Wall clock time and date at job start Mon Mar 30 2020 04:12:31
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52993 * 1
3 3 H 1.09005 * 109.47116 * 2 1
4 4 C 1.52995 * 109.47328 * 239.99739 * 2 1 3
5 5 C 1.53002 * 109.47218 * 174.99902 * 4 2 1
6 6 H 1.08999 * 109.87060 * 53.99399 * 5 4 2
7 7 C 1.54099 * 109.88012 * 175.00201 * 5 4 2
8 8 C 1.54810 * 104.19149 * 121.45586 * 7 5 4
9 9 C 1.54997 * 102.08807 * 20.88164 * 8 7 5
10 10 O 1.43745 * 109.88118 * 292.83557 * 5 4 2
11 11 N 1.46901 * 109.46970 * 119.99819 * 2 1 3
12 12 C 1.46902 * 110.99931 * 275.00078 * 11 2 1
13 13 C 1.53001 * 109.47217 * 179.97438 * 12 11 2
14 14 C 1.50694 * 109.47168 * 180.02562 * 13 12 11
15 15 H 1.08000 * 120.00563 * 0.02562 * 14 13 12
16 16 C 1.37885 * 119.99902 * 180.02562 * 14 13 12
17 17 N 1.31516 * 119.99913 * 359.97438 * 16 14 13
18 18 Si 1.86798 * 119.99766 * 179.97438 * 16 14 13
19 19 H 1.48506 * 109.46985 * 179.97438 * 18 16 14
20 20 H 1.48494 * 109.47276 * 299.99832 * 18 16 14
21 21 H 1.48498 * 109.47150 * 60.00043 * 18 16 14
22 22 H 1.09001 * 109.46953 * 60.00152 * 1 2 3
23 23 H 1.09005 * 109.47116 * 180.02562 * 1 2 3
24 24 H 1.08995 * 109.47865 * 300.00281 * 1 2 3
25 25 H 1.08997 * 109.47168 * 295.00150 * 4 2 1
26 26 H 1.09001 * 109.47080 * 55.00145 * 4 2 1
27 27 H 1.09004 * 110.48844 * 240.13368 * 7 5 4
28 28 H 1.09001 * 110.48625 * 2.64119 * 7 5 4
29 29 H 1.09000 * 110.90819 * 139.07774 * 8 7 5
30 30 H 1.09000 * 110.90486 * 262.68768 * 8 7 5
31 31 H 1.08993 * 110.62021 * 81.47731 * 9 8 7
32 32 H 1.08998 * 110.61555 * 204.32261 * 9 8 7
33 33 H 1.00900 * 111.00210 * 151.05186 * 11 2 1
34 34 H 1.09002 * 109.46978 * 60.00184 * 12 11 2
35 35 H 1.08998 * 109.47251 * 299.99702 * 12 11 2
36 36 H 1.09007 * 109.46922 * 59.99765 * 13 12 11
37 37 H 1.09003 * 109.46836 * 300.00520 * 13 12 11
38 38 H 0.97001 * 119.99646 * 179.97438 * 17 16 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 6 2.0400 -0.7213 -1.2492
5 6 3.5648 -0.6133 -1.3136
6 1 4.0015 -0.9741 -0.3823
7 6 4.0992 -1.4413 -2.4983
8 6 4.8579 -0.4110 -3.3698
9 6 5.1396 0.7269 -2.3558
10 8 3.9490 0.7533 -1.5396
11 7 2.0196 -0.6925 1.1995
12 6 2.0823 0.2227 2.3469
13 6 2.5948 -0.5330 3.5746
14 6 2.6586 0.4056 4.7518
15 1 2.3628 1.4378 4.6361
16 6 3.0947 -0.0534 5.9767
17 7 3.4545 -1.3105 6.1177
18 14 3.1744 1.1103 7.4357
19 1 3.6718 0.3767 8.6273
20 1 4.0960 2.2322 7.1242
21 1 1.8183 1.6467 7.7157
22 1 -0.3633 0.5138 -0.8900
23 1 -0.3633 -1.0277 0.0005
24 1 -0.3635 0.5138 0.8899
25 1 1.7516 -1.7715 -1.2055
26 1 1.6054 -0.2618 -2.1369
27 1 4.7790 -2.2170 -2.1458
28 1 3.2746 -1.8834 -3.0575
29 1 5.7885 -0.8330 -3.7494
30 1 4.2307 -0.0567 -4.1878
31 1 6.0151 0.4933 -1.7501
32 1 5.2745 1.6770 -2.8729
33 1 2.9172 -1.1204 1.0289
34 1 1.0869 0.6164 2.5525
35 1 2.7587 1.0462 2.1183
36 1 3.5902 -0.9272 3.3692
37 1 1.9181 -1.3564 3.8030
38 1 3.7616 -1.6333 6.9793
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000308663121.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 04:12:31
Heat of formation + Delta-G solvation = -90.869107 kcal
Electronic energy + Delta-G solvation = -16020.539815 eV
Core-core repulsion = 13475.030228 eV
Total energy + Delta-G solvation = -2545.509587 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 227.163 amu
Computer time = 0.39 seconds
Orbital eigenvalues (eV)
-40.59500 -38.22350 -35.50535 -33.57653 -32.96452 -31.04356 -29.75731 -26.87344
-25.84662 -23.24859 -22.45845 -21.91166 -21.18643 -18.51017 -17.53520 -16.87717
-16.77847 -16.58271 -16.39221 -15.49328 -14.96258 -14.52805 -14.48716 -14.14836
-13.63622 -13.25023 -13.03676 -12.98175 -12.84383 -12.80857 -12.58983 -12.41966
-12.35425 -12.01143 -11.73892 -11.64475 -11.40180 -11.32700 -11.12744 -10.63243
-10.56979 -9.28505 -8.21217 -6.33077 1.39127 1.42944 1.50938 2.40015
2.95237 3.11719 3.36549 3.66677 3.67789 3.96498 4.07708 4.14555
4.26118 4.41906 4.51467 4.52561 4.66009 4.67564 4.78761 4.81137
4.90422 4.94097 4.96342 5.03729 5.08126 5.12558 5.17921 5.26115
5.42479 5.43710 5.65992 5.77934 5.99805 6.14656 6.29757 6.55863
6.83097 7.35968 8.90874
Molecular weight = 227.16amu
Principal moments of inertia in cm(-1)
A = 0.032952 B = 0.005182 C = 0.004846
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 849.516096 B = 5401.714409 C = 5776.109777
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.133 4.133
2 C 0.079 3.921
3 H 0.027 0.973
4 C -0.107 4.107
5 C 0.064 3.936
6 H 0.048 0.952
7 C -0.147 4.147
8 C -0.146 4.146
9 C 0.033 3.967
10 O -0.401 6.401
11 N -0.688 5.688
12 C 0.086 3.914
13 C 0.034 3.966
14 C -0.548 4.548
15 H 0.057 0.943
16 C 0.002 3.998
17 N -0.931 5.931
18 Si 0.968 3.032
19 H -0.280 1.280
20 H -0.267 1.267
21 H -0.266 1.266
22 H 0.074 0.926
23 H 0.062 0.938
24 H 0.037 0.963
25 H 0.092 0.908
26 H 0.089 0.911
27 H 0.081 0.919
28 H 0.093 0.907
29 H 0.097 0.903
30 H 0.084 0.916
31 H 0.056 0.944
32 H 0.103 0.897
33 H 0.334 0.666
34 H 0.056 0.944
35 H 0.008 0.992
36 H -0.011 1.011
37 H -0.004 1.004
38 H 0.265 0.735
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.817 1.192 -20.085 20.136
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.191 4.191
2 C -0.030 4.030
3 H 0.045 0.955
4 C -0.145 4.145
5 C 0.006 3.994
6 H 0.066 0.934
7 C -0.185 4.185
8 C -0.183 4.183
9 C -0.043 4.043
10 O -0.321 6.321
11 N -0.321 5.321
12 C -0.043 4.043
13 C -0.003 4.003
14 C -0.587 4.587
15 H 0.076 0.924
16 C -0.196 4.196
17 N -0.571 5.571
18 Si 0.792 3.208
19 H -0.205 1.205
20 H -0.192 1.192
21 H -0.191 1.191
22 H 0.093 0.907
23 H 0.081 0.919
24 H 0.056 0.944
25 H 0.111 0.889
26 H 0.107 0.893
27 H 0.100 0.900
28 H 0.112 0.888
29 H 0.115 0.885
30 H 0.103 0.897
31 H 0.075 0.925
32 H 0.121 0.879
33 H 0.153 0.847
34 H 0.074 0.926
35 H 0.026 0.974
36 H 0.007 0.993
37 H 0.015 0.985
38 H 0.073 0.927
Dipole moment (debyes) X Y Z Total
from point charges 0.144 1.003 -19.723 19.749
hybrid contribution 1.106 0.751 0.908 1.616
sum 1.250 1.753 -18.815 18.938
Atomic orbital electron populations
1.21748 0.93871 1.02264 1.01244 1.21566 0.96389 0.95586 0.89505
0.95490 1.21907 0.93103 1.02083 0.97373 1.22917 0.95946 0.82383
0.98155 0.93407 1.22995 1.01350 0.98492 0.95645 1.23106 1.01815
0.95260 0.98122 1.23761 0.87709 1.00920 0.91919 1.88895 1.44648
1.26065 1.72503 1.60704 1.33075 1.33669 1.04671 1.21771 0.98724
0.93162 0.90625 1.18899 0.94227 0.95072 0.92107 1.21573 1.44388
0.96898 0.95802 0.92444 1.25977 0.94595 0.96912 1.02079 1.70102
1.45028 1.16386 1.25544 0.85463 0.78977 0.78595 0.77772 1.20476
1.19242 1.19117 0.90697 0.91930 0.94374 0.88915 0.89295 0.89996
0.88797 0.88462 0.89731 0.92549 0.87934 0.84690 0.92584 0.97369
0.99283 0.98527 0.92650
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -3.72 9.41 71.98 0.68 -3.05 16
2 C 0.08 2.47 2.61 44.91 0.12 2.59 16
3 H 0.03 0.96 7.44 -2.38 -0.02 0.94 16
4 C -0.11 -2.58 4.29 30.59 0.13 -2.45 16
5 C 0.06 1.59 3.31 30.97 0.10 1.69 16
6 H 0.05 1.39 6.30 -2.39 -0.02 1.37 16
7 C -0.15 -2.55 6.64 31.58 0.21 -2.34 16
8 C -0.15 -2.16 7.15 31.90 0.23 -1.94 16
9 C 0.03 0.66 7.72 72.67 0.56 1.23 16
10 O -0.40 -11.34 10.76 -148.98 -1.60 -12.94 16
11 N -0.69 -26.49 6.31 -491.57 -3.10 -29.59 16
12 C 0.09 3.99 5.42 86.30 0.47 4.46 16
13 C 0.03 1.94 5.23 29.85 0.16 2.10 16
14 C -0.55 -32.76 9.11 25.60 0.23 -32.52 16
15 H 0.06 3.30 7.74 -2.91 -0.02 3.28 16
16 C 0.00 0.15 5.46 84.66 0.46 0.61 16
17 N -0.93 -58.14 13.29 21.45 0.28 -57.85 16
18 Si 0.97 45.44 29.54 68.60 2.03 47.46 16
19 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16
20 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16
21 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16
22 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16
23 H 0.06 1.69 8.14 -2.38 -0.02 1.67 16
24 H 0.04 1.18 7.45 -2.39 -0.02 1.16 16
25 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16
26 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16
27 H 0.08 1.32 8.14 -2.38 -0.02 1.30 16
28 H 0.09 1.35 7.70 -2.39 -0.02 1.33 16
29 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16
30 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16
31 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16
32 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16
33 H 0.33 12.62 6.42 -89.69 -0.58 12.05 16
34 H 0.06 2.59 7.44 -2.39 -0.02 2.57 16
35 H 0.01 0.38 8.06 -2.39 -0.02 0.36 16
36 H -0.01 -0.67 8.14 -2.38 -0.02 -0.69 16
37 H 0.00 -0.23 8.14 -2.39 -0.02 -0.25 16
38 H 0.26 15.46 8.31 -92.71 -0.77 14.69 16
Total: -1.00 -68.31 303.99 1.39 -66.92
By element:
Atomic # 1 Polarization: 15.19 SS G_CDS: 0.43 Total: 15.63 kcal
Atomic # 6 Polarization: -32.97 SS G_CDS: 3.35 Total: -29.62 kcal
Atomic # 7 Polarization: -84.63 SS G_CDS: -2.82 Total: -87.45 kcal
Atomic # 8 Polarization: -11.34 SS G_CDS: -1.60 Total: -12.94 kcal
Atomic # 14 Polarization: 45.44 SS G_CDS: 2.03 Total: 47.46 kcal
Total: -68.31 1.39 -66.92 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000308663121.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -23.947 kcal
(2) G-P(sol) polarization free energy of solvation -68.309 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.255 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.386 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.922 kcal
(6) G-S(sol) free energy of system = (1) + (5) -90.869 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.40 seconds