.54113 * 62.97571 * 8 7 6 10 10 N 1.46905 * 109.54320 * 183.15084 * 8 7 6 11 11 C 1.46902 * 110.99800 * 275.00174 * 10 8 7 12 12 C 1.53006 * 109.46626 * 180.02562 * 11 10 8 13 13 C 1.52999 * 109.46623 * 179.97438 * 12 11 10 14 14 C 1.50706 * 109.46953 * 179.97438 * 13 12 11 15 15 H 1.07999 * 119.99816 * 0.02562 * 14 13 12 16 16 C 1.37876 * 120.00344 * 180.02562 * 14 13 12 17 17 N 1.31514 * 119.99769 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 120.00300 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.46691 * 0.02562 * 18 16 14 20 20 H 1.48500 * 109.46740 * 119.99592 * 18 16 14 21 21 H 1.48497 * 109.47025 * 239.99950 * 18 16 14 22 22 H 1.09007 * 109.46921 * 180.15304 * 1 2 3 23 23 H 1.08994 * 109.47393 * 300.15278 * 1 2 3 24 24 H 1.08998 * 109.47569 * 60.16034 * 1 2 3 25 25 H 1.09001 * 109.48542 * 302.31951 * 4 2 1 26 26 H 1.08999 * 109.48572 * 182.28221 * 4 2 1 27 27 H 1.09001 * 109.47973 * 178.85529 * 6 5 4 28 28 H 1.09004 * 109.48868 * 58.83423 * 6 5 4 29 29 H 1.08996 * 109.52437 * 297.69735 * 7 6 5 30 30 H 1.09004 * 109.57061 * 177.54865 * 7 6 5 31 31 H 1.00904 * 110.99696 * 151.04602 * 10 8 7 32 32 H 1.08993 * 109.47737 * 60.00169 * 11 10 8 33 33 H 1.09000 * 109.47263 * 299.99731 * 11 10 8 34 34 H 1.09000 * 109.47050 * 299.99824 * 12 11 10 35 35 H 1.09001 * 109.46801 * 59.99937 * 12 11 10 36 36 H 1.09000 * 109.47486 * 299.99829 * 13 12 11 37 37 H 1.09001 * 109.47362 * 60.00551 * 13 12 11 38 38 H 0.97000 * 120.00540 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8951 1.0271 0.0000 4 6 2.0416 -0.7248 1.2476 5 8 1.6099 -2.0867 1.2162 6 6 2.0971 -2.8276 0.0956 7 6 1.5877 -2.1872 -1.1982 8 6 2.0419 -0.7252 -1.2483 9 1 3.1307 -0.6824 -1.2757 10 7 1.4943 -0.0814 -2.4499 11 6 2.3558 -0.3225 -3.6152 12 6 1.7545 0.3624 -4.8442 13 6 2.6520 0.1118 -6.0577 14 6 2.0595 0.7859 -7.2684 15 1 1.1354 1.3381 -7.1809 16 6 2.6970 0.6976 -8.4877 17 7 3.8225 0.0256 -8.5941 18 14 1.9622 1.5325 -9.9886 19 1 0.7023 2.2190 -9.6058 20 1 2.9257 2.5286 -10.5222 21 1 1.6749 0.5141 -11.0304 22 1 -0.3633 -1.0277 0.0027 23 1 -0.3634 0.5162 0.8885 24 1 -0.3634 0.5113 -0.8914 25 1 1.6453 -0.2383 2.1389 26 1 3.1308 -0.6892 1.2677 27 1 1.7409 -3.8559 0.1571 28 1 3.1871 -2.8197 0.1006 29 1 0.4990 -2.2315 -1.2225 30 1 1.9933 -2.7242 -2.0557 31 1 1.3571 0.9069 -2.2999 32 1 2.4303 -1.3947 -3.7964 33 1 3.3489 0.0834 -3.4230 34 1 0.7612 -0.0431 -5.0365 35 1 1.6803 1.4346 -4.6627 36 1 3.6451 0.5177 -5.8651 37 1 2.7265 -0.9603 -6.2393 38 1 4.2713 -0.0362 -9.4518 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000300830126.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:37:01 Heat of formation + Delta-G solvation = -93.080601 kcal Electronic energy + Delta-G solvation = -15968.589133 eV Core-core repulsion = 13422.983649 eV Total energy + Delta-G solvation = -2545.605484 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.79666 -37.71409 -35.83690 -34.31123 -32.85448 -31.63288 -28.18823 -27.62716 -25.22586 -24.24419 -23.33789 -21.96007 -19.90711 -18.50018 -17.44387 -17.06369 -16.56559 -16.46532 -16.19933 -16.00179 -15.29141 -14.64341 -14.55059 -14.08692 -13.79065 -13.50162 -13.46705 -12.87564 -12.81698 -12.55219 -12.48281 -12.33753 -12.22225 -12.11851 -11.58859 -11.48085 -11.31409 -11.20986 -10.99930 -10.57082 -10.45303 -9.38181 -8.21355 -6.32513 1.39611 1.39957 1.53657 2.40352 2.95091 3.11898 3.16227 3.66501 3.86822 4.01011 4.16147 4.20540 4.28530 4.36139 4.44844 4.56119 4.63927 4.69497 4.77152 4.80124 4.89839 4.93815 4.96943 5.08134 5.16596 5.21519 5.23535 5.33005 5.50816 5.54320 5.73301 5.84471 6.07058 6.25913 6.26893 6.48306 6.84572 7.37017 8.90875 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.061137 B = 0.004245 C = 0.004103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 457.880218 B = 6594.615601 C = 6823.381115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.125 4.125 3 H 0.087 0.913 4 C 0.065 3.935 5 O -0.394 6.394 6 C 0.063 3.937 7 C -0.143 4.143 8 C 0.087 3.913 9 H 0.037 0.963 10 N -0.682 5.682 11 C 0.074 3.926 12 C -0.091 4.091 13 C 0.025 3.975 14 C -0.543 4.543 15 H 0.059 0.941 16 C -0.001 4.001 17 N -0.934 5.934 18 Si 0.966 3.034 19 H -0.262 1.262 20 H -0.277 1.277 21 H -0.277 1.277 22 H 0.050 0.950 23 H 0.062 0.938 24 H 0.055 0.945 25 H 0.111 0.889 26 H 0.056 0.944 27 H 0.106 0.894 28 H 0.055 0.945 29 H 0.072 0.928 30 H 0.062 0.938 31 H 0.344 0.656 32 H 0.059 0.941 33 H 0.021 0.979 34 H 0.051 0.949 35 H 0.050 0.950 36 H -0.009 1.009 37 H -0.010 1.010 38 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.844 -1.408 19.446 19.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.144 4.144 3 H 0.106 0.894 4 C -0.012 4.012 5 O -0.313 6.313 6 C -0.014 4.014 7 C -0.182 4.182 8 C -0.023 4.023 9 H 0.055 0.945 10 N -0.313 5.313 11 C -0.055 4.055 12 C -0.129 4.129 13 C -0.013 4.013 14 C -0.581 4.581 15 H 0.077 0.923 16 C -0.199 4.199 17 N -0.575 5.575 18 Si 0.791 3.209 19 H -0.186 1.186 20 H -0.203 1.203 21 H -0.203 1.203 22 H 0.069 0.931 23 H 0.081 0.919 24 H 0.074 0.926 25 H 0.129 0.871 26 H 0.074 0.926 27 H 0.124 0.876 28 H 0.073 0.927 29 H 0.090 0.910 30 H 0.081 0.919 31 H 0.163 0.837 32 H 0.077 0.923 33 H 0.039 0.961 34 H 0.070 0.930 35 H 0.069 0.931 36 H 0.009 0.991 37 H 0.009 0.991 38 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -4.264 -2.052 19.327 19.898 hybrid contribution 0.980 0.904 -1.258 1.833 sum -3.284 -1.148 18.069 18.400 Atomic orbital electron populations 1.21638 0.93668 1.01934 1.01646 1.21943 0.98064 0.99984 0.94379 0.89429 1.22725 0.98751 0.81765 0.97916 1.87891 1.74548 1.23185 1.45700 1.22646 0.98263 0.95994 0.84496 1.22208 1.02406 0.95308 0.98256 1.21599 0.96143 0.94941 0.89585 0.94483 1.60528 1.49558 1.18141 1.03101 1.21853 0.93408 0.99958 0.90320 1.21365 0.98926 0.99149 0.93493 1.18980 0.94327 0.94985 0.93022 1.21728 1.08619 1.32848 0.94873 0.92258 1.25997 0.95303 0.96055 1.02526 1.70103 1.18395 1.43015 1.25972 0.85378 0.78708 0.78288 0.78556 1.18598 1.20255 1.20312 0.93093 0.91949 0.92611 0.87085 0.92595 0.87579 0.92715 0.90951 0.91943 0.83651 0.92279 0.96113 0.92978 0.93079 0.99111 0.99120 0.92751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.58 8.59 71.98 0.62 -1.96 16 2 C -0.12 -2.35 2.63 -10.71 -0.03 -2.38 16 3 H 0.09 1.47 8.14 -2.38 -0.02 1.45 16 4 C 0.07 1.11 6.25 72.01 0.45 1.57 16 5 O -0.39 -8.30 10.18 -148.98 -1.52 -9.82 16 6 C 0.06 1.22 6.84 72.01 0.49 1.72 16 7 C -0.14 -3.33 5.26 30.68 0.16 -3.17 16 8 C 0.09 2.06 2.27 45.03 0.10 2.16 16 9 H 0.04 0.92 7.81 -2.39 -0.02 0.90 16 10 N -0.68 -19.16 5.54 -490.95 -2.72 -21.88 16 11 C 0.07 2.56 5.49 86.31 0.47 3.04 16 12 C -0.09 -3.84 5.41 30.60 0.17 -3.68 16 13 C 0.02 1.32 4.97 29.85 0.15 1.47 16 14 C -0.54 -31.55 9.11 25.60 0.23 -31.31 16 15 H 0.06 3.32 7.74 -2.91 -0.02 3.30 16 16 C 0.00 -0.08 5.46 84.65 0.46 0.39 16 17 N -0.93 -57.59 13.29 21.45 0.28 -57.31 16 18 Si 0.97 44.75 29.54 68.60 2.03 46.78 16 19 H -0.26 -11.59 7.11 99.48 0.71 -10.88 16 20 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 21 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 22 H 0.05 1.12 6.14 -2.38 -0.01 1.11 16 23 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 24 H 0.05 1.19 7.31 -2.39 -0.02 1.17 16 25 H 0.11 1.49 8.14 -2.39 -0.02 1.48 16 26 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 27 H 0.11 1.76 8.14 -2.39 -0.02 1.75 16 28 H 0.05 0.98 8.14 -2.38 -0.02 0.96 16 29 H 0.07 1.82 6.63 -2.39 -0.02 1.80 16 30 H 0.06 1.56 7.55 -2.39 -0.02 1.54 16 31 H 0.34 8.95 8.06 -89.69 -0.72 8.22 16 32 H 0.06 2.14 7.51 -2.39 -0.02 2.12 16 33 H 0.02 0.73 8.06 -2.39 -0.02 0.71 16 34 H 0.05 2.22 8.14 -2.39 -0.02 2.20 16 35 H 0.05 2.06 8.14 -2.39 -0.02 2.05 16 36 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 37 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 38 H 0.26 15.17 8.31 -92.71 -0.77 14.40 16 Total: -1.00 -64.57 298.69 1.64 -62.93 By element: Atomic # 1 Polarization: 11.18 SS G_CDS: 0.29 Total: 11.46 kcal Atomic # 6 Polarization: -35.45 SS G_CDS: 3.28 Total: -32.17 kcal Atomic # 7 Polarization: -76.75 SS G_CDS: -2.44 Total: -79.19 kcal Atomic # 8 Polarization: -8.30 SS G_CDS: -1.52 Total: -9.82 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.78 kcal Total: -64.57 1.64 -62.93 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300830126.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.150 kcal (2) G-P(sol) polarization free energy of solvation -64.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds