Wall clock time and date at job start Mon Mar 30 2020 03:05:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.49561 * 2 1 4 4 C 1.53098 * 109.47861 * 120.03136 * 2 1 3 5 5 C 1.53180 * 109.16075 * 177.59094 * 4 2 1 6 6 H 1.08999 * 109.54515 * 62.88494 * 5 4 2 7 7 C 1.52997 * 109.53935 * 183.15144 * 5 4 2 8 8 N 1.46902 * 109.46948 * 184.55269 * 7 5 4 9 9 C 1.46901 * 111.00111 * 179.97438 * 8 7 5 10 10 C 1.52998 * 109.47562 * 180.02562 * 9 8 7 11 11 C 1.50691 * 109.47576 * 180.02562 * 10 9 8 12 12 H 1.08001 * 119.99998 * 359.97438 * 11 10 9 13 13 C 1.37882 * 120.00152 * 180.02562 * 11 10 9 14 14 N 1.31513 * 119.99884 * 179.97438 * 13 11 10 15 15 Si 1.86803 * 120.00000 * 359.97438 * 13 11 10 16 16 H 1.48497 * 109.47113 * 90.00023 * 15 13 11 17 17 H 1.48496 * 109.46798 * 210.00081 * 15 13 11 18 18 H 1.48500 * 109.46771 * 329.99805 * 15 13 11 19 19 C 1.53175 * 109.03606 * 303.01560 * 5 4 2 20 20 C 1.53092 * 109.16344 * 56.98567 * 19 5 4 21 21 O 1.42905 * 109.48128 * 239.96896 * 2 1 3 22 22 H 1.08993 * 109.47249 * 180.02562 * 1 2 3 23 23 H 1.08996 * 109.46705 * 300.03025 * 1 2 3 24 24 H 1.09004 * 109.46593 * 60.02691 * 1 2 3 25 25 H 1.08996 * 109.52270 * 57.68339 * 4 2 1 26 26 H 1.08995 * 109.57012 * 297.52187 * 4 2 1 27 27 H 1.08997 * 109.47404 * 304.55112 * 7 5 4 28 28 H 1.09006 * 109.47326 * 64.55601 * 7 5 4 29 29 H 1.00897 * 111.00320 * 303.95158 * 8 7 5 30 30 H 1.09003 * 109.47586 * 300.00520 * 9 8 7 31 31 H 1.09001 * 109.47014 * 60.00434 * 9 8 7 32 32 H 1.09003 * 109.46954 * 300.00735 * 10 9 8 33 33 H 1.08998 * 109.47291 * 59.99592 * 10 9 8 34 34 H 0.97005 * 120.00197 * 179.97438 * 14 13 11 35 35 H 1.09004 * 109.52714 * 297.07587 * 19 5 4 36 36 H 1.09001 * 109.57654 * 176.92317 * 19 5 4 37 37 H 1.08997 * 109.48111 * 182.40965 * 20 19 5 38 38 H 1.09000 * 109.48212 * 62.37239 * 20 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0405 -0.7224 1.2496 5 6 3.5711 -0.7710 1.2122 6 1 3.9690 0.2434 1.2408 7 6 4.0876 -1.5596 2.4172 8 7 5.5557 -1.5131 2.4399 9 6 6.0884 -2.2611 3.5866 10 6 7.6167 -2.1895 3.5769 11 6 8.1631 -2.9572 4.7527 12 1 7.4879 -3.4470 5.4388 13 6 9.5251 -3.0336 4.9534 14 7 10.0020 -3.7033 5.9800 15 14 10.6930 -2.1860 3.7672 16 1 10.9526 -0.8002 4.2336 17 1 11.9727 -2.9372 3.7110 18 1 10.0821 -2.1468 2.4143 19 6 4.0176 -1.4602 -0.0808 20 6 3.4308 -0.7094 -1.2790 21 8 2.0066 -0.6742 -1.1664 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3632 0.5143 0.8897 24 1 -0.3633 0.5134 -0.8903 25 1 1.6442 -1.7375 1.2709 26 1 1.7149 -0.1853 2.1404 27 1 3.6960 -1.1197 3.3343 28 1 3.7581 -2.5959 2.3417 29 1 5.9419 -1.8562 1.5732 30 1 5.7106 -1.8257 4.5117 31 1 5.7728 -3.3022 3.5196 32 1 7.9949 -2.6246 2.6518 33 1 7.9321 -1.1483 3.6440 34 1 10.9602 -3.7574 6.1210 35 1 3.6613 -2.4903 -0.0864 36 1 5.1058 -1.4510 -0.1426 37 1 3.7100 -1.2204 -2.2004 38 1 3.8194 0.3089 -1.2958 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308684395.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:39 Heat of formation + Delta-G solvation = -74.355339 kcal Electronic energy + Delta-G solvation = -15801.927956 eV Core-core repulsion = 13257.134460 eV Total energy + Delta-G solvation = -2544.793496 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.74230 -36.57108 -34.02715 -32.96863 -32.39619 -29.86799 -28.16488 -25.80042 -23.56188 -23.22732 -21.23611 -20.47878 -19.94518 -16.77414 -16.45829 -16.03415 -15.75938 -14.91020 -14.59541 -14.18429 -14.04675 -13.56854 -13.23028 -12.75714 -12.65643 -12.51105 -12.46490 -11.99341 -11.73041 -11.32776 -11.25693 -11.13162 -10.88883 -10.62919 -10.36579 -10.14797 -9.84100 -9.79160 -9.44914 -9.22902 -8.53769 -7.94819 -6.04504 -4.02914 3.32741 3.39400 3.44068 3.61163 4.36719 4.46100 4.62567 4.74524 4.81721 4.86991 5.05386 5.12213 5.29540 5.30012 5.38210 5.43958 5.46489 5.55102 5.71801 5.75669 5.82171 5.86398 5.95723 6.00874 6.08220 6.20637 6.25273 6.36875 6.77367 7.09640 7.12738 7.38204 7.59889 7.75327 7.90390 8.53190 8.99515 9.57823 11.08866 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.056607 B = 0.004366 C = 0.004148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 494.521004 B = 6411.183572 C = 6748.576957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.086 3.914 3 H 0.057 0.943 4 C -0.144 4.144 5 C -0.088 4.088 6 H 0.079 0.921 7 C 0.065 3.935 8 N -0.695 5.695 9 C 0.073 3.927 10 C -0.010 4.010 11 C -0.522 4.522 12 H 0.071 0.929 13 C 0.066 3.934 14 N -0.904 5.904 15 Si 0.883 3.117 16 H -0.276 1.276 17 H -0.289 1.289 18 H -0.266 1.266 19 C -0.154 4.154 20 C 0.064 3.936 21 O -0.384 6.384 22 H 0.062 0.938 23 H 0.070 0.930 24 H 0.061 0.939 25 H 0.070 0.930 26 H 0.073 0.927 27 H 0.069 0.931 28 H 0.025 0.975 29 H 0.333 0.667 30 H 0.064 0.936 31 H 0.021 0.979 32 H 0.012 0.988 33 H 0.021 0.979 34 H 0.263 0.737 35 H 0.068 0.932 36 H 0.078 0.922 37 H 0.092 0.908 38 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.421 7.368 -13.502 22.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.029 3.971 3 H 0.075 0.925 4 C -0.182 4.182 5 C -0.107 4.107 6 H 0.098 0.902 7 C -0.065 4.065 8 N -0.327 5.327 9 C -0.055 4.055 10 C -0.048 4.048 11 C -0.560 4.560 12 H 0.089 0.911 13 C -0.135 4.135 14 N -0.543 5.543 15 Si 0.711 3.289 16 H -0.202 1.202 17 H -0.215 1.215 18 H -0.190 1.190 19 C -0.192 4.192 20 C -0.013 4.013 21 O -0.303 6.303 22 H 0.081 0.919 23 H 0.089 0.911 24 H 0.080 0.920 25 H 0.089 0.911 26 H 0.092 0.908 27 H 0.088 0.912 28 H 0.043 0.957 29 H 0.151 0.849 30 H 0.082 0.918 31 H 0.039 0.961 32 H 0.031 0.969 33 H 0.039 0.961 34 H 0.073 0.927 35 H 0.087 0.913 36 H 0.097 0.903 37 H 0.110 0.890 38 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -16.355 7.831 -13.208 22.433 hybrid contribution 0.844 -0.491 -0.495 1.095 sum -15.511 7.339 -13.703 21.960 Atomic orbital electron populations 1.21766 0.93287 1.02867 1.02266 1.22078 0.94813 0.95007 0.85239 0.92540 1.22250 0.95810 1.01889 0.98259 1.21233 0.94407 1.00585 0.94481 0.90217 1.21930 0.89384 0.97561 0.97586 1.60633 1.04861 1.60277 1.06892 1.21955 0.97634 0.94005 0.91938 1.19543 0.90756 0.97194 0.97260 1.21078 0.92522 1.32518 1.09908 0.91132 1.25018 0.98316 0.94930 0.95211 1.69918 1.13300 1.42077 1.29015 0.86719 0.80177 0.79748 0.82269 1.20227 1.21482 1.19019 1.22276 1.01607 1.00304 0.95001 1.22544 0.80763 0.99626 0.98361 1.87901 1.21256 1.78090 1.43090 0.91863 0.91110 0.92021 0.91118 0.90812 0.91233 0.95708 0.84864 0.91781 0.96050 0.96924 0.96109 0.92718 0.91300 0.90345 0.89026 0.93213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.16 9.56 37.16 0.36 -0.80 16 2 C 0.09 0.84 3.27 -26.68 -0.09 0.76 16 3 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 4 C -0.14 -1.45 4.71 -26.59 -0.13 -1.57 16 5 C -0.09 -1.02 2.49 -90.44 -0.22 -1.24 16 6 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 7 C 0.07 0.91 5.15 -3.82 -0.02 0.89 16 8 N -0.70 -11.78 6.50 -113.78 -0.74 -12.52 16 9 C 0.07 1.50 5.62 -3.82 -0.02 1.48 16 10 C -0.01 -0.24 4.30 -27.89 -0.12 -0.36 16 11 C -0.52 -15.14 9.66 -34.44 -0.33 -15.47 16 12 H 0.07 2.19 7.99 -52.49 -0.42 1.77 16 13 C 0.07 1.96 5.47 -17.82 -0.10 1.87 16 14 N -0.90 -28.19 13.96 55.43 0.77 -27.42 16 15 Si 0.88 22.06 27.47 -169.99 -4.67 17.39 16 16 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 17 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 18 H -0.27 -6.38 6.54 56.52 0.37 -6.01 16 19 C -0.15 -1.69 5.11 -26.59 -0.14 -1.82 16 20 C 0.06 0.64 6.84 37.20 0.25 0.90 16 21 O -0.38 -4.43 10.41 -35.23 -0.37 -4.79 16 22 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 23 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 24 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 28 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.33 5.34 7.06 -39.29 -0.28 5.06 16 30 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 31 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.01 0.30 7.20 -51.93 -0.37 -0.07 16 33 H 0.02 0.51 7.57 -51.93 -0.39 0.12 16 34 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 35 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 36 H 0.08 0.86 6.84 -51.93 -0.36 0.51 16 37 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 38 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 LS Contribution 300.23 15.07 4.52 4.52 Total: -1.00 -31.05 300.23 -7.94 -38.99 By element: Atomic # 1 Polarization: 6.12 SS G_CDS: -6.90 Total: -0.79 kcal Atomic # 6 Polarization: -14.83 SS G_CDS: -0.55 Total: -15.38 kcal Atomic # 7 Polarization: -39.97 SS G_CDS: 0.03 Total: -39.94 kcal Atomic # 8 Polarization: -4.43 SS G_CDS: -0.37 Total: -4.79 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -4.67 Total: 17.39 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -31.05 -7.94 -38.99 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308684395.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.368 kcal (2) G-P(sol) polarization free energy of solvation -31.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds