Wall clock time and date at job start Mon Mar 30 2020 03:53:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47412 * 2 1 4 4 O 1.42902 * 109.46874 * 239.99512 * 2 1 3 5 5 C 1.53005 * 109.47049 * 120.00003 * 2 1 3 6 6 C 1.52997 * 109.46923 * 184.99521 * 5 2 1 7 7 C 1.53005 * 109.46923 * 180.02562 * 6 5 2 8 8 N 1.46900 * 109.47267 * 180.02562 * 7 6 5 9 9 C 1.46897 * 111.00130 * 169.99869 * 8 7 6 10 10 C 1.50694 * 109.47241 * 285.61877 * 9 8 7 11 11 H 1.07999 * 120.00043 * 4.85216 * 10 9 8 12 12 C 1.37879 * 120.00006 * 184.84612 * 10 9 8 13 13 N 1.31518 * 119.99989 * 0.02562 * 12 10 9 14 14 Si 1.86798 * 119.99735 * 179.97438 * 12 10 9 15 15 H 1.48498 * 109.47483 * 0.02562 * 14 12 10 16 16 H 1.48508 * 109.46862 * 120.00386 * 14 12 10 17 17 H 1.48500 * 109.47436 * 240.00036 * 14 12 10 18 18 C 1.46905 * 110.99430 * 293.95021 * 8 7 6 19 19 C 1.53003 * 117.50096 * 246.44198 * 18 8 7 20 20 C 1.53003 * 60.00040 * 252.51380 * 19 18 8 21 21 H 1.08998 * 109.47412 * 180.02562 * 1 2 3 22 22 H 1.09002 * 109.47162 * 300.00362 * 1 2 3 23 23 H 1.09001 * 109.47371 * 59.99846 * 1 2 3 24 24 H 0.96695 * 114.00313 * 300.00349 * 4 2 1 25 25 H 1.09000 * 109.47106 * 304.99758 * 5 2 1 26 26 H 1.08997 * 109.47003 * 64.99366 * 5 2 1 27 27 H 1.08991 * 109.47359 * 299.99844 * 6 5 2 28 28 H 1.08997 * 109.47179 * 60.00594 * 6 5 2 29 29 H 1.09000 * 109.47106 * 300.00237 * 7 6 5 30 30 H 1.08997 * 109.47003 * 59.99844 * 7 6 5 31 31 H 1.09004 * 109.46731 * 45.62314 * 9 8 7 32 32 H 1.09004 * 109.47261 * 165.61447 * 9 8 7 33 33 H 0.96998 * 119.99515 * 179.97438 * 13 12 10 34 34 H 1.09000 * 115.55213 * 32.15322 * 18 8 7 35 35 H 1.09001 * 117.49504 * 359.97438 * 19 18 8 36 36 H 1.08998 * 117.49854 * 145.02039 * 19 18 8 37 37 H 1.09001 * 117.49884 * 252.51141 * 20 19 18 38 38 H 1.08998 * 117.51905 * 107.47596 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0063 -0.6738 -1.1668 5 6 2.0400 -0.7213 1.2493 6 6 3.5648 -0.6134 1.3136 7 6 4.0748 -1.3352 2.5626 8 7 5.5388 -1.2312 2.6248 9 6 6.0455 -1.7016 3.9209 10 6 5.7496 -0.6711 4.9799 11 1 5.1684 0.2052 4.7333 12 6 6.2207 -0.8470 6.2637 13 7 6.9287 -1.9138 6.5639 14 14 5.8544 0.4308 7.5761 15 1 5.0460 1.5282 6.9868 16 1 5.0957 -0.2020 8.6849 17 1 7.1300 0.9816 8.1005 18 6 6.1661 -1.9641 1.5169 19 6 7.0009 -3.1972 1.8685 20 6 7.6914 -1.9114 1.4090 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 -0.3634 0.5139 -0.8900 24 1 1.7209 -1.5953 -1.2329 25 1 1.6054 -0.2617 2.1370 26 1 1.7515 -1.7715 1.2057 27 1 3.9993 -1.0729 0.4260 28 1 3.8532 0.4368 1.3573 29 1 3.6403 -0.8761 3.4505 30 1 3.7864 -2.3854 2.5185 31 1 5.5585 -2.6412 4.1820 32 1 7.1225 -1.8565 3.8555 33 1 7.2605 -2.0373 7.4670 34 1 5.5965 -1.9898 0.5879 35 1 7.0851 -3.4642 2.9219 36 1 6.9805 -4.0344 1.1709 37 1 8.1252 -1.9028 0.4090 38 1 8.2293 -1.3326 2.1598 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379619251.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:53:40 Heat of formation + Delta-G solvation = -38.076013 kcal Electronic energy + Delta-G solvation = -16078.290672 eV Core-core repulsion = 13535.070365 eV Total energy + Delta-G solvation = -2543.220307 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 1.53 seconds Orbital eigenvalues (eV) -38.40090 -37.68353 -34.21763 -32.99716 -31.80123 -30.01538 -27.03382 -24.92415 -22.63836 -21.77543 -21.63314 -20.99946 -18.70464 -16.74834 -16.26047 -15.99872 -15.23899 -14.84922 -14.43516 -14.16005 -13.76452 -13.03859 -12.84196 -12.69400 -12.16399 -12.00904 -11.79834 -11.37674 -11.17156 -11.01901 -10.83325 -10.71733 -10.66894 -10.53566 -10.34564 -10.03658 -9.84110 -9.75550 -9.44144 -9.08564 -8.40957 -7.05428 -6.01578 -4.02492 3.31137 3.38600 3.43591 4.31332 4.41037 4.49853 4.71842 4.97487 5.04020 5.12426 5.34155 5.36302 5.53610 5.56484 5.57494 5.69185 5.78209 5.83261 5.96963 6.03176 6.07808 6.21423 6.23175 6.34484 6.39314 6.65197 6.73727 6.82250 6.83938 7.31279 7.34706 7.61182 7.83712 8.14100 8.26046 8.57450 9.05449 9.61424 11.09110 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.021908 B = 0.006844 C = 0.005440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1277.791289 B = 4090.180579 C = 5145.456381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.101 3.899 3 H 0.098 0.902 4 O -0.564 6.564 5 C -0.150 4.150 6 C -0.111 4.111 7 C 0.066 3.934 8 N -0.505 5.505 9 C 0.188 3.812 10 C -0.504 4.504 11 H 0.063 0.937 12 C 0.054 3.946 13 N -0.899 5.899 14 Si 0.897 3.103 15 H -0.272 1.272 16 H -0.285 1.285 17 H -0.284 1.284 18 C 0.026 3.974 19 C -0.227 4.227 20 C -0.176 4.176 21 H 0.056 0.944 22 H 0.065 0.935 23 H 0.059 0.941 24 H 0.371 0.629 25 H 0.072 0.928 26 H 0.061 0.939 27 H 0.061 0.939 28 H 0.066 0.934 29 H 0.080 0.920 30 H 0.018 0.982 31 H -0.010 1.010 32 H 0.039 0.961 33 H 0.260 0.740 34 H 0.106 0.894 35 H 0.106 0.894 36 H 0.079 0.921 37 H 0.085 0.915 38 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.012 0.272 -11.552 14.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C 0.042 3.958 3 H 0.116 0.884 4 O -0.369 6.369 5 C -0.188 4.188 6 C -0.149 4.149 7 C -0.063 4.063 8 N -0.227 5.227 9 C 0.063 3.937 10 C -0.543 4.543 11 H 0.081 0.919 12 C -0.147 4.147 13 N -0.539 5.539 14 Si 0.725 3.275 15 H -0.197 1.197 16 H -0.212 1.212 17 H -0.210 1.210 18 C -0.084 4.084 19 C -0.267 4.267 20 C -0.214 4.214 21 H 0.075 0.925 22 H 0.084 0.916 23 H 0.078 0.922 24 H 0.218 0.782 25 H 0.090 0.910 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.085 0.915 29 H 0.098 0.902 30 H 0.037 0.963 31 H 0.008 0.992 32 H 0.057 0.943 33 H 0.070 0.930 34 H 0.124 0.876 35 H 0.124 0.876 36 H 0.098 0.902 37 H 0.103 0.897 38 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -8.539 1.292 -11.531 14.406 hybrid contribution -0.544 -0.833 1.124 1.502 sum -9.083 0.459 -10.406 13.821 Atomic orbital electron populations 1.22515 0.96937 1.02309 1.02505 1.21964 0.92229 0.96940 0.84679 0.88448 1.86583 1.77348 1.28794 1.44192 1.22288 0.97596 1.00694 0.98245 1.21571 0.93164 1.01778 0.98399 1.21975 0.88994 0.97268 0.98015 1.61992 1.04066 1.53133 1.03467 1.19857 0.96038 0.94276 0.83493 1.21218 1.33116 1.06669 0.93279 0.91921 1.24984 0.95306 0.95746 0.98622 1.69967 1.36533 1.27371 1.20050 0.86460 0.78047 0.81552 0.81472 1.19676 1.21159 1.21015 1.22674 0.92525 0.96461 0.96785 1.23573 1.08046 0.92141 1.02913 1.22973 0.95865 1.00916 1.01663 0.92499 0.91554 0.92165 0.78228 0.90961 0.92039 0.91994 0.91490 0.90208 0.96330 0.99192 0.94271 0.93017 0.87641 0.87612 0.90226 0.89692 0.88432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.64 9.53 37.16 0.35 -1.28 16 2 C 0.10 1.10 3.59 -26.73 -0.10 1.00 16 3 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 4 O -0.56 -6.56 12.87 -35.23 -0.45 -7.01 16 5 C -0.15 -1.83 4.89 -26.73 -0.13 -1.96 16 6 C -0.11 -1.72 5.10 -26.73 -0.14 -1.85 16 7 C 0.07 1.26 4.79 -3.82 -0.02 1.24 16 8 N -0.50 -11.11 4.65 -228.08 -1.06 -12.17 16 9 C 0.19 4.92 3.38 -4.98 -0.02 4.91 16 10 C -0.50 -14.27 8.58 -34.44 -0.30 -14.57 16 11 H 0.06 1.77 7.57 -52.49 -0.40 1.37 16 12 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 13 N -0.90 -26.81 13.29 55.43 0.74 -26.07 16 14 Si 0.90 21.76 29.54 -169.99 -5.02 16.74 16 15 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 16 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 17 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 18 C 0.03 0.49 5.83 -67.71 -0.39 0.09 16 19 C -0.23 -4.23 9.56 -26.73 -0.26 -4.48 16 20 C -0.18 -3.21 9.91 -26.73 -0.26 -3.47 16 21 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 22 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 23 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 24 H 0.37 3.02 9.04 45.56 0.41 3.44 16 25 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 26 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.06 0.95 6.08 -51.93 -0.32 0.64 16 28 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 29 H 0.08 1.66 7.21 -51.93 -0.37 1.29 16 30 H 0.02 0.35 8.12 -51.93 -0.42 -0.07 16 31 H -0.01 -0.27 7.82 -51.93 -0.41 -0.68 16 32 H 0.04 1.10 5.63 -51.93 -0.29 0.80 16 33 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 34 H 0.11 1.79 6.34 -51.93 -0.33 1.46 16 35 H 0.11 2.27 6.02 -51.93 -0.31 1.96 16 36 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 37 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 38 H 0.10 1.98 7.48 -51.93 -0.39 1.59 16 LS Contribution 305.20 15.07 4.60 4.60 Total: -1.00 -30.61 305.20 -8.32 -38.92 By element: Atomic # 1 Polarization: 9.67 SS G_CDS: -5.77 Total: 3.90 kcal Atomic # 6 Polarization: -17.57 SS G_CDS: -1.35 Total: -18.92 kcal Atomic # 7 Polarization: -37.92 SS G_CDS: -0.32 Total: -38.24 kcal Atomic # 8 Polarization: -6.56 SS G_CDS: -0.45 Total: -7.01 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -30.61 -8.32 -38.92 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379619251.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.848 kcal (2) G-P(sol) polarization free energy of solvation -30.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.53 seconds