Wall clock time and date at job start Mon Mar 30 2020 04:16:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09009 * 109.47154 * 2 1 4 4 C 1.52996 * 109.47347 * 119.99844 * 2 1 3 5 5 C 1.50702 * 109.47159 * 185.00014 * 4 2 1 6 6 H 1.08002 * 120.00299 * 0.02562 * 5 4 2 7 7 C 1.37884 * 119.99942 * 179.72211 * 5 4 2 8 8 N 1.31514 * 119.99985 * 180.27663 * 7 5 4 9 9 Si 1.86800 * 119.99777 * 0.28166 * 7 5 4 10 10 H 1.48498 * 109.47109 * 89.99834 * 9 7 5 11 11 H 1.48507 * 109.46754 * 209.99574 * 9 7 5 12 12 H 1.48498 * 109.47278 * 329.99405 * 9 7 5 13 13 N 1.46899 * 109.47404 * 240.00466 * 2 1 3 14 14 C 1.46896 * 111.00161 * 84.99487 * 13 2 1 15 15 C 1.53004 * 109.47104 * 180.02562 * 14 13 2 16 16 C 1.52998 * 109.47345 * 180.02562 * 15 14 13 17 17 H 1.09001 * 110.32961 * 307.25186 * 16 15 14 18 18 C 1.54470 * 110.37286 * 185.00339 * 16 15 14 19 19 C 1.54510 * 104.06157 * 217.18965 * 18 16 15 20 20 C 1.54478 * 104.06280 * 359.97438 * 19 18 16 21 21 O 1.44423 * 110.36978 * 69.62031 * 16 15 14 22 22 H 1.09001 * 109.47340 * 180.02562 * 1 2 3 23 23 H 1.09003 * 109.47483 * 299.99629 * 1 2 3 24 24 H 1.09001 * 109.47295 * 60.00152 * 1 2 3 25 25 H 1.09004 * 109.47066 * 65.00217 * 4 2 1 26 26 H 1.08994 * 109.47405 * 305.00047 * 4 2 1 27 27 H 0.96996 * 119.99730 * 180.02562 * 8 7 5 28 28 H 1.00903 * 110.99474 * 321.04169 * 13 2 1 29 29 H 1.09001 * 109.47591 * 299.99923 * 14 13 2 30 30 H 1.09001 * 109.47159 * 60.00789 * 14 13 2 31 31 H 1.09004 * 109.47110 * 300.00574 * 15 14 13 32 32 H 1.09008 * 109.46972 * 60.00137 * 15 14 13 33 33 H 1.09002 * 110.51586 * 335.83213 * 18 16 15 34 34 H 1.08996 * 110.51735 * 98.40573 * 18 16 15 35 35 H 1.09003 * 110.51348 * 118.64249 * 19 18 16 36 36 H 1.09005 * 110.51488 * 241.21505 * 19 18 16 37 37 H 1.09004 * 110.37074 * 142.81119 * 20 19 18 38 38 H 1.09004 * 110.37169 * 265.14704 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5419 -0.6148 1.3126 6 1 4.0790 -0.0854 0.5395 7 6 4.2300 -1.1881 2.3611 8 7 5.5402 -1.0906 2.4193 9 14 3.3011 -2.1033 3.6986 10 1 3.1759 -3.5346 3.3235 11 1 4.0413 -1.9905 4.9811 12 1 1.9478 -1.5121 3.8545 13 7 2.0197 -0.6924 -1.1995 14 6 2.0824 0.2227 -2.3469 15 6 2.5950 -0.5330 -3.5745 16 6 2.6610 0.4202 -4.7694 17 1 1.7026 0.9206 -4.9080 18 6 3.0562 -0.3487 -6.0495 19 6 3.9684 0.6373 -6.8132 20 6 4.0158 1.8855 -5.9043 21 8 3.7145 1.3900 -4.5813 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 1.7517 -1.7715 1.2056 26 1 1.6054 -0.2617 2.1369 27 1 6.0242 -1.4942 3.1566 28 1 1.4496 -1.4979 -1.4100 29 1 1.0870 0.6164 -2.5526 30 1 2.7588 1.0463 -2.1182 31 1 3.5904 -0.9271 -3.3691 32 1 1.9183 -1.3565 -3.8030 33 1 3.6032 -1.2569 -5.7961 34 1 2.1717 -0.5889 -6.6394 35 1 4.9663 0.2166 -6.9372 36 1 3.5362 0.8848 -7.7827 37 1 5.0100 2.3320 -5.9245 38 1 3.2661 2.6120 -6.2180 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379667677.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:16:21 Heat of formation + Delta-G solvation = -86.893641 kcal Electronic energy + Delta-G solvation = -15917.948426 eV Core-core repulsion = 13372.611229 eV Total energy + Delta-G solvation = -2545.337198 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.38792 -38.40681 -35.12531 -33.96786 -32.94546 -31.17318 -29.47171 -27.45396 -24.76678 -23.71309 -22.27327 -21.93769 -21.21043 -18.76787 -17.46975 -16.79683 -16.62194 -16.47254 -15.90523 -15.62575 -15.14297 -14.59984 -14.47060 -13.95745 -13.83795 -13.58170 -13.34141 -13.07290 -12.69660 -12.55435 -12.51272 -12.35755 -12.05574 -11.80785 -11.71473 -11.62211 -11.47006 -11.33608 -11.07347 -10.68937 -10.66712 -8.98666 -8.16281 -6.15875 1.38447 1.40993 1.52283 2.43943 3.02657 3.15533 3.33325 3.75489 3.90638 4.05824 4.13181 4.14981 4.25292 4.37025 4.42433 4.46412 4.59052 4.62516 4.72133 4.83750 4.87665 4.94922 4.97049 5.08518 5.13697 5.16214 5.18064 5.23870 5.31045 5.34346 5.53869 5.77453 6.01962 6.35072 6.52163 6.80257 6.92865 7.44578 9.01901 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.034352 B = 0.005341 C = 0.004895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 814.894657 B = 5241.361928 C = 5718.968170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.100 3.900 3 H 0.046 0.954 4 C -0.002 4.002 5 C -0.493 4.493 6 H 0.025 0.975 7 C -0.009 4.009 8 N -0.963 5.963 9 Si 0.953 3.047 10 H -0.270 1.270 11 H -0.289 1.289 12 H -0.245 1.245 13 N -0.689 5.689 14 C 0.072 3.928 15 C -0.105 4.105 16 C 0.073 3.927 17 H 0.079 0.921 18 C -0.148 4.148 19 C -0.151 4.151 20 C 0.033 3.967 21 O -0.407 6.407 22 H 0.064 0.936 23 H 0.062 0.938 24 H 0.062 0.938 25 H 0.018 0.982 26 H 0.021 0.979 27 H 0.261 0.739 28 H 0.341 0.659 29 H 0.038 0.962 30 H 0.038 0.962 31 H 0.051 0.949 32 H 0.096 0.904 33 H 0.070 0.930 34 H 0.099 0.901 35 H 0.072 0.928 36 H 0.099 0.901 37 H 0.091 0.909 38 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.211 1.907 -17.959 21.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.010 4.010 3 H 0.064 0.936 4 C -0.040 4.040 5 C -0.531 4.531 6 H 0.044 0.956 7 C -0.203 4.203 8 N -0.605 5.605 9 Si 0.777 3.223 10 H -0.195 1.195 11 H -0.215 1.215 12 H -0.169 1.169 13 N -0.320 5.320 14 C -0.057 4.057 15 C -0.143 4.143 16 C 0.016 3.984 17 H 0.097 0.903 18 C -0.186 4.186 19 C -0.188 4.188 20 C -0.043 4.043 21 O -0.327 6.327 22 H 0.083 0.917 23 H 0.081 0.919 24 H 0.081 0.919 25 H 0.037 0.963 26 H 0.039 0.961 27 H 0.069 0.931 28 H 0.159 0.841 29 H 0.056 0.944 30 H 0.057 0.943 31 H 0.070 0.930 32 H 0.114 0.886 33 H 0.089 0.911 34 H 0.118 0.882 35 H 0.091 0.909 36 H 0.117 0.883 37 H 0.109 0.891 38 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -10.313 2.013 -17.496 20.409 hybrid contribution -0.458 -0.180 0.471 0.681 sum -10.771 1.832 -17.025 20.229 Atomic orbital electron populations 1.22412 0.95574 1.02491 1.02272 1.21345 0.92677 0.96444 0.90548 0.93559 1.19575 0.94236 0.96021 0.94124 1.21325 0.92392 1.32630 1.06767 0.95641 1.26055 0.95596 0.97665 1.00967 1.70111 1.08701 1.48184 1.33530 0.85621 0.79603 0.79247 0.77816 1.19504 1.21489 1.16885 1.60296 1.58514 1.09833 1.03397 1.21803 0.98483 0.95086 0.90308 1.21589 1.02051 0.97816 0.92799 1.23124 0.91257 0.89159 0.94906 0.90285 1.22994 1.01046 0.99038 0.95480 1.22935 1.00939 0.95164 0.99784 1.23614 1.01922 0.96800 0.81989 1.89222 1.56079 1.58511 1.28866 0.91695 0.91857 0.91939 0.96331 0.96095 0.93050 0.84061 0.94350 0.94309 0.93019 0.88578 0.91095 0.88243 0.90873 0.88272 0.89055 0.91081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.00 9.16 71.98 0.66 -4.34 16 2 C 0.10 4.02 2.53 44.91 0.11 4.13 16 3 H 0.05 2.04 7.80 -2.38 -0.02 2.03 16 4 C 0.00 -0.09 3.72 29.85 0.11 0.02 16 5 C -0.49 -30.03 9.39 25.60 0.24 -29.79 16 6 H 0.03 1.76 7.99 -2.91 -0.02 1.73 16 7 C -0.01 -0.53 5.47 84.66 0.46 -0.07 16 8 N -0.96 -64.02 13.96 21.45 0.30 -63.72 16 9 Si 0.95 46.41 27.47 68.60 1.88 48.30 16 10 H -0.27 -12.63 7.11 99.48 0.71 -11.93 16 11 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 12 H -0.25 -10.93 6.54 99.48 0.65 -10.28 16 13 N -0.69 -26.50 5.96 -491.58 -2.93 -29.44 16 14 C 0.07 2.41 5.42 86.31 0.47 2.88 16 15 C -0.10 -2.94 5.10 30.60 0.16 -2.78 16 16 C 0.07 1.75 3.25 31.09 0.10 1.85 16 17 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 18 C -0.15 -2.64 6.63 31.61 0.21 -2.43 16 19 C -0.15 -2.42 7.09 31.61 0.22 -2.20 16 20 C 0.03 0.68 7.63 72.48 0.55 1.23 16 21 O -0.41 -12.21 11.13 -148.98 -1.66 -13.87 16 22 H 0.06 1.76 8.13 -2.39 -0.02 1.74 16 23 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 24 H 0.06 1.60 7.45 -2.39 -0.02 1.58 16 25 H 0.02 0.87 7.58 -2.38 -0.02 0.85 16 26 H 0.02 0.99 7.19 -2.39 -0.02 0.97 16 27 H 0.26 16.20 8.31 -92.71 -0.77 15.42 16 28 H 0.34 11.25 8.47 -89.69 -0.76 10.49 16 29 H 0.04 1.09 7.44 -2.39 -0.02 1.07 16 30 H 0.04 1.56 7.92 -2.39 -0.02 1.54 16 31 H 0.05 1.77 8.14 -2.38 -0.02 1.75 16 32 H 0.10 2.16 8.14 -2.38 -0.02 2.14 16 33 H 0.07 1.37 7.87 -2.39 -0.02 1.35 16 34 H 0.10 1.26 8.14 -2.39 -0.02 1.25 16 35 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 36 H 0.10 1.08 8.14 -2.38 -0.02 1.06 16 37 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 38 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 Total: -1.00 -74.23 304.10 1.08 -73.15 By element: Atomic # 1 Polarization: 16.89 SS G_CDS: 0.19 Total: 17.08 kcal Atomic # 6 Polarization: -34.80 SS G_CDS: 3.30 Total: -31.50 kcal Atomic # 7 Polarization: -90.52 SS G_CDS: -2.63 Total: -93.16 kcal Atomic # 8 Polarization: -12.21 SS G_CDS: -1.66 Total: -13.87 kcal Atomic # 14 Polarization: 46.41 SS G_CDS: 1.88 Total: 48.30 kcal Total: -74.23 1.08 -73.15 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379667677.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.744 kcal (2) G-P(sol) polarization free energy of solvation -74.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds