Wall clock time and date at job start Mon Mar 30 2020 04:12:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09005 * 109.47116 * 2 1 4 4 C 1.52995 * 109.47328 * 239.99739 * 2 1 3 5 5 C 1.53002 * 109.47218 * 174.99902 * 4 2 1 6 6 H 1.08999 * 109.87060 * 53.99399 * 5 4 2 7 7 C 1.54099 * 109.88012 * 175.00201 * 5 4 2 8 8 C 1.54810 * 104.19149 * 121.45586 * 7 5 4 9 9 C 1.54997 * 102.08807 * 20.88164 * 8 7 5 10 10 O 1.43745 * 109.88118 * 292.83557 * 5 4 2 11 11 N 1.46901 * 109.46970 * 119.99819 * 2 1 3 12 12 C 1.46902 * 110.99931 * 275.00078 * 11 2 1 13 13 C 1.53001 * 109.47217 * 179.97438 * 12 11 2 14 14 C 1.50694 * 109.47168 * 180.02562 * 13 12 11 15 15 H 1.08000 * 120.00563 * 0.02562 * 14 13 12 16 16 C 1.37885 * 119.99902 * 180.02562 * 14 13 12 17 17 N 1.31516 * 119.99913 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 119.99766 * 179.97438 * 16 14 13 19 19 H 1.48506 * 109.46985 * 179.97438 * 18 16 14 20 20 H 1.48494 * 109.47276 * 299.99832 * 18 16 14 21 21 H 1.48498 * 109.47150 * 60.00043 * 18 16 14 22 22 H 1.09001 * 109.46953 * 60.00152 * 1 2 3 23 23 H 1.09005 * 109.47116 * 180.02562 * 1 2 3 24 24 H 1.08995 * 109.47865 * 300.00281 * 1 2 3 25 25 H 1.08997 * 109.47168 * 295.00150 * 4 2 1 26 26 H 1.09001 * 109.47080 * 55.00145 * 4 2 1 27 27 H 1.09004 * 110.48844 * 240.13368 * 7 5 4 28 28 H 1.09001 * 110.48625 * 2.64119 * 7 5 4 29 29 H 1.09000 * 110.90819 * 139.07774 * 8 7 5 30 30 H 1.09000 * 110.90486 * 262.68768 * 8 7 5 31 31 H 1.08993 * 110.62021 * 81.47731 * 9 8 7 32 32 H 1.08998 * 110.61555 * 204.32261 * 9 8 7 33 33 H 1.00900 * 111.00210 * 151.05186 * 11 2 1 34 34 H 1.09002 * 109.46978 * 60.00184 * 12 11 2 35 35 H 1.08998 * 109.47251 * 299.99702 * 12 11 2 36 36 H 1.09007 * 109.46922 * 59.99765 * 13 12 11 37 37 H 1.09003 * 109.46836 * 300.00520 * 13 12 11 38 38 H 0.97001 * 119.99646 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5648 -0.6133 -1.3136 6 1 4.0015 -0.9741 -0.3823 7 6 4.0992 -1.4413 -2.4983 8 6 4.8579 -0.4110 -3.3698 9 6 5.1396 0.7269 -2.3558 10 8 3.9490 0.7533 -1.5396 11 7 2.0196 -0.6925 1.1995 12 6 2.0823 0.2227 2.3469 13 6 2.5948 -0.5330 3.5746 14 6 2.6586 0.4056 4.7518 15 1 2.3628 1.4378 4.6361 16 6 3.0947 -0.0534 5.9767 17 7 3.4545 -1.3105 6.1177 18 14 3.1744 1.1103 7.4357 19 1 3.6718 0.3767 8.6273 20 1 4.0960 2.2322 7.1242 21 1 1.8183 1.6467 7.7157 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3635 0.5138 0.8899 25 1 1.7516 -1.7715 -1.2055 26 1 1.6054 -0.2618 -2.1369 27 1 4.7790 -2.2170 -2.1458 28 1 3.2746 -1.8834 -3.0575 29 1 5.7885 -0.8330 -3.7494 30 1 4.2307 -0.0567 -4.1878 31 1 6.0151 0.4933 -1.7501 32 1 5.2745 1.6770 -2.8729 33 1 2.9172 -1.1204 1.0289 34 1 1.0869 0.6164 2.5525 35 1 2.7587 1.0462 2.1183 36 1 3.5902 -0.9272 3.3692 37 1 1.9181 -1.3564 3.8030 38 1 3.7616 -1.6333 6.9793 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308663121.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:12:31 Heat of formation + Delta-G solvation = -69.841870 kcal Electronic energy + Delta-G solvation = -16019.628006 eV Core-core repulsion = 13475.030228 eV Total energy + Delta-G solvation = -2544.597777 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.64005 -36.80240 -33.49723 -32.25833 -31.66756 -29.85256 -27.96909 -25.80187 -23.88118 -22.35434 -21.03782 -20.45233 -19.93038 -16.53998 -16.30554 -15.88518 -15.57392 -15.22853 -14.44231 -14.04423 -13.73174 -13.48587 -12.86146 -12.36178 -12.24451 -12.11247 -11.95551 -11.79729 -11.50446 -11.29802 -11.10106 -10.91626 -10.84819 -10.78168 -10.47528 -10.25505 -9.83257 -9.65126 -9.25385 -9.08861 -8.29742 -7.68490 -5.94634 -3.96678 3.37198 3.40926 3.43911 3.82361 4.44803 4.48520 4.58729 4.76044 4.87241 4.94007 5.12558 5.26666 5.39980 5.41238 5.49578 5.55668 5.61344 5.69892 5.78905 5.85399 5.96491 5.98968 6.11500 6.22989 6.38045 6.46324 6.52473 6.66832 6.90662 7.09568 7.60201 7.81083 7.91168 8.07054 8.16488 8.50810 9.10469 9.66621 11.16888 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.032952 B = 0.005182 C = 0.004846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.516096 B = 5401.714409 C = 5776.109777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.081 3.919 3 H 0.046 0.954 4 C -0.116 4.116 5 C 0.070 3.930 6 H 0.072 0.928 7 C -0.151 4.151 8 C -0.155 4.155 9 C 0.044 3.956 10 O -0.370 6.370 11 N -0.687 5.687 12 C 0.066 3.934 13 C 0.026 3.974 14 C -0.520 4.520 15 H 0.053 0.947 16 C 0.058 3.942 17 N -0.895 5.895 18 Si 0.893 3.107 19 H -0.287 1.287 20 H -0.277 1.277 21 H -0.277 1.277 22 H 0.047 0.953 23 H 0.057 0.943 24 H 0.055 0.945 25 H 0.081 0.919 26 H 0.071 0.929 27 H 0.075 0.925 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.074 0.926 31 H 0.060 0.940 32 H 0.089 0.911 33 H 0.332 0.668 34 H 0.057 0.943 35 H 0.015 0.985 36 H 0.012 0.988 37 H 0.024 0.976 38 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.974 0.665 -18.933 18.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.029 4.029 3 H 0.064 0.936 4 C -0.154 4.154 5 C 0.012 3.988 6 H 0.089 0.911 7 C -0.189 4.189 8 C -0.192 4.192 9 C -0.032 4.032 10 O -0.289 6.289 11 N -0.320 5.320 12 C -0.062 4.062 13 C -0.012 4.012 14 C -0.559 4.559 15 H 0.072 0.928 16 C -0.143 4.143 17 N -0.534 5.534 18 Si 0.720 3.280 19 H -0.213 1.213 20 H -0.203 1.203 21 H -0.202 1.202 22 H 0.066 0.934 23 H 0.076 0.924 24 H 0.074 0.926 25 H 0.100 0.900 26 H 0.089 0.911 27 H 0.094 0.906 28 H 0.097 0.903 29 H 0.096 0.904 30 H 0.093 0.907 31 H 0.078 0.922 32 H 0.108 0.892 33 H 0.151 0.849 34 H 0.075 0.925 35 H 0.033 0.967 36 H 0.030 0.970 37 H 0.043 0.957 38 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 0.304 0.475 -18.546 18.554 hybrid contribution 1.038 0.931 0.582 1.511 sum 1.342 1.405 -17.964 18.068 Atomic orbital electron populations 1.21763 0.95124 1.01850 1.00754 1.21456 0.95477 0.96469 0.89510 0.93637 1.21959 0.93013 1.01798 0.98648 1.22883 0.96007 0.82205 0.97660 0.91064 1.23003 1.00626 0.98576 0.96691 1.23120 1.00850 0.96541 0.98737 1.23524 0.88913 0.99189 0.91617 1.88930 1.43244 1.25162 1.71603 1.60743 1.32851 1.34226 1.04198 1.22172 0.99496 0.93596 0.90922 1.19060 0.96095 0.95772 0.90232 1.21164 1.43781 0.96354 0.94604 0.92840 1.24998 0.95460 0.95084 0.98799 1.69968 1.44590 1.14362 1.24486 0.86654 0.78411 0.80913 0.81984 1.21292 1.20310 1.20232 0.93418 0.92356 0.92603 0.90018 0.91082 0.90582 0.90338 0.90438 0.90696 0.92223 0.89248 0.84905 0.92454 0.96655 0.96996 0.95733 0.93007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.00 9.41 37.15 0.35 -1.65 16 2 C 0.08 1.28 2.61 -67.72 -0.18 1.11 16 3 H 0.05 0.80 7.44 -51.93 -0.39 0.42 16 4 C -0.12 -1.49 4.29 -26.73 -0.11 -1.60 16 5 C 0.07 0.90 3.31 -26.16 -0.09 0.81 16 6 H 0.07 1.01 6.30 -51.93 -0.33 0.68 16 7 C -0.15 -1.47 6.64 -25.20 -0.17 -1.64 16 8 C -0.15 -1.34 7.15 -24.72 -0.18 -1.52 16 9 C 0.04 0.47 7.72 38.21 0.29 0.77 16 10 O -0.37 -5.31 10.76 -35.23 -0.38 -5.69 16 11 N -0.69 -13.00 6.31 -106.73 -0.67 -13.67 16 12 C 0.07 1.49 5.42 -3.82 -0.02 1.47 16 13 C 0.03 0.70 5.23 -27.89 -0.15 0.56 16 14 C -0.52 -15.26 9.11 -34.44 -0.31 -15.57 16 15 H 0.05 1.52 7.74 -52.49 -0.41 1.12 16 16 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 17 N -0.89 -27.51 13.29 55.43 0.74 -26.78 16 18 Si 0.89 22.16 29.54 -169.99 -5.02 17.14 16 19 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 20 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 21 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 22 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 23 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 24 H 0.05 0.88 7.45 -51.93 -0.39 0.49 16 25 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 26 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 27 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.08 0.68 7.70 -51.93 -0.40 0.28 16 29 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.33 6.09 6.42 -39.29 -0.25 5.84 16 34 H 0.06 1.29 7.44 -51.93 -0.39 0.91 16 35 H 0.02 0.35 8.06 -51.93 -0.42 -0.07 16 36 H 0.01 0.33 8.14 -51.92 -0.42 -0.09 16 37 H 0.02 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 303.99 15.07 4.58 4.58 Total: -1.00 -31.47 303.99 -8.16 -39.63 By element: Atomic # 1 Polarization: 7.20 SS G_CDS: -6.75 Total: 0.45 kcal Atomic # 6 Polarization: -15.01 SS G_CDS: -0.66 Total: -15.67 kcal Atomic # 7 Polarization: -40.51 SS G_CDS: 0.06 Total: -40.45 kcal Atomic # 8 Polarization: -5.31 SS G_CDS: -0.38 Total: -5.69 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -31.47 -8.16 -39.63 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308663121.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.209 kcal (2) G-P(sol) polarization free energy of solvation -31.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds