Wall clock time and date at job start Mon Mar 30 2020 04:16:21
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52994 * 1
3 3 H 1.09009 * 109.47154 * 2 1
4 4 C 1.52996 * 109.47347 * 119.99844 * 2 1 3
5 5 C 1.50702 * 109.47159 * 185.00014 * 4 2 1
6 6 H 1.08002 * 120.00299 * 0.02562 * 5 4 2
7 7 C 1.37884 * 119.99942 * 179.72211 * 5 4 2
8 8 N 1.31514 * 119.99985 * 180.27663 * 7 5 4
9 9 Si 1.86800 * 119.99777 * 0.28166 * 7 5 4
10 10 H 1.48498 * 109.47109 * 89.99834 * 9 7 5
11 11 H 1.48507 * 109.46754 * 209.99574 * 9 7 5
12 12 H 1.48498 * 109.47278 * 329.99405 * 9 7 5
13 13 N 1.46899 * 109.47404 * 240.00466 * 2 1 3
14 14 C 1.46896 * 111.00161 * 84.99487 * 13 2 1
15 15 C 1.53004 * 109.47104 * 180.02562 * 14 13 2
16 16 C 1.52998 * 109.47345 * 180.02562 * 15 14 13
17 17 H 1.09001 * 110.32961 * 307.25186 * 16 15 14
18 18 C 1.54470 * 110.37286 * 185.00339 * 16 15 14
19 19 C 1.54510 * 104.06157 * 217.18965 * 18 16 15
20 20 C 1.54478 * 104.06280 * 359.97438 * 19 18 16
21 21 O 1.44423 * 110.36978 * 69.62031 * 16 15 14
22 22 H 1.09001 * 109.47340 * 180.02562 * 1 2 3
23 23 H 1.09003 * 109.47483 * 299.99629 * 1 2 3
24 24 H 1.09001 * 109.47295 * 60.00152 * 1 2 3
25 25 H 1.09004 * 109.47066 * 65.00217 * 4 2 1
26 26 H 1.08994 * 109.47405 * 305.00047 * 4 2 1
27 27 H 0.96996 * 119.99730 * 180.02562 * 8 7 5
28 28 H 1.00903 * 110.99474 * 321.04169 * 13 2 1
29 29 H 1.09001 * 109.47591 * 299.99923 * 14 13 2
30 30 H 1.09001 * 109.47159 * 60.00789 * 14 13 2
31 31 H 1.09004 * 109.47110 * 300.00574 * 15 14 13
32 32 H 1.09008 * 109.46972 * 60.00137 * 15 14 13
33 33 H 1.09002 * 110.51586 * 335.83213 * 18 16 15
34 34 H 1.08996 * 110.51735 * 98.40573 * 18 16 15
35 35 H 1.09003 * 110.51348 * 118.64249 * 19 18 16
36 36 H 1.09005 * 110.51488 * 241.21505 * 19 18 16
37 37 H 1.09004 * 110.37074 * 142.81119 * 20 19 18
38 38 H 1.09004 * 110.37169 * 265.14704 * 20 19 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 6 2.0400 -0.7212 1.2492
5 6 3.5419 -0.6148 1.3126
6 1 4.0790 -0.0854 0.5395
7 6 4.2300 -1.1881 2.3611
8 7 5.5402 -1.0906 2.4193
9 14 3.3011 -2.1033 3.6986
10 1 3.1759 -3.5346 3.3235
11 1 4.0413 -1.9905 4.9811
12 1 1.9478 -1.5121 3.8545
13 7 2.0197 -0.6924 -1.1995
14 6 2.0824 0.2227 -2.3469
15 6 2.5950 -0.5330 -3.5745
16 6 2.6610 0.4202 -4.7694
17 1 1.7026 0.9206 -4.9080
18 6 3.0562 -0.3487 -6.0495
19 6 3.9684 0.6373 -6.8132
20 6 4.0158 1.8855 -5.9043
21 8 3.7145 1.3900 -4.5813
22 1 -0.3634 -1.0277 0.0005
23 1 -0.3634 0.5138 0.8900
24 1 -0.3634 0.5138 -0.8900
25 1 1.7517 -1.7715 1.2056
26 1 1.6054 -0.2617 2.1369
27 1 6.0242 -1.4942 3.1566
28 1 1.4496 -1.4979 -1.4100
29 1 1.0870 0.6164 -2.5526
30 1 2.7588 1.0463 -2.1182
31 1 3.5904 -0.9271 -3.3691
32 1 1.9183 -1.3565 -3.8030
33 1 3.6032 -1.2569 -5.7961
34 1 2.1717 -0.5889 -6.6394
35 1 4.9663 0.2166 -6.9372
36 1 3.5362 0.8848 -7.7827
37 1 5.0100 2.3320 -5.9245
38 1 3.2661 2.6120 -6.2180
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000379667677.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 04:16:21
Heat of formation + Delta-G solvation = -63.472195 kcal
Electronic energy + Delta-G solvation = -15916.932796 eV
Core-core repulsion = 13372.611229 eV
Total energy + Delta-G solvation = -2544.321568 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 227.163 amu
Computer time = 0.35 seconds
Orbital eigenvalues (eV)
-39.44931 -36.87391 -33.43857 -32.20857 -31.94460 -29.73430 -27.70989 -26.35199
-23.11033 -22.32855 -21.18930 -20.93887 -19.54636 -16.55975 -16.43150 -15.77239
-15.66044 -14.78891 -14.33467 -14.08329 -13.79987 -13.50733 -12.68182 -12.61766
-12.37558 -12.13970 -11.85223 -11.62120 -11.56139 -11.41662 -11.39182 -10.78286
-10.71963 -10.69962 -10.42479 -10.04040 -9.73817 -9.67402 -9.49481 -8.94373
-8.34169 -7.51437 -5.82253 -3.75601 3.42102 3.48800 3.51788 3.89919
4.46433 4.58114 4.61975 4.80479 4.89039 5.11005 5.21002 5.38552
5.46505 5.51408 5.53933 5.63333 5.66691 5.69725 5.78542 5.82783
5.88724 5.97044 6.00863 6.01701 6.35965 6.45606 6.52884 6.59675
6.88283 6.93352 7.25262 7.39949 7.90745 8.00661 8.20299 8.82152
9.30645 9.80810 11.32090
Molecular weight = 227.16amu
Principal moments of inertia in cm(-1)
A = 0.034352 B = 0.005341 C = 0.004895
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 814.894657 B = 5241.361928 C = 5718.968170
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.182 4.182
2 C 0.098 3.902
3 H 0.070 0.930
4 C -0.004 4.004
5 C -0.487 4.487
6 H 0.077 0.923
7 C 0.059 3.941
8 N -0.910 5.910
9 Si 0.875 3.125
10 H -0.280 1.280
11 H -0.291 1.291
12 H -0.269 1.269
13 N -0.664 5.664
14 C 0.065 3.935
15 C -0.111 4.111
16 C 0.077 3.923
17 H 0.064 0.936
18 C -0.151 4.151
19 C -0.156 4.156
20 C 0.043 3.957
21 O -0.363 6.363
22 H 0.050 0.950
23 H 0.056 0.944
24 H 0.040 0.960
25 H 0.011 0.989
26 H 0.015 0.985
27 H 0.258 0.742
28 H 0.327 0.673
29 H 0.014 0.986
30 H 0.076 0.924
31 H 0.084 0.916
32 H 0.070 0.930
33 H 0.078 0.922
34 H 0.073 0.927
35 H 0.074 0.926
36 H 0.072 0.928
37 H 0.089 0.911
38 H 0.055 0.945
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -8.339 2.748 -17.139 19.257
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.241 4.241
2 C -0.012 4.012
3 H 0.088 0.912
4 C -0.042 4.042
5 C -0.525 4.525
6 H 0.095 0.905
7 C -0.140 4.140
8 N -0.551 5.551
9 Si 0.703 3.297
10 H -0.206 1.206
11 H -0.217 1.217
12 H -0.194 1.194
13 N -0.293 5.293
14 C -0.065 4.065
15 C -0.149 4.149
16 C 0.018 3.982
17 H 0.082 0.918
18 C -0.189 4.189
19 C -0.193 4.193
20 C -0.035 4.035
21 O -0.282 6.282
22 H 0.069 0.931
23 H 0.075 0.925
24 H 0.059 0.941
25 H 0.029 0.971
26 H 0.034 0.966
27 H 0.068 0.932
28 H 0.144 0.856
29 H 0.032 0.968
30 H 0.094 0.906
31 H 0.102 0.898
32 H 0.088 0.912
33 H 0.097 0.903
34 H 0.092 0.908
35 H 0.093 0.907
36 H 0.091 0.909
37 H 0.108 0.892
38 H 0.074 0.926
Dipole moment (debyes) X Y Z Total
from point charges -7.417 2.847 -16.649 18.447
hybrid contribution -1.445 -0.516 0.283 1.560
sum -8.862 2.331 -16.366 18.757
Atomic orbital electron populations
1.22591 0.99583 1.01107 1.00841 1.21551 0.89596 0.98380 0.91648
0.91205 1.19611 0.97864 0.95047 0.91651 1.21069 0.89569 1.33656
1.08206 0.90506 1.25025 0.94681 0.96424 0.97870 1.69924 1.06463
1.46496 1.32219 0.86863 0.80332 0.80603 0.81863 1.20622 1.21749
1.19378 1.60455 1.57461 1.08639 1.02741 1.21904 0.98061 0.96202
0.90331 1.21636 1.03515 0.96853 0.92916 1.23017 0.90974 0.89393
0.94771 0.91807 1.22996 0.99898 0.99597 0.96426 1.22933 1.00889
0.96375 0.99138 1.23376 1.01234 0.95661 0.83183 1.89256 1.55142
1.57611 1.26206 0.93122 0.92527 0.94071 0.97110 0.96639 0.93175
0.85560 0.96828 0.90600 0.89768 0.91184 0.90312 0.90836 0.90698
0.90906 0.89232 0.92645
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.18 -2.98 9.16 37.15 0.34 -2.64 16
2 C 0.10 1.99 2.53 -67.72 -0.17 1.82 16
3 H 0.07 1.50 7.80 -51.92 -0.40 1.10 16
4 C 0.00 -0.10 3.72 -27.88 -0.10 -0.20 16
5 C -0.49 -14.38 9.39 -34.44 -0.32 -14.70 16
6 H 0.08 2.50 7.99 -52.49 -0.42 2.08 16
7 C 0.06 1.79 5.47 -17.82 -0.10 1.69 16
8 N -0.91 -29.27 13.96 55.43 0.77 -28.50 16
9 Si 0.88 22.54 27.47 -169.99 -4.67 17.87 16
10 H -0.28 -7.11 7.11 56.52 0.40 -6.71 16
11 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16
12 H -0.27 -6.63 6.54 56.52 0.37 -6.26 16
13 N -0.66 -12.76 5.96 -106.73 -0.64 -13.40 16
14 C 0.06 1.07 5.42 -3.82 -0.02 1.05 16
15 C -0.11 -1.57 5.10 -26.73 -0.14 -1.71 16
16 C 0.08 0.95 3.25 -25.96 -0.08 0.87 16
17 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16
18 C -0.15 -1.50 6.63 -25.17 -0.17 -1.66 16
19 C -0.16 -1.40 7.09 -25.16 -0.18 -1.58 16
20 C 0.04 0.45 7.63 37.93 0.29 0.74 16
21 O -0.36 -5.35 11.13 -35.23 -0.39 -5.74 16
22 H 0.05 0.78 8.13 -51.93 -0.42 0.36 16
23 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16
24 H 0.04 0.60 7.45 -51.93 -0.39 0.21 16
25 H 0.01 0.26 7.58 -51.93 -0.39 -0.13 16
26 H 0.02 0.38 7.19 -51.93 -0.37 0.01 16
27 H 0.26 7.81 8.31 -40.82 -0.34 7.47 16
28 H 0.33 5.64 8.47 -39.29 -0.33 5.31 16
29 H 0.01 0.21 7.44 -51.93 -0.39 -0.18 16
30 H 0.08 1.44 7.92 -51.93 -0.41 1.03 16
31 H 0.08 1.38 8.14 -51.93 -0.42 0.95 16
32 H 0.07 0.85 8.14 -51.92 -0.42 0.43 16
33 H 0.08 0.80 7.87 -51.93 -0.41 0.39 16
34 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16
35 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16
36 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16
37 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16
38 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16
LS Contribution 304.10 15.07 4.58 4.58
Total: -1.00 -32.81 304.10 -7.91 -40.71
By element:
Atomic # 1 Polarization: 7.71 SS G_CDS: -6.91 Total: 0.80 kcal
Atomic # 6 Polarization: -15.67 SS G_CDS: -0.65 Total: -16.32 kcal
Atomic # 7 Polarization: -42.03 SS G_CDS: 0.14 Total: -41.90 kcal
Atomic # 8 Polarization: -5.35 SS G_CDS: -0.39 Total: -5.74 kcal
Atomic # 14 Polarization: 22.54 SS G_CDS: -4.67 Total: 17.87 kcal
Total LS contribution 4.58 Total: 4.58 kcal
Total: -32.81 -7.91 -40.71 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000379667677.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -22.759 kcal
(2) G-P(sol) polarization free energy of solvation -32.807 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.566 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.906 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.713 kcal
(6) G-S(sol) free energy of system = (1) + (5) -63.472 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.35 seconds