Wall clock time and date at job start Mon Mar 30 2020 03:36:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09005 * 109.46791 * 2 1 4 4 C 1.50693 * 109.47121 * 239.99804 * 2 1 3 5 5 H 1.08001 * 120.00195 * 245.37052 * 4 2 1 6 6 C 1.37881 * 120.00142 * 65.37668 * 4 2 1 7 7 N 1.31514 * 120.00352 * 185.16449 * 6 4 2 8 8 Si 1.86801 * 119.99821 * 5.16338 * 6 4 2 9 9 H 1.48495 * 109.47186 * 270.00023 * 8 6 4 10 10 H 1.48505 * 109.47275 * 150.00179 * 8 6 4 11 11 H 1.48502 * 109.47079 * 30.00168 * 8 6 4 12 12 N 1.46900 * 109.47045 * 119.99864 * 2 1 3 13 13 C 1.46908 * 111.00032 * 274.99923 * 12 2 1 14 14 C 1.52999 * 109.47049 * 180.02562 * 13 12 2 15 15 H 1.09001 * 109.54150 * 305.17928 * 14 13 12 16 16 C 1.53184 * 109.54316 * 65.44709 * 14 13 12 17 17 C 1.53083 * 109.16218 * 176.84644 * 16 14 13 18 18 O 1.42904 * 109.41685 * 302.38861 * 17 16 14 19 19 C 1.42903 * 114.09715 * 61.15819 * 18 17 16 20 20 C 1.53094 * 109.41585 * 298.84702 * 19 18 17 21 21 H 1.08996 * 109.52465 * 177.51613 * 20 19 18 22 22 C 1.53002 * 109.51653 * 297.69963 * 20 19 18 23 23 H 1.09001 * 109.46951 * 294.98899 * 1 2 3 24 24 H 1.08996 * 109.47157 * 54.98119 * 1 2 3 25 25 H 1.08994 * 109.47136 * 174.98382 * 1 2 3 26 26 H 0.97001 * 119.99500 * 354.99656 * 7 6 4 27 27 H 1.00903 * 111.00030 * 151.04867 * 12 2 1 28 28 H 1.09008 * 109.46983 * 299.99918 * 13 12 2 29 29 H 1.08999 * 109.47016 * 60.00113 * 13 12 2 30 30 H 1.09002 * 109.51812 * 296.75361 * 16 14 13 31 31 H 1.08999 * 109.52193 * 56.93682 * 16 14 13 32 32 H 1.09004 * 109.48064 * 182.40213 * 17 16 14 33 33 H 1.09004 * 109.48289 * 62.37067 * 17 16 14 34 34 H 1.08999 * 109.48058 * 178.86007 * 19 18 17 35 35 H 1.08996 * 109.49027 * 58.82937 * 19 18 17 36 36 H 1.09002 * 109.46821 * 179.68575 * 22 20 19 37 37 H 1.08992 * 109.47768 * 299.68721 * 22 20 19 38 38 H 1.09006 * 109.47145 * 59.69150 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.5798 -1.6363 -1.1337 6 6 1.7931 -0.1783 -2.4797 7 7 2.1413 -0.8473 -3.5571 8 14 0.9742 1.4928 -2.6419 9 1 -0.4989 1.3179 -2.7074 10 1 1.4492 2.1586 -3.8814 11 1 1.3215 2.3304 -1.4658 12 7 2.0197 -0.6925 1.1995 13 6 2.0825 0.2227 2.3469 14 6 2.5962 -0.5328 3.5742 15 1 1.9736 -1.4102 3.7493 16 6 4.0454 -0.9693 3.3377 17 6 4.5761 -1.6545 4.5996 18 8 4.4710 -0.7576 5.7071 19 6 3.1334 -0.3525 6.0050 20 6 2.5446 0.3850 4.7995 21 1 1.5097 0.6561 5.0082 22 6 3.3606 1.6500 4.5256 23 1 -0.3633 0.4341 0.9315 24 1 -0.3633 0.5897 -0.8416 25 1 -0.3633 -1.0237 -0.0899 26 1 2.6311 -1.6803 -3.4735 27 1 2.9173 -1.1205 1.0288 28 1 2.7589 1.0463 2.1182 29 1 1.0871 0.6164 2.5526 30 1 4.0836 -1.6668 2.5009 31 1 4.6569 -0.0955 3.1130 32 1 5.6205 -1.9293 4.4521 33 1 3.9892 -2.5508 4.8007 34 1 3.1385 0.3108 6.8699 35 1 2.5275 -1.2315 6.2246 36 1 2.9441 2.1715 3.6638 37 1 3.3234 2.3024 5.3979 38 1 4.3957 1.3772 4.3198 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308654655.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:36:39 Heat of formation + Delta-G solvation = -66.576691 kcal Electronic energy + Delta-G solvation = -16593.029479 eV Core-core repulsion = 14048.573291 eV Total energy + Delta-G solvation = -2544.456189 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.83539 -36.50618 -34.50317 -32.44074 -31.59323 -29.35408 -26.92407 -26.13791 -24.54681 -23.10180 -21.87332 -19.64430 -18.74594 -17.54209 -16.30665 -15.94301 -15.41548 -14.99068 -14.84650 -13.89258 -13.62702 -13.29893 -13.17781 -12.80012 -12.37100 -12.08342 -11.87135 -11.81155 -11.50207 -11.30842 -11.11993 -10.88663 -10.54899 -10.49094 -10.23834 -10.08487 -9.94357 -9.71485 -9.36945 -8.67935 -8.46871 -7.47374 -6.44624 -4.10994 3.36264 3.41517 3.57237 3.86336 4.46107 4.66667 4.78191 4.83792 5.03222 5.11371 5.28746 5.31672 5.40982 5.50439 5.58194 5.62188 5.67994 5.74412 5.87623 6.01846 6.05705 6.15631 6.22100 6.25698 6.35638 6.46669 6.57950 6.60804 6.77574 6.85055 7.17889 7.44785 7.71836 8.10041 8.38080 8.49188 8.92402 9.59624 10.94970 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.044094 B = 0.006199 C = 0.005851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 634.852789 B = 4515.926221 C = 4784.689024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.180 3.820 3 H 0.000 1.000 4 C -0.595 4.595 5 H 0.060 0.940 6 C 0.028 3.972 7 N -0.913 5.913 8 Si 1.058 2.942 9 H -0.283 1.283 10 H -0.290 1.290 11 H -0.282 1.282 12 N -0.682 5.682 13 C 0.063 3.937 14 C -0.081 4.081 15 H 0.076 0.924 16 C -0.154 4.154 17 C 0.062 3.938 18 O -0.384 6.384 19 C 0.067 3.933 20 C -0.122 4.122 21 H 0.077 0.923 22 C -0.145 4.145 23 H 0.023 0.977 24 H 0.038 0.962 25 H 0.053 0.947 26 H 0.267 0.733 27 H 0.335 0.665 28 H 0.024 0.976 29 H 0.062 0.938 30 H 0.078 0.922 31 H 0.071 0.929 32 H 0.090 0.910 33 H 0.048 0.952 34 H 0.089 0.911 35 H 0.048 0.952 36 H 0.058 0.942 37 H 0.049 0.951 38 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.784 2.511 17.227 17.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.071 3.929 3 H 0.017 0.983 4 C -0.634 4.634 5 H 0.078 0.922 6 C -0.177 4.177 7 N -0.548 5.548 8 Si 0.888 3.112 9 H -0.210 1.210 10 H -0.217 1.217 11 H -0.208 1.208 12 N -0.314 5.314 13 C -0.066 4.066 14 C -0.100 4.100 15 H 0.095 0.905 16 C -0.191 4.191 17 C -0.014 4.014 18 O -0.303 6.303 19 C -0.010 4.010 20 C -0.141 4.141 21 H 0.096 0.904 22 C -0.202 4.202 23 H 0.042 0.958 24 H 0.057 0.943 25 H 0.072 0.928 26 H 0.077 0.923 27 H 0.154 0.846 28 H 0.042 0.958 29 H 0.081 0.919 30 H 0.097 0.903 31 H 0.089 0.911 32 H 0.108 0.892 33 H 0.067 0.933 34 H 0.107 0.893 35 H 0.066 0.934 36 H 0.077 0.923 37 H 0.068 0.932 38 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 0.739 3.408 16.373 16.740 hybrid contribution 1.003 -0.723 0.629 1.387 sum 1.742 2.686 17.003 17.301 Atomic orbital electron populations 1.22010 0.98705 1.00879 0.97639 1.19575 0.91856 0.92956 0.88469 0.98292 1.22179 1.39715 1.10196 0.91303 0.92192 1.25741 0.96493 1.03509 0.91950 1.70811 1.36858 1.16837 1.30292 0.83802 0.76376 0.75613 0.75377 1.21002 1.21733 1.20783 1.60566 1.32619 1.32835 1.05338 1.22015 0.99448 0.94100 0.91085 1.21216 0.96045 0.98460 0.94312 0.90518 1.22280 0.96761 1.01710 0.98399 1.22574 1.01407 0.91565 0.85891 1.87887 1.27041 1.65338 1.50031 1.22583 0.83672 0.97945 0.96790 1.21767 1.00193 0.96453 0.95732 0.90438 1.21834 1.00775 0.96387 1.01234 0.95775 0.94307 0.92776 0.92295 0.84635 0.95829 0.91934 0.90348 0.91078 0.89180 0.93322 0.89265 0.93401 0.92327 0.93195 0.91949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.05 9.03 37.16 0.34 -2.71 16 2 C 0.18 4.37 2.18 -68.87 -0.15 4.22 16 3 H 0.00 -0.01 6.30 -51.93 -0.33 -0.34 16 4 C -0.60 -16.82 8.92 -34.44 -0.31 -17.13 16 5 H 0.06 1.81 7.90 -52.49 -0.41 1.40 16 6 C 0.03 0.80 5.43 -17.82 -0.10 0.71 16 7 N -0.91 -28.29 13.70 55.43 0.76 -27.53 16 8 Si 1.06 25.93 25.29 -169.99 -4.30 21.63 16 9 H -0.28 -6.62 6.81 56.52 0.38 -6.23 16 10 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 11 H -0.28 -6.49 6.36 56.52 0.36 -6.13 16 12 N -0.68 -14.13 6.30 -107.94 -0.68 -14.81 16 13 C 0.06 1.08 4.35 -3.82 -0.02 1.06 16 14 C -0.08 -1.13 2.26 -90.44 -0.20 -1.33 16 15 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 16 C -0.15 -2.04 4.76 -26.59 -0.13 -2.16 16 17 C 0.06 0.73 6.84 37.20 0.25 0.98 16 18 O -0.38 -4.87 10.18 -35.23 -0.36 -5.23 16 19 C 0.07 0.73 6.25 37.21 0.23 0.96 16 20 C -0.12 -1.43 2.79 -90.48 -0.25 -1.69 16 21 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 22 C -0.15 -1.72 8.36 37.16 0.31 -1.41 16 23 H 0.02 0.47 7.35 -51.93 -0.38 0.09 16 24 H 0.04 0.88 4.40 -51.93 -0.23 0.65 16 25 H 0.05 1.25 8.14 -51.93 -0.42 0.83 16 26 H 0.27 8.23 8.72 -40.82 -0.36 7.87 16 27 H 0.34 6.96 6.61 -39.29 -0.26 6.70 16 28 H 0.02 0.41 6.60 -51.92 -0.34 0.07 16 29 H 0.06 1.07 7.36 -51.93 -0.38 0.68 16 30 H 0.08 1.09 6.85 -51.93 -0.36 0.74 16 31 H 0.07 0.98 6.63 -51.93 -0.34 0.64 16 32 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 36 H 0.06 0.73 6.50 -51.93 -0.34 0.40 16 37 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 38 H 0.06 0.79 6.14 -51.93 -0.32 0.47 16 LS Contribution 283.41 15.07 4.27 4.27 Total: -1.00 -30.10 283.41 -6.61 -36.71 By element: Atomic # 1 Polarization: 9.74 SS G_CDS: -6.29 Total: 3.46 kcal Atomic # 6 Polarization: -18.48 SS G_CDS: -0.02 Total: -18.50 kcal Atomic # 7 Polarization: -42.42 SS G_CDS: 0.08 Total: -42.34 kcal Atomic # 8 Polarization: -4.87 SS G_CDS: -0.36 Total: -5.23 kcal Atomic # 14 Polarization: 25.93 SS G_CDS: -4.30 Total: 21.63 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -30.10 -6.61 -36.71 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308654655.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.864 kcal (2) G-P(sol) polarization free energy of solvation -30.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds