Wall clock time and date at job start Mon Mar 30 2020 03:53:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47412 * 2 1 4 4 O 1.42902 * 109.46874 * 239.99512 * 2 1 3 5 5 C 1.53005 * 109.47049 * 120.00003 * 2 1 3 6 6 C 1.52997 * 109.46923 * 184.99521 * 5 2 1 7 7 C 1.53005 * 109.46923 * 180.02562 * 6 5 2 8 8 N 1.46900 * 109.47267 * 180.02562 * 7 6 5 9 9 C 1.46897 * 111.00130 * 169.99869 * 8 7 6 10 10 C 1.50694 * 109.47241 * 285.61877 * 9 8 7 11 11 H 1.07999 * 120.00043 * 4.85216 * 10 9 8 12 12 C 1.37879 * 120.00006 * 184.84612 * 10 9 8 13 13 N 1.31518 * 119.99989 * 0.02562 * 12 10 9 14 14 Si 1.86798 * 119.99735 * 179.97438 * 12 10 9 15 15 H 1.48498 * 109.47483 * 0.02562 * 14 12 10 16 16 H 1.48508 * 109.46862 * 120.00386 * 14 12 10 17 17 H 1.48500 * 109.47436 * 240.00036 * 14 12 10 18 18 C 1.46905 * 110.99430 * 293.95021 * 8 7 6 19 19 C 1.53003 * 117.50096 * 246.44198 * 18 8 7 20 20 C 1.53003 * 60.00040 * 252.51380 * 19 18 8 21 21 H 1.08998 * 109.47412 * 180.02562 * 1 2 3 22 22 H 1.09002 * 109.47162 * 300.00362 * 1 2 3 23 23 H 1.09001 * 109.47371 * 59.99846 * 1 2 3 24 24 H 0.96695 * 114.00313 * 300.00349 * 4 2 1 25 25 H 1.09000 * 109.47106 * 304.99758 * 5 2 1 26 26 H 1.08997 * 109.47003 * 64.99366 * 5 2 1 27 27 H 1.08991 * 109.47359 * 299.99844 * 6 5 2 28 28 H 1.08997 * 109.47179 * 60.00594 * 6 5 2 29 29 H 1.09000 * 109.47106 * 300.00237 * 7 6 5 30 30 H 1.08997 * 109.47003 * 59.99844 * 7 6 5 31 31 H 1.09004 * 109.46731 * 45.62314 * 9 8 7 32 32 H 1.09004 * 109.47261 * 165.61447 * 9 8 7 33 33 H 0.96998 * 119.99515 * 179.97438 * 13 12 10 34 34 H 1.09000 * 115.55213 * 32.15322 * 18 8 7 35 35 H 1.09001 * 117.49504 * 359.97438 * 19 18 8 36 36 H 1.08998 * 117.49854 * 145.02039 * 19 18 8 37 37 H 1.09001 * 117.49884 * 252.51141 * 20 19 18 38 38 H 1.08998 * 117.51905 * 107.47596 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0063 -0.6738 -1.1668 5 6 2.0400 -0.7213 1.2493 6 6 3.5648 -0.6134 1.3136 7 6 4.0748 -1.3352 2.5626 8 7 5.5388 -1.2312 2.6248 9 6 6.0455 -1.7016 3.9209 10 6 5.7496 -0.6711 4.9799 11 1 5.1684 0.2052 4.7333 12 6 6.2207 -0.8470 6.2637 13 7 6.9287 -1.9138 6.5639 14 14 5.8544 0.4308 7.5761 15 1 5.0460 1.5282 6.9868 16 1 5.0957 -0.2020 8.6849 17 1 7.1300 0.9816 8.1005 18 6 6.1661 -1.9641 1.5169 19 6 7.0009 -3.1972 1.8685 20 6 7.6914 -1.9114 1.4090 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 -0.3634 0.5139 -0.8900 24 1 1.7209 -1.5953 -1.2329 25 1 1.6054 -0.2617 2.1370 26 1 1.7515 -1.7715 1.2057 27 1 3.9993 -1.0729 0.4260 28 1 3.8532 0.4368 1.3573 29 1 3.6403 -0.8761 3.4505 30 1 3.7864 -2.3854 2.5185 31 1 5.5585 -2.6412 4.1820 32 1 7.1225 -1.8565 3.8555 33 1 7.2605 -2.0373 7.4670 34 1 5.5965 -1.9898 0.5879 35 1 7.0851 -3.4642 2.9219 36 1 6.9805 -4.0344 1.1709 37 1 8.1252 -1.9028 0.4090 38 1 8.2293 -1.3326 2.1598 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379619251.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:53:38 Heat of formation + Delta-G solvation = -59.627919 kcal Electronic energy + Delta-G solvation = -16079.225232 eV Core-core repulsion = 13535.070365 eV Total energy + Delta-G solvation = -2544.154867 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.89582 -38.72698 -35.66678 -34.93218 -33.21276 -31.21517 -28.85954 -26.37374 -24.52006 -23.15869 -22.94016 -22.12139 -20.36925 -18.74135 -17.35402 -17.04809 -16.84198 -16.61389 -16.01803 -15.41925 -14.97849 -14.53207 -14.37208 -13.99487 -13.64113 -13.50674 -13.10532 -12.79774 -12.69996 -12.56897 -12.37820 -12.27459 -12.23395 -11.88378 -11.80032 -11.55997 -11.39458 -11.13042 -11.04531 -10.75130 -10.58949 -8.82034 -8.21267 -6.31725 1.38669 1.39667 1.53277 2.38627 2.90737 3.10071 3.32234 3.58049 3.86522 4.01939 4.05013 4.15208 4.19627 4.22990 4.42146 4.55145 4.62315 4.69788 4.77910 4.79855 4.92146 4.95939 5.03935 5.07597 5.17277 5.22328 5.29574 5.31156 5.32057 5.45326 5.49662 5.64786 6.07069 6.41001 6.66013 6.84755 6.93256 7.37821 8.89302 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.021908 B = 0.006844 C = 0.005440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1277.791289 B = 4090.180579 C = 5145.456381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.105 3.895 3 H 0.089 0.911 4 O -0.580 6.580 5 C -0.143 4.143 6 C -0.097 4.097 7 C 0.068 3.932 8 N -0.518 5.518 9 C 0.209 3.791 10 C -0.523 4.523 11 H 0.059 0.941 12 C 0.002 3.998 13 N -0.934 5.934 14 Si 0.969 3.031 15 H -0.264 1.264 16 H -0.277 1.277 17 H -0.278 1.278 18 C 0.016 3.984 19 C -0.225 4.225 20 C -0.169 4.169 21 H 0.067 0.933 22 H 0.070 0.930 23 H 0.063 0.937 24 H 0.386 0.614 25 H 0.071 0.929 26 H 0.073 0.927 27 H 0.068 0.932 28 H 0.054 0.946 29 H 0.056 0.944 30 H 0.019 0.981 31 H -0.041 1.041 32 H 0.013 0.987 33 H 0.264 0.736 34 H 0.136 0.864 35 H 0.067 0.933 36 H 0.114 0.886 37 H 0.124 0.876 38 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.170 0.819 -12.769 16.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.046 3.954 3 H 0.107 0.893 4 O -0.387 6.387 5 C -0.182 4.182 6 C -0.135 4.135 7 C -0.060 4.060 8 N -0.240 5.240 9 C 0.083 3.917 10 C -0.562 4.562 11 H 0.077 0.923 12 C -0.196 4.196 13 N -0.575 5.575 14 Si 0.793 3.207 15 H -0.188 1.188 16 H -0.202 1.202 17 H -0.204 1.204 18 C -0.093 4.093 19 C -0.264 4.264 20 C -0.207 4.207 21 H 0.086 0.914 22 H 0.089 0.911 23 H 0.082 0.918 24 H 0.235 0.765 25 H 0.090 0.910 26 H 0.091 0.909 27 H 0.086 0.914 28 H 0.073 0.927 29 H 0.074 0.926 30 H 0.037 0.963 31 H -0.023 1.023 32 H 0.031 0.969 33 H 0.073 0.927 34 H 0.154 0.846 35 H 0.085 0.915 36 H 0.132 0.868 37 H 0.142 0.858 38 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -9.709 1.831 -12.768 16.144 hybrid contribution -0.157 -1.058 1.468 1.816 sum -9.866 0.774 -11.301 15.021 Atomic orbital electron populations 1.22443 0.95092 1.03193 1.02934 1.21881 0.93584 0.96222 0.83692 0.89286 1.86548 1.77785 1.30162 1.44232 1.22242 0.94970 1.01770 0.99180 1.21430 0.95501 1.00292 0.96242 1.21999 0.87268 0.97606 0.99100 1.61919 1.05867 1.53802 1.02427 1.19429 0.94183 0.92500 0.85596 1.21521 1.33295 1.06958 0.94399 0.92291 1.25906 0.94864 0.97863 1.00990 1.70094 1.37359 1.29235 1.20813 0.85343 0.78116 0.78867 0.78350 1.18794 1.20234 1.20379 1.22896 0.93225 0.96542 0.96652 1.23491 1.08094 0.93336 1.01518 1.23021 0.95118 0.99804 1.02737 0.91415 0.91112 0.91760 0.76493 0.90993 0.90873 0.91380 0.92684 0.92567 0.96283 1.02303 0.96857 0.92701 0.84626 0.91470 0.86800 0.85790 0.91413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.71 9.53 71.98 0.69 -2.02 16 2 C 0.10 2.07 3.59 30.60 0.11 2.18 16 3 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 4 O -0.58 -12.02 12.87 -148.98 -1.92 -13.94 16 5 C -0.14 -3.23 4.89 30.59 0.15 -3.08 16 6 C -0.10 -2.87 5.10 30.59 0.16 -2.72 16 7 C 0.07 2.63 4.79 86.30 0.41 3.04 16 8 N -0.52 -23.21 4.65 -875.50 -4.07 -27.28 16 9 C 0.21 11.44 3.38 85.56 0.29 11.72 16 10 C -0.52 -30.51 8.58 25.60 0.22 -30.30 16 11 H 0.06 3.40 7.57 -2.91 -0.02 3.38 16 12 C 0.00 0.09 5.46 84.65 0.46 0.55 16 13 N -0.93 -57.17 13.29 21.45 0.28 -56.88 16 14 Si 0.97 45.04 29.54 68.60 2.03 47.07 16 15 H -0.26 -11.81 7.11 99.48 0.71 -11.10 16 16 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 17 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 18 C 0.02 0.61 5.83 44.92 0.26 0.87 16 19 C -0.23 -8.30 9.56 30.60 0.29 -8.01 16 20 C -0.17 -6.01 9.91 30.60 0.30 -5.70 16 21 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 22 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 23 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 24 H 0.39 5.20 9.04 -74.06 -0.67 4.53 16 25 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 26 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 27 H 0.07 1.94 6.08 -2.39 -0.01 1.93 16 28 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 29 H 0.06 2.40 7.21 -2.39 -0.02 2.39 16 30 H 0.02 0.72 8.12 -2.39 -0.02 0.70 16 31 H -0.04 -2.42 7.82 -2.39 -0.02 -2.44 16 32 H 0.01 0.79 5.63 -2.38 -0.01 0.78 16 33 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 34 H 0.14 4.23 6.34 -2.39 -0.02 4.22 16 35 H 0.07 3.02 6.02 -2.39 -0.01 3.01 16 36 H 0.11 3.39 8.14 -2.39 -0.02 3.37 16 37 H 0.12 3.42 8.14 -2.39 -0.02 3.40 16 38 H 0.07 2.82 7.48 -2.39 -0.02 2.80 16 Total: -1.00 -67.35 305.20 0.02 -67.33 By element: Atomic # 1 Polarization: 16.82 SS G_CDS: 0.35 Total: 17.17 kcal Atomic # 6 Polarization: -36.81 SS G_CDS: 3.34 Total: -33.47 kcal Atomic # 7 Polarization: -80.38 SS G_CDS: -3.79 Total: -84.17 kcal Atomic # 8 Polarization: -12.02 SS G_CDS: -1.92 Total: -13.94 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 2.03 Total: 47.07 kcal Total: -67.35 0.02 -67.33 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379619251.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.704 kcal (2) G-P(sol) polarization free energy of solvation -67.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds