Wall clock time and date at job start Mon Mar 30 2020 04:16:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09009 * 109.47154 * 2 1 4 4 C 1.52996 * 109.47347 * 119.99844 * 2 1 3 5 5 C 1.50702 * 109.47159 * 185.00014 * 4 2 1 6 6 H 1.08002 * 120.00299 * 0.02562 * 5 4 2 7 7 C 1.37884 * 119.99942 * 179.72211 * 5 4 2 8 8 N 1.31514 * 119.99985 * 180.27663 * 7 5 4 9 9 Si 1.86800 * 119.99777 * 0.28166 * 7 5 4 10 10 H 1.48498 * 109.47109 * 89.99834 * 9 7 5 11 11 H 1.48507 * 109.46754 * 209.99574 * 9 7 5 12 12 H 1.48498 * 109.47278 * 329.99405 * 9 7 5 13 13 N 1.46899 * 109.47404 * 240.00466 * 2 1 3 14 14 C 1.46896 * 111.00161 * 84.99487 * 13 2 1 15 15 C 1.53004 * 109.47104 * 180.02562 * 14 13 2 16 16 C 1.52998 * 109.47345 * 180.02562 * 15 14 13 17 17 H 1.09001 * 110.32961 * 307.25186 * 16 15 14 18 18 C 1.54470 * 110.37286 * 185.00339 * 16 15 14 19 19 C 1.54510 * 104.06157 * 217.18965 * 18 16 15 20 20 C 1.54478 * 104.06280 * 359.97438 * 19 18 16 21 21 O 1.44423 * 110.36978 * 69.62031 * 16 15 14 22 22 H 1.09001 * 109.47340 * 180.02562 * 1 2 3 23 23 H 1.09003 * 109.47483 * 299.99629 * 1 2 3 24 24 H 1.09001 * 109.47295 * 60.00152 * 1 2 3 25 25 H 1.09004 * 109.47066 * 65.00217 * 4 2 1 26 26 H 1.08994 * 109.47405 * 305.00047 * 4 2 1 27 27 H 0.96996 * 119.99730 * 180.02562 * 8 7 5 28 28 H 1.00903 * 110.99474 * 321.04169 * 13 2 1 29 29 H 1.09001 * 109.47591 * 299.99923 * 14 13 2 30 30 H 1.09001 * 109.47159 * 60.00789 * 14 13 2 31 31 H 1.09004 * 109.47110 * 300.00574 * 15 14 13 32 32 H 1.09008 * 109.46972 * 60.00137 * 15 14 13 33 33 H 1.09002 * 110.51586 * 335.83213 * 18 16 15 34 34 H 1.08996 * 110.51735 * 98.40573 * 18 16 15 35 35 H 1.09003 * 110.51348 * 118.64249 * 19 18 16 36 36 H 1.09005 * 110.51488 * 241.21505 * 19 18 16 37 37 H 1.09004 * 110.37074 * 142.81119 * 20 19 18 38 38 H 1.09004 * 110.37169 * 265.14704 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5419 -0.6148 1.3126 6 1 4.0790 -0.0854 0.5395 7 6 4.2300 -1.1881 2.3611 8 7 5.5402 -1.0906 2.4193 9 14 3.3011 -2.1033 3.6986 10 1 3.1759 -3.5346 3.3235 11 1 4.0413 -1.9905 4.9811 12 1 1.9478 -1.5121 3.8545 13 7 2.0197 -0.6924 -1.1995 14 6 2.0824 0.2227 -2.3469 15 6 2.5950 -0.5330 -3.5745 16 6 2.6610 0.4202 -4.7694 17 1 1.7026 0.9206 -4.9080 18 6 3.0562 -0.3487 -6.0495 19 6 3.9684 0.6373 -6.8132 20 6 4.0158 1.8855 -5.9043 21 8 3.7145 1.3900 -4.5813 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 1.7517 -1.7715 1.2056 26 1 1.6054 -0.2617 2.1369 27 1 6.0242 -1.4942 3.1566 28 1 1.4496 -1.4979 -1.4100 29 1 1.0870 0.6164 -2.5526 30 1 2.7588 1.0463 -2.1182 31 1 3.5904 -0.9271 -3.3691 32 1 1.9183 -1.3565 -3.8030 33 1 3.6032 -1.2569 -5.7961 34 1 2.1717 -0.5889 -6.6394 35 1 4.9663 0.2166 -6.9372 36 1 3.5362 0.8848 -7.7827 37 1 5.0100 2.3320 -5.9245 38 1 3.2661 2.6120 -6.2180 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379667677.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:16:21 Heat of formation + Delta-G solvation = -63.472195 kcal Electronic energy + Delta-G solvation = -15916.932796 eV Core-core repulsion = 13372.611229 eV Total energy + Delta-G solvation = -2544.321568 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.44931 -36.87391 -33.43857 -32.20857 -31.94460 -29.73430 -27.70989 -26.35199 -23.11033 -22.32855 -21.18930 -20.93887 -19.54636 -16.55975 -16.43150 -15.77239 -15.66044 -14.78891 -14.33467 -14.08329 -13.79987 -13.50733 -12.68182 -12.61766 -12.37558 -12.13970 -11.85223 -11.62120 -11.56139 -11.41662 -11.39182 -10.78286 -10.71963 -10.69962 -10.42479 -10.04040 -9.73817 -9.67402 -9.49481 -8.94373 -8.34169 -7.51437 -5.82253 -3.75601 3.42102 3.48800 3.51788 3.89919 4.46433 4.58114 4.61975 4.80479 4.89039 5.11005 5.21002 5.38552 5.46505 5.51408 5.53933 5.63333 5.66691 5.69725 5.78542 5.82783 5.88724 5.97044 6.00863 6.01701 6.35965 6.45606 6.52884 6.59675 6.88283 6.93352 7.25262 7.39949 7.90745 8.00661 8.20299 8.82152 9.30645 9.80810 11.32090 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.034352 B = 0.005341 C = 0.004895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 814.894657 B = 5241.361928 C = 5718.968170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.098 3.902 3 H 0.070 0.930 4 C -0.004 4.004 5 C -0.487 4.487 6 H 0.077 0.923 7 C 0.059 3.941 8 N -0.910 5.910 9 Si 0.875 3.125 10 H -0.280 1.280 11 H -0.291 1.291 12 H -0.269 1.269 13 N -0.664 5.664 14 C 0.065 3.935 15 C -0.111 4.111 16 C 0.077 3.923 17 H 0.064 0.936 18 C -0.151 4.151 19 C -0.156 4.156 20 C 0.043 3.957 21 O -0.363 6.363 22 H 0.050 0.950 23 H 0.056 0.944 24 H 0.040 0.960 25 H 0.011 0.989 26 H 0.015 0.985 27 H 0.258 0.742 28 H 0.327 0.673 29 H 0.014 0.986 30 H 0.076 0.924 31 H 0.084 0.916 32 H 0.070 0.930 33 H 0.078 0.922 34 H 0.073 0.927 35 H 0.074 0.926 36 H 0.072 0.928 37 H 0.089 0.911 38 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.339 2.748 -17.139 19.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.012 4.012 3 H 0.088 0.912 4 C -0.042 4.042 5 C -0.525 4.525 6 H 0.095 0.905 7 C -0.140 4.140 8 N -0.551 5.551 9 Si 0.703 3.297 10 H -0.206 1.206 11 H -0.217 1.217 12 H -0.194 1.194 13 N -0.293 5.293 14 C -0.065 4.065 15 C -0.149 4.149 16 C 0.018 3.982 17 H 0.082 0.918 18 C -0.189 4.189 19 C -0.193 4.193 20 C -0.035 4.035 21 O -0.282 6.282 22 H 0.069 0.931 23 H 0.075 0.925 24 H 0.059 0.941 25 H 0.029 0.971 26 H 0.034 0.966 27 H 0.068 0.932 28 H 0.144 0.856 29 H 0.032 0.968 30 H 0.094 0.906 31 H 0.102 0.898 32 H 0.088 0.912 33 H 0.097 0.903 34 H 0.092 0.908 35 H 0.093 0.907 36 H 0.091 0.909 37 H 0.108 0.892 38 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -7.417 2.847 -16.649 18.447 hybrid contribution -1.445 -0.516 0.283 1.560 sum -8.862 2.331 -16.366 18.757 Atomic orbital electron populations 1.22591 0.99583 1.01107 1.00841 1.21551 0.89596 0.98380 0.91648 0.91205 1.19611 0.97864 0.95047 0.91651 1.21069 0.89569 1.33656 1.08206 0.90506 1.25025 0.94681 0.96424 0.97870 1.69924 1.06463 1.46496 1.32219 0.86863 0.80332 0.80603 0.81863 1.20622 1.21749 1.19378 1.60455 1.57461 1.08639 1.02741 1.21904 0.98061 0.96202 0.90331 1.21636 1.03515 0.96853 0.92916 1.23017 0.90974 0.89393 0.94771 0.91807 1.22996 0.99898 0.99597 0.96426 1.22933 1.00889 0.96375 0.99138 1.23376 1.01234 0.95661 0.83183 1.89256 1.55142 1.57611 1.26206 0.93122 0.92527 0.94071 0.97110 0.96639 0.93175 0.85560 0.96828 0.90600 0.89768 0.91184 0.90312 0.90836 0.90698 0.90906 0.89232 0.92645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.98 9.16 37.15 0.34 -2.64 16 2 C 0.10 1.99 2.53 -67.72 -0.17 1.82 16 3 H 0.07 1.50 7.80 -51.92 -0.40 1.10 16 4 C 0.00 -0.10 3.72 -27.88 -0.10 -0.20 16 5 C -0.49 -14.38 9.39 -34.44 -0.32 -14.70 16 6 H 0.08 2.50 7.99 -52.49 -0.42 2.08 16 7 C 0.06 1.79 5.47 -17.82 -0.10 1.69 16 8 N -0.91 -29.27 13.96 55.43 0.77 -28.50 16 9 Si 0.88 22.54 27.47 -169.99 -4.67 17.87 16 10 H -0.28 -7.11 7.11 56.52 0.40 -6.71 16 11 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 12 H -0.27 -6.63 6.54 56.52 0.37 -6.26 16 13 N -0.66 -12.76 5.96 -106.73 -0.64 -13.40 16 14 C 0.06 1.07 5.42 -3.82 -0.02 1.05 16 15 C -0.11 -1.57 5.10 -26.73 -0.14 -1.71 16 16 C 0.08 0.95 3.25 -25.96 -0.08 0.87 16 17 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 18 C -0.15 -1.50 6.63 -25.17 -0.17 -1.66 16 19 C -0.16 -1.40 7.09 -25.16 -0.18 -1.58 16 20 C 0.04 0.45 7.63 37.93 0.29 0.74 16 21 O -0.36 -5.35 11.13 -35.23 -0.39 -5.74 16 22 H 0.05 0.78 8.13 -51.93 -0.42 0.36 16 23 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 24 H 0.04 0.60 7.45 -51.93 -0.39 0.21 16 25 H 0.01 0.26 7.58 -51.93 -0.39 -0.13 16 26 H 0.02 0.38 7.19 -51.93 -0.37 0.01 16 27 H 0.26 7.81 8.31 -40.82 -0.34 7.47 16 28 H 0.33 5.64 8.47 -39.29 -0.33 5.31 16 29 H 0.01 0.21 7.44 -51.93 -0.39 -0.18 16 30 H 0.08 1.44 7.92 -51.93 -0.41 1.03 16 31 H 0.08 1.38 8.14 -51.93 -0.42 0.95 16 32 H 0.07 0.85 8.14 -51.92 -0.42 0.43 16 33 H 0.08 0.80 7.87 -51.93 -0.41 0.39 16 34 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 36 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 37 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 LS Contribution 304.10 15.07 4.58 4.58 Total: -1.00 -32.81 304.10 -7.91 -40.71 By element: Atomic # 1 Polarization: 7.71 SS G_CDS: -6.91 Total: 0.80 kcal Atomic # 6 Polarization: -15.67 SS G_CDS: -0.65 Total: -16.32 kcal Atomic # 7 Polarization: -42.03 SS G_CDS: 0.14 Total: -41.90 kcal Atomic # 8 Polarization: -5.35 SS G_CDS: -0.39 Total: -5.74 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -4.67 Total: 17.87 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -32.81 -7.91 -40.71 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379667677.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.759 kcal (2) G-P(sol) polarization free energy of solvation -32.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds