Wall clock time and date at job start Mon Mar 30 2020 03:36:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09005 * 109.46791 * 2 1 4 4 C 1.50693 * 109.47121 * 239.99804 * 2 1 3 5 5 H 1.08001 * 120.00195 * 245.37052 * 4 2 1 6 6 C 1.37881 * 120.00142 * 65.37668 * 4 2 1 7 7 N 1.31514 * 120.00352 * 185.16449 * 6 4 2 8 8 Si 1.86801 * 119.99821 * 5.16338 * 6 4 2 9 9 H 1.48495 * 109.47186 * 270.00023 * 8 6 4 10 10 H 1.48505 * 109.47275 * 150.00179 * 8 6 4 11 11 H 1.48502 * 109.47079 * 30.00168 * 8 6 4 12 12 N 1.46900 * 109.47045 * 119.99864 * 2 1 3 13 13 C 1.46908 * 111.00032 * 274.99923 * 12 2 1 14 14 C 1.52999 * 109.47049 * 180.02562 * 13 12 2 15 15 H 1.09001 * 109.54150 * 305.17928 * 14 13 12 16 16 C 1.53184 * 109.54316 * 65.44709 * 14 13 12 17 17 C 1.53083 * 109.16218 * 176.84644 * 16 14 13 18 18 O 1.42904 * 109.41685 * 302.38861 * 17 16 14 19 19 C 1.42903 * 114.09715 * 61.15819 * 18 17 16 20 20 C 1.53094 * 109.41585 * 298.84702 * 19 18 17 21 21 H 1.08996 * 109.52465 * 177.51613 * 20 19 18 22 22 C 1.53002 * 109.51653 * 297.69963 * 20 19 18 23 23 H 1.09001 * 109.46951 * 294.98899 * 1 2 3 24 24 H 1.08996 * 109.47157 * 54.98119 * 1 2 3 25 25 H 1.08994 * 109.47136 * 174.98382 * 1 2 3 26 26 H 0.97001 * 119.99500 * 354.99656 * 7 6 4 27 27 H 1.00903 * 111.00030 * 151.04867 * 12 2 1 28 28 H 1.09008 * 109.46983 * 299.99918 * 13 12 2 29 29 H 1.08999 * 109.47016 * 60.00113 * 13 12 2 30 30 H 1.09002 * 109.51812 * 296.75361 * 16 14 13 31 31 H 1.08999 * 109.52193 * 56.93682 * 16 14 13 32 32 H 1.09004 * 109.48064 * 182.40213 * 17 16 14 33 33 H 1.09004 * 109.48289 * 62.37067 * 17 16 14 34 34 H 1.08999 * 109.48058 * 178.86007 * 19 18 17 35 35 H 1.08996 * 109.49027 * 58.82937 * 19 18 17 36 36 H 1.09002 * 109.46821 * 179.68575 * 22 20 19 37 37 H 1.08992 * 109.47768 * 299.68721 * 22 20 19 38 38 H 1.09006 * 109.47145 * 59.69150 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.5798 -1.6363 -1.1337 6 6 1.7931 -0.1783 -2.4797 7 7 2.1413 -0.8473 -3.5571 8 14 0.9742 1.4928 -2.6419 9 1 -0.4989 1.3179 -2.7074 10 1 1.4492 2.1586 -3.8814 11 1 1.3215 2.3304 -1.4658 12 7 2.0197 -0.6925 1.1995 13 6 2.0825 0.2227 2.3469 14 6 2.5962 -0.5328 3.5742 15 1 1.9736 -1.4102 3.7493 16 6 4.0454 -0.9693 3.3377 17 6 4.5761 -1.6545 4.5996 18 8 4.4710 -0.7576 5.7071 19 6 3.1334 -0.3525 6.0050 20 6 2.5446 0.3850 4.7995 21 1 1.5097 0.6561 5.0082 22 6 3.3606 1.6500 4.5256 23 1 -0.3633 0.4341 0.9315 24 1 -0.3633 0.5897 -0.8416 25 1 -0.3633 -1.0237 -0.0899 26 1 2.6311 -1.6803 -3.4735 27 1 2.9173 -1.1205 1.0288 28 1 2.7589 1.0463 2.1182 29 1 1.0871 0.6164 2.5526 30 1 4.0836 -1.6668 2.5009 31 1 4.6569 -0.0955 3.1130 32 1 5.6205 -1.9293 4.4521 33 1 3.9892 -2.5508 4.8007 34 1 3.1385 0.3108 6.8699 35 1 2.5275 -1.2315 6.2246 36 1 2.9441 2.1715 3.6638 37 1 3.3234 2.3024 5.3979 38 1 4.3957 1.3772 4.3198 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308654655.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:36:39 Heat of formation + Delta-G solvation = -87.941896 kcal Electronic energy + Delta-G solvation = -16593.955944 eV Core-core repulsion = 14048.573291 eV Total energy + Delta-G solvation = -2545.382653 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.84430 -38.04935 -35.91179 -34.26666 -32.81253 -30.96664 -27.97014 -27.45832 -26.50889 -24.09708 -23.16499 -21.53106 -19.93020 -19.52682 -17.34446 -17.01117 -16.68485 -16.54119 -15.93317 -15.44055 -15.08165 -14.77741 -14.71847 -14.06654 -13.77081 -13.71492 -13.35549 -13.06235 -12.97304 -12.57414 -12.40116 -12.32958 -12.10157 -11.85019 -11.75056 -11.60732 -11.26088 -11.04485 -10.83521 -10.67620 -10.34902 -9.18382 -8.74449 -6.43610 1.40047 1.49519 1.66603 2.43552 2.98595 3.05708 3.41314 3.73065 3.85047 3.92346 4.07700 4.24780 4.37624 4.42971 4.52943 4.61522 4.65760 4.76125 4.77633 4.79138 4.83947 4.87007 4.91317 4.96584 5.01684 5.04936 5.21495 5.27198 5.29684 5.50808 5.57294 5.73880 5.96933 6.25847 6.28919 6.64645 6.75474 7.36549 8.62214 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.044094 B = 0.006199 C = 0.005851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 634.852789 B = 4515.926221 C = 4784.689024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.182 3.818 3 H -0.004 1.004 4 C -0.597 4.597 5 H 0.024 0.976 6 C -0.024 4.024 7 N -0.944 5.944 8 Si 1.094 2.906 9 H -0.261 1.261 10 H -0.291 1.291 11 H -0.257 1.257 12 N -0.685 5.685 13 C 0.066 3.934 14 C -0.076 4.076 15 H 0.074 0.926 16 C -0.152 4.152 17 C 0.065 3.935 18 O -0.397 6.397 19 C 0.065 3.935 20 C -0.118 4.118 21 H 0.091 0.909 22 C -0.143 4.143 23 H 0.055 0.945 24 H 0.039 0.961 25 H 0.041 0.959 26 H 0.252 0.748 27 H 0.331 0.669 28 H 0.019 0.981 29 H 0.068 0.932 30 H 0.064 0.936 31 H 0.062 0.938 32 H 0.101 0.899 33 H 0.057 0.943 34 H 0.109 0.891 35 H 0.058 0.942 36 H 0.048 0.952 37 H 0.067 0.933 38 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.821 3.888 19.418 19.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.072 3.928 3 H 0.014 0.986 4 C -0.635 4.635 5 H 0.042 0.958 6 C -0.222 4.222 7 N -0.581 5.581 8 Si 0.917 3.083 9 H -0.187 1.187 10 H -0.218 1.218 11 H -0.181 1.181 12 N -0.316 5.316 13 C -0.063 4.063 14 C -0.094 4.094 15 H 0.092 0.908 16 C -0.190 4.190 17 C -0.011 4.011 18 O -0.316 6.316 19 C -0.012 4.012 20 C -0.137 4.137 21 H 0.109 0.891 22 C -0.200 4.200 23 H 0.074 0.926 24 H 0.057 0.943 25 H 0.060 0.940 26 H 0.061 0.939 27 H 0.149 0.851 28 H 0.037 0.963 29 H 0.086 0.914 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.119 0.881 33 H 0.075 0.925 34 H 0.127 0.873 35 H 0.076 0.924 36 H 0.067 0.933 37 H 0.086 0.914 38 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -0.223 4.770 18.601 19.204 hybrid contribution 1.364 -1.222 -0.003 1.831 sum 1.141 3.548 18.598 18.968 Atomic orbital electron populations 1.21912 0.97067 1.00510 0.99356 1.19457 0.93085 0.92205 0.88069 0.98628 1.22421 1.38678 1.08954 0.93482 0.95785 1.27180 0.96743 1.06481 0.91756 1.70936 1.38785 1.16963 1.31435 0.83384 0.76823 0.71823 0.76306 1.18688 1.21762 1.18117 1.60553 1.32481 1.33449 1.05161 1.22093 0.99837 0.93663 0.90755 1.21149 0.95929 0.98471 0.93889 0.90807 1.22238 0.96576 1.01215 0.98953 1.22578 1.02210 0.91468 0.84857 1.87879 1.28221 1.65496 1.49985 1.22735 0.82948 0.98656 0.96834 1.21761 1.01115 0.95882 0.94928 0.89088 1.21807 0.99921 0.96676 1.01620 0.92631 0.94251 0.93955 0.93911 0.85114 0.96278 0.91395 0.91695 0.91912 0.88096 0.92508 0.87277 0.92419 0.93323 0.91412 0.93149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.63 9.03 71.98 0.65 -4.98 16 2 C 0.18 8.61 2.18 44.17 0.10 8.71 16 3 H 0.00 -0.18 6.30 -2.38 -0.02 -0.20 16 4 C -0.60 -34.28 8.92 25.60 0.23 -34.06 16 5 H 0.02 1.51 7.90 -2.91 -0.02 1.49 16 6 C -0.02 -1.42 5.43 84.66 0.46 -0.96 16 7 N -0.94 -59.96 13.70 21.45 0.29 -59.66 16 8 Si 1.09 51.06 25.29 68.60 1.73 52.79 16 9 H -0.26 -11.27 6.81 99.48 0.68 -10.59 16 10 H -0.29 -13.53 7.11 99.48 0.71 -12.83 16 11 H -0.26 -10.86 6.36 99.48 0.63 -10.23 16 12 N -0.69 -27.98 6.30 -495.43 -3.12 -31.10 16 13 C 0.07 2.12 4.35 86.30 0.38 2.50 16 14 C -0.08 -1.96 2.26 -10.67 -0.02 -1.98 16 15 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 16 C -0.15 -3.90 4.76 30.68 0.15 -3.75 16 17 C 0.07 1.43 6.84 72.01 0.49 1.92 16 18 O -0.40 -9.13 10.18 -148.98 -1.52 -10.65 16 19 C 0.06 1.21 6.25 72.01 0.45 1.66 16 20 C -0.12 -2.44 2.79 -10.70 -0.03 -2.47 16 21 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 22 C -0.14 -3.06 8.36 71.98 0.60 -2.46 16 23 H 0.05 2.03 7.35 -2.39 -0.02 2.01 16 24 H 0.04 1.68 4.40 -2.39 -0.01 1.66 16 25 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 26 H 0.25 16.21 8.72 -92.71 -0.81 15.40 16 27 H 0.33 13.93 6.61 -89.69 -0.59 13.34 16 28 H 0.02 0.64 6.60 -2.38 -0.02 0.63 16 29 H 0.07 2.13 7.36 -2.39 -0.02 2.11 16 30 H 0.06 1.82 6.85 -2.39 -0.02 1.80 16 31 H 0.06 1.70 6.63 -2.39 -0.02 1.69 16 32 H 0.10 1.95 8.14 -2.38 -0.02 1.93 16 33 H 0.06 1.15 8.14 -2.38 -0.02 1.13 16 34 H 0.11 1.62 8.14 -2.39 -0.02 1.60 16 35 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 36 H 0.05 1.12 6.50 -2.39 -0.02 1.11 16 37 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 38 H 0.05 1.19 6.14 -2.38 -0.01 1.18 16 Total: -1.00 -64.76 283.41 1.13 -63.62 By element: Atomic # 1 Polarization: 20.57 SS G_CDS: 0.30 Total: 20.87 kcal Atomic # 6 Polarization: -39.33 SS G_CDS: 3.45 Total: -35.88 kcal Atomic # 7 Polarization: -87.93 SS G_CDS: -2.83 Total: -90.76 kcal Atomic # 8 Polarization: -9.13 SS G_CDS: -1.52 Total: -10.65 kcal Atomic # 14 Polarization: 51.06 SS G_CDS: 1.73 Total: 52.79 kcal Total: -64.76 1.13 -63.62 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308654655.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.318 kcal (2) G-P(sol) polarization free energy of solvation -64.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds