Wall clock time and date at job start Mon Mar 30 2020 04:12:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09005 * 109.47116 * 2 1 4 4 C 1.52995 * 109.47328 * 239.99739 * 2 1 3 5 5 C 1.53002 * 109.47218 * 174.99902 * 4 2 1 6 6 H 1.08999 * 109.87060 * 53.99399 * 5 4 2 7 7 C 1.54099 * 109.88012 * 175.00201 * 5 4 2 8 8 C 1.54810 * 104.19149 * 121.45586 * 7 5 4 9 9 C 1.54997 * 102.08807 * 20.88164 * 8 7 5 10 10 O 1.43745 * 109.88118 * 292.83557 * 5 4 2 11 11 N 1.46901 * 109.46970 * 119.99819 * 2 1 3 12 12 C 1.46902 * 110.99931 * 275.00078 * 11 2 1 13 13 C 1.53001 * 109.47217 * 179.97438 * 12 11 2 14 14 C 1.50694 * 109.47168 * 180.02562 * 13 12 11 15 15 H 1.08000 * 120.00563 * 0.02562 * 14 13 12 16 16 C 1.37885 * 119.99902 * 180.02562 * 14 13 12 17 17 N 1.31516 * 119.99913 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 119.99766 * 179.97438 * 16 14 13 19 19 H 1.48506 * 109.46985 * 179.97438 * 18 16 14 20 20 H 1.48494 * 109.47276 * 299.99832 * 18 16 14 21 21 H 1.48498 * 109.47150 * 60.00043 * 18 16 14 22 22 H 1.09001 * 109.46953 * 60.00152 * 1 2 3 23 23 H 1.09005 * 109.47116 * 180.02562 * 1 2 3 24 24 H 1.08995 * 109.47865 * 300.00281 * 1 2 3 25 25 H 1.08997 * 109.47168 * 295.00150 * 4 2 1 26 26 H 1.09001 * 109.47080 * 55.00145 * 4 2 1 27 27 H 1.09004 * 110.48844 * 240.13368 * 7 5 4 28 28 H 1.09001 * 110.48625 * 2.64119 * 7 5 4 29 29 H 1.09000 * 110.90819 * 139.07774 * 8 7 5 30 30 H 1.09000 * 110.90486 * 262.68768 * 8 7 5 31 31 H 1.08993 * 110.62021 * 81.47731 * 9 8 7 32 32 H 1.08998 * 110.61555 * 204.32261 * 9 8 7 33 33 H 1.00900 * 111.00210 * 151.05186 * 11 2 1 34 34 H 1.09002 * 109.46978 * 60.00184 * 12 11 2 35 35 H 1.08998 * 109.47251 * 299.99702 * 12 11 2 36 36 H 1.09007 * 109.46922 * 59.99765 * 13 12 11 37 37 H 1.09003 * 109.46836 * 300.00520 * 13 12 11 38 38 H 0.97001 * 119.99646 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5648 -0.6133 -1.3136 6 1 4.0015 -0.9741 -0.3823 7 6 4.0992 -1.4413 -2.4983 8 6 4.8579 -0.4110 -3.3698 9 6 5.1396 0.7269 -2.3558 10 8 3.9490 0.7533 -1.5396 11 7 2.0196 -0.6925 1.1995 12 6 2.0823 0.2227 2.3469 13 6 2.5948 -0.5330 3.5746 14 6 2.6586 0.4056 4.7518 15 1 2.3628 1.4378 4.6361 16 6 3.0947 -0.0534 5.9767 17 7 3.4545 -1.3105 6.1177 18 14 3.1744 1.1103 7.4357 19 1 3.6718 0.3767 8.6273 20 1 4.0960 2.2322 7.1242 21 1 1.8183 1.6467 7.7157 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3635 0.5138 0.8899 25 1 1.7516 -1.7715 -1.2055 26 1 1.6054 -0.2618 -2.1369 27 1 4.7790 -2.2170 -2.1458 28 1 3.2746 -1.8834 -3.0575 29 1 5.7885 -0.8330 -3.7494 30 1 4.2307 -0.0567 -4.1878 31 1 6.0151 0.4933 -1.7501 32 1 5.2745 1.6770 -2.8729 33 1 2.9172 -1.1204 1.0289 34 1 1.0869 0.6164 2.5525 35 1 2.7587 1.0462 2.1183 36 1 3.5902 -0.9272 3.3692 37 1 1.9181 -1.3564 3.8030 38 1 3.7616 -1.6333 6.9793 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308663121.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:12:31 Heat of formation + Delta-G solvation = -90.869107 kcal Electronic energy + Delta-G solvation = -16020.539815 eV Core-core repulsion = 13475.030228 eV Total energy + Delta-G solvation = -2545.509587 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.59500 -38.22350 -35.50535 -33.57653 -32.96452 -31.04356 -29.75731 -26.87344 -25.84662 -23.24859 -22.45845 -21.91166 -21.18643 -18.51017 -17.53520 -16.87717 -16.77847 -16.58271 -16.39221 -15.49328 -14.96258 -14.52805 -14.48716 -14.14836 -13.63622 -13.25023 -13.03676 -12.98175 -12.84383 -12.80857 -12.58983 -12.41966 -12.35425 -12.01143 -11.73892 -11.64475 -11.40180 -11.32700 -11.12744 -10.63243 -10.56979 -9.28505 -8.21217 -6.33077 1.39127 1.42944 1.50938 2.40015 2.95237 3.11719 3.36549 3.66677 3.67789 3.96498 4.07708 4.14555 4.26118 4.41906 4.51467 4.52561 4.66009 4.67564 4.78761 4.81137 4.90422 4.94097 4.96342 5.03729 5.08126 5.12558 5.17921 5.26115 5.42479 5.43710 5.65992 5.77934 5.99805 6.14656 6.29757 6.55863 6.83097 7.35968 8.90874 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.032952 B = 0.005182 C = 0.004846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.516096 B = 5401.714409 C = 5776.109777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.079 3.921 3 H 0.027 0.973 4 C -0.107 4.107 5 C 0.064 3.936 6 H 0.048 0.952 7 C -0.147 4.147 8 C -0.146 4.146 9 C 0.033 3.967 10 O -0.401 6.401 11 N -0.688 5.688 12 C 0.086 3.914 13 C 0.034 3.966 14 C -0.548 4.548 15 H 0.057 0.943 16 C 0.002 3.998 17 N -0.931 5.931 18 Si 0.968 3.032 19 H -0.280 1.280 20 H -0.267 1.267 21 H -0.266 1.266 22 H 0.074 0.926 23 H 0.062 0.938 24 H 0.037 0.963 25 H 0.092 0.908 26 H 0.089 0.911 27 H 0.081 0.919 28 H 0.093 0.907 29 H 0.097 0.903 30 H 0.084 0.916 31 H 0.056 0.944 32 H 0.103 0.897 33 H 0.334 0.666 34 H 0.056 0.944 35 H 0.008 0.992 36 H -0.011 1.011 37 H -0.004 1.004 38 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.817 1.192 -20.085 20.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.030 4.030 3 H 0.045 0.955 4 C -0.145 4.145 5 C 0.006 3.994 6 H 0.066 0.934 7 C -0.185 4.185 8 C -0.183 4.183 9 C -0.043 4.043 10 O -0.321 6.321 11 N -0.321 5.321 12 C -0.043 4.043 13 C -0.003 4.003 14 C -0.587 4.587 15 H 0.076 0.924 16 C -0.196 4.196 17 N -0.571 5.571 18 Si 0.792 3.208 19 H -0.205 1.205 20 H -0.192 1.192 21 H -0.191 1.191 22 H 0.093 0.907 23 H 0.081 0.919 24 H 0.056 0.944 25 H 0.111 0.889 26 H 0.107 0.893 27 H 0.100 0.900 28 H 0.112 0.888 29 H 0.115 0.885 30 H 0.103 0.897 31 H 0.075 0.925 32 H 0.121 0.879 33 H 0.153 0.847 34 H 0.074 0.926 35 H 0.026 0.974 36 H 0.007 0.993 37 H 0.015 0.985 38 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 0.144 1.003 -19.723 19.749 hybrid contribution 1.106 0.751 0.908 1.616 sum 1.250 1.753 -18.815 18.938 Atomic orbital electron populations 1.21748 0.93871 1.02264 1.01244 1.21566 0.96389 0.95586 0.89505 0.95490 1.21907 0.93103 1.02083 0.97373 1.22917 0.95946 0.82383 0.98155 0.93407 1.22995 1.01350 0.98492 0.95645 1.23106 1.01815 0.95260 0.98122 1.23761 0.87709 1.00920 0.91919 1.88895 1.44648 1.26065 1.72503 1.60704 1.33075 1.33669 1.04671 1.21771 0.98724 0.93162 0.90625 1.18899 0.94227 0.95072 0.92107 1.21573 1.44388 0.96898 0.95802 0.92444 1.25977 0.94595 0.96912 1.02079 1.70102 1.45028 1.16386 1.25544 0.85463 0.78977 0.78595 0.77772 1.20476 1.19242 1.19117 0.90697 0.91930 0.94374 0.88915 0.89295 0.89996 0.88797 0.88462 0.89731 0.92549 0.87934 0.84690 0.92584 0.97369 0.99283 0.98527 0.92650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.72 9.41 71.98 0.68 -3.05 16 2 C 0.08 2.47 2.61 44.91 0.12 2.59 16 3 H 0.03 0.96 7.44 -2.38 -0.02 0.94 16 4 C -0.11 -2.58 4.29 30.59 0.13 -2.45 16 5 C 0.06 1.59 3.31 30.97 0.10 1.69 16 6 H 0.05 1.39 6.30 -2.39 -0.02 1.37 16 7 C -0.15 -2.55 6.64 31.58 0.21 -2.34 16 8 C -0.15 -2.16 7.15 31.90 0.23 -1.94 16 9 C 0.03 0.66 7.72 72.67 0.56 1.23 16 10 O -0.40 -11.34 10.76 -148.98 -1.60 -12.94 16 11 N -0.69 -26.49 6.31 -491.57 -3.10 -29.59 16 12 C 0.09 3.99 5.42 86.30 0.47 4.46 16 13 C 0.03 1.94 5.23 29.85 0.16 2.10 16 14 C -0.55 -32.76 9.11 25.60 0.23 -32.52 16 15 H 0.06 3.30 7.74 -2.91 -0.02 3.28 16 16 C 0.00 0.15 5.46 84.66 0.46 0.61 16 17 N -0.93 -58.14 13.29 21.45 0.28 -57.85 16 18 Si 0.97 45.44 29.54 68.60 2.03 47.46 16 19 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 20 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 21 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 22 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 23 H 0.06 1.69 8.14 -2.38 -0.02 1.67 16 24 H 0.04 1.18 7.45 -2.39 -0.02 1.16 16 25 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 26 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 27 H 0.08 1.32 8.14 -2.38 -0.02 1.30 16 28 H 0.09 1.35 7.70 -2.39 -0.02 1.33 16 29 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 33 H 0.33 12.62 6.42 -89.69 -0.58 12.05 16 34 H 0.06 2.59 7.44 -2.39 -0.02 2.57 16 35 H 0.01 0.38 8.06 -2.39 -0.02 0.36 16 36 H -0.01 -0.67 8.14 -2.38 -0.02 -0.69 16 37 H 0.00 -0.23 8.14 -2.39 -0.02 -0.25 16 38 H 0.26 15.46 8.31 -92.71 -0.77 14.69 16 Total: -1.00 -68.31 303.99 1.39 -66.92 By element: Atomic # 1 Polarization: 15.19 SS G_CDS: 0.43 Total: 15.63 kcal Atomic # 6 Polarization: -32.97 SS G_CDS: 3.35 Total: -29.62 kcal Atomic # 7 Polarization: -84.63 SS G_CDS: -2.82 Total: -87.45 kcal Atomic # 8 Polarization: -11.34 SS G_CDS: -1.60 Total: -12.94 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 2.03 Total: 47.46 kcal Total: -68.31 1.39 -66.92 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308663121.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.947 kcal (2) G-P(sol) polarization free energy of solvation -68.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds