Wall clock time and date at job start Mon Mar 30 2020 03:05:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.49561 * 2 1 4 4 C 1.53098 * 109.47861 * 120.03136 * 2 1 3 5 5 C 1.53180 * 109.16075 * 177.59094 * 4 2 1 6 6 H 1.08999 * 109.54515 * 62.88494 * 5 4 2 7 7 C 1.52997 * 109.53935 * 183.15144 * 5 4 2 8 8 N 1.46902 * 109.46948 * 184.55269 * 7 5 4 9 9 C 1.46901 * 111.00111 * 179.97438 * 8 7 5 10 10 C 1.52998 * 109.47562 * 180.02562 * 9 8 7 11 11 C 1.50691 * 109.47576 * 180.02562 * 10 9 8 12 12 H 1.08001 * 119.99998 * 359.97438 * 11 10 9 13 13 C 1.37882 * 120.00152 * 180.02562 * 11 10 9 14 14 N 1.31513 * 119.99884 * 179.97438 * 13 11 10 15 15 Si 1.86803 * 120.00000 * 359.97438 * 13 11 10 16 16 H 1.48497 * 109.47113 * 90.00023 * 15 13 11 17 17 H 1.48496 * 109.46798 * 210.00081 * 15 13 11 18 18 H 1.48500 * 109.46771 * 329.99805 * 15 13 11 19 19 C 1.53175 * 109.03606 * 303.01560 * 5 4 2 20 20 C 1.53092 * 109.16344 * 56.98567 * 19 5 4 21 21 O 1.42905 * 109.48128 * 239.96896 * 2 1 3 22 22 H 1.08993 * 109.47249 * 180.02562 * 1 2 3 23 23 H 1.08996 * 109.46705 * 300.03025 * 1 2 3 24 24 H 1.09004 * 109.46593 * 60.02691 * 1 2 3 25 25 H 1.08996 * 109.52270 * 57.68339 * 4 2 1 26 26 H 1.08995 * 109.57012 * 297.52187 * 4 2 1 27 27 H 1.08997 * 109.47404 * 304.55112 * 7 5 4 28 28 H 1.09006 * 109.47326 * 64.55601 * 7 5 4 29 29 H 1.00897 * 111.00320 * 303.95158 * 8 7 5 30 30 H 1.09003 * 109.47586 * 300.00520 * 9 8 7 31 31 H 1.09001 * 109.47014 * 60.00434 * 9 8 7 32 32 H 1.09003 * 109.46954 * 300.00735 * 10 9 8 33 33 H 1.08998 * 109.47291 * 59.99592 * 10 9 8 34 34 H 0.97005 * 120.00197 * 179.97438 * 14 13 11 35 35 H 1.09004 * 109.52714 * 297.07587 * 19 5 4 36 36 H 1.09001 * 109.57654 * 176.92317 * 19 5 4 37 37 H 1.08997 * 109.48111 * 182.40965 * 20 19 5 38 38 H 1.09000 * 109.48212 * 62.37239 * 20 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0405 -0.7224 1.2496 5 6 3.5711 -0.7710 1.2122 6 1 3.9690 0.2434 1.2408 7 6 4.0876 -1.5596 2.4172 8 7 5.5557 -1.5131 2.4399 9 6 6.0884 -2.2611 3.5866 10 6 7.6167 -2.1895 3.5769 11 6 8.1631 -2.9572 4.7527 12 1 7.4879 -3.4470 5.4388 13 6 9.5251 -3.0336 4.9534 14 7 10.0020 -3.7033 5.9800 15 14 10.6930 -2.1860 3.7672 16 1 10.9526 -0.8002 4.2336 17 1 11.9727 -2.9372 3.7110 18 1 10.0821 -2.1468 2.4143 19 6 4.0176 -1.4602 -0.0808 20 6 3.4308 -0.7094 -1.2790 21 8 2.0066 -0.6742 -1.1664 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3632 0.5143 0.8897 24 1 -0.3633 0.5134 -0.8903 25 1 1.6442 -1.7375 1.2709 26 1 1.7149 -0.1853 2.1404 27 1 3.6960 -1.1197 3.3343 28 1 3.7581 -2.5959 2.3417 29 1 5.9419 -1.8562 1.5732 30 1 5.7106 -1.8257 4.5117 31 1 5.7728 -3.3022 3.5196 32 1 7.9949 -2.6246 2.6518 33 1 7.9321 -1.1483 3.6440 34 1 10.9602 -3.7574 6.1210 35 1 3.6613 -2.4903 -0.0864 36 1 5.1058 -1.4510 -0.1426 37 1 3.7100 -1.2204 -2.2004 38 1 3.8194 0.3089 -1.2958 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308684395.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:39 Heat of formation + Delta-G solvation = -95.434623 kcal Electronic energy + Delta-G solvation = -15802.842022 eV Core-core repulsion = 13257.134460 eV Total energy + Delta-G solvation = -2545.707562 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.58502 -37.86757 -35.57366 -34.29417 -33.63209 -31.58567 -29.07618 -27.15974 -24.99700 -24.24618 -22.29803 -22.07987 -20.94447 -18.96970 -17.25639 -17.08670 -16.81163 -16.37032 -15.89932 -15.41542 -15.29853 -14.95886 -14.51975 -14.45877 -13.95923 -13.47775 -13.31634 -13.11703 -12.91894 -12.75349 -12.66094 -12.16935 -12.01914 -11.88659 -11.75002 -11.68901 -11.43604 -11.37337 -11.11802 -10.78377 -10.36980 -9.35801 -8.31298 -6.36406 1.37231 1.38489 1.51212 2.36034 2.87630 3.04193 3.22439 3.75132 3.81982 3.93754 4.02425 4.25933 4.34960 4.38696 4.42012 4.51321 4.59524 4.62941 4.70722 4.83787 4.85234 4.87566 4.93578 4.96490 5.08989 5.12163 5.18587 5.26527 5.32902 5.43908 5.47158 5.61329 6.11023 6.23686 6.33680 6.50693 6.72254 7.28665 8.85462 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.056607 B = 0.004366 C = 0.004148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 494.521004 B = 6411.183572 C = 6748.576957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.082 3.918 3 H 0.062 0.938 4 C -0.139 4.139 5 C -0.082 4.082 6 H 0.078 0.922 7 C 0.066 3.934 8 N -0.693 5.693 9 C 0.085 3.915 10 C -0.004 4.004 11 C -0.537 4.537 12 H 0.030 0.970 13 C 0.004 3.996 14 N -0.951 5.951 15 Si 0.957 3.043 16 H -0.267 1.267 17 H -0.283 1.283 18 H -0.246 1.246 19 C -0.152 4.152 20 C 0.063 3.937 21 O -0.401 6.401 22 H 0.058 0.942 23 H 0.086 0.914 24 H 0.064 0.936 25 H 0.065 0.935 26 H 0.084 0.916 27 H 0.068 0.932 28 H 0.024 0.976 29 H 0.341 0.659 30 H 0.055 0.945 31 H 0.014 0.986 32 H 0.020 0.980 33 H 0.022 0.978 34 H 0.267 0.733 35 H 0.062 0.938 36 H 0.078 0.922 37 H 0.103 0.897 38 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.756 8.786 -15.412 24.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.025 3.975 3 H 0.080 0.920 4 C -0.178 4.178 5 C -0.101 4.101 6 H 0.096 0.904 7 C -0.063 4.063 8 N -0.325 5.325 9 C -0.044 4.044 10 C -0.042 4.042 11 C -0.575 4.575 12 H 0.049 0.951 13 C -0.193 4.193 14 N -0.592 5.592 15 Si 0.780 3.220 16 H -0.192 1.192 17 H -0.209 1.209 18 H -0.169 1.169 19 C -0.190 4.190 20 C -0.013 4.013 21 O -0.321 6.321 22 H 0.077 0.923 23 H 0.105 0.895 24 H 0.083 0.917 25 H 0.084 0.916 26 H 0.103 0.897 27 H 0.087 0.913 28 H 0.042 0.958 29 H 0.160 0.840 30 H 0.074 0.926 31 H 0.033 0.967 32 H 0.038 0.962 33 H 0.041 0.959 34 H 0.076 0.924 35 H 0.080 0.920 36 H 0.096 0.904 37 H 0.121 0.879 38 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -16.719 9.254 -15.132 24.375 hybrid contribution 0.879 -0.976 0.167 1.324 sum -15.840 8.278 -14.965 23.310 Atomic orbital electron populations 1.21779 0.92044 1.02893 1.03255 1.22221 0.95864 0.95005 0.84442 0.91966 1.22219 0.94529 1.01906 0.99106 1.21162 0.95426 0.99929 0.93545 0.90390 1.21993 0.87365 0.98036 0.98895 1.60546 1.06733 1.59231 1.05965 1.21634 0.95387 0.94100 0.93260 1.19430 0.93167 0.96244 0.95313 1.21420 0.92479 1.32753 1.10861 0.95124 1.26039 1.00393 0.95648 0.97193 1.70069 1.14028 1.43821 1.31249 0.85562 0.77514 0.78618 0.80332 1.19203 1.20882 1.16938 1.22253 1.01600 1.00005 0.95151 1.22616 0.80246 1.00070 0.98393 1.87891 1.21916 1.78415 1.43838 0.92311 0.89482 0.91716 0.91637 0.89712 0.91315 0.95784 0.84033 0.92635 0.96746 0.96186 0.95915 0.92383 0.91963 0.90360 0.87854 0.92470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.99 9.56 71.98 0.69 -1.30 16 2 C 0.08 1.43 3.27 30.63 0.10 1.53 16 3 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 4 C -0.14 -2.53 4.71 30.69 0.14 -2.39 16 5 C -0.08 -1.73 2.49 -10.68 -0.03 -1.76 16 6 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 7 C 0.07 1.75 5.15 86.30 0.44 2.19 16 8 N -0.69 -22.37 6.50 -513.88 -3.34 -25.71 16 9 C 0.09 3.46 5.62 86.30 0.49 3.95 16 10 C 0.00 -0.18 4.30 29.84 0.13 -0.05 16 11 C -0.54 -31.64 9.66 25.60 0.25 -31.39 16 12 H 0.03 1.98 7.99 -2.91 -0.02 1.96 16 13 C 0.00 0.25 5.47 84.66 0.46 0.71 16 14 N -0.95 -60.40 13.96 21.45 0.30 -60.10 16 15 Si 0.96 44.83 27.47 68.60 1.88 46.71 16 16 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 17 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 18 H -0.25 -10.66 6.54 99.48 0.65 -10.01 16 19 C -0.15 -3.05 5.11 30.68 0.16 -2.90 16 20 C 0.06 1.15 6.84 72.01 0.49 1.64 16 21 O -0.40 -8.48 10.41 -148.98 -1.55 -10.04 16 22 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 23 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 24 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 25 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 26 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 27 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 28 H 0.02 0.65 8.14 -2.38 -0.02 0.63 16 29 H 0.34 10.23 7.06 -89.70 -0.63 9.59 16 30 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 31 H 0.01 0.60 8.14 -2.39 -0.02 0.58 16 32 H 0.02 0.92 7.20 -2.39 -0.02 0.91 16 33 H 0.02 1.08 7.57 -2.39 -0.02 1.06 16 34 H 0.27 15.75 8.31 -92.70 -0.77 14.98 16 35 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 36 H 0.08 1.56 6.84 -2.39 -0.02 1.55 16 37 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 38 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 Total: -1.00 -66.35 300.23 0.93 -65.42 By element: Atomic # 1 Polarization: 13.17 SS G_CDS: 0.31 Total: 13.48 kcal Atomic # 6 Polarization: -33.09 SS G_CDS: 3.32 Total: -29.77 kcal Atomic # 7 Polarization: -82.76 SS G_CDS: -3.04 Total: -85.80 kcal Atomic # 8 Polarization: -8.48 SS G_CDS: -1.55 Total: -10.04 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 1.88 Total: 46.71 kcal Total: -66.35 0.93 -65.42 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308684395.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.019 kcal (2) G-P(sol) polarization free energy of solvation -66.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds