Wall clock time and date at job start Mon Mar 30 2020 04:16:21
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52994 * 1
3 3 H 1.09009 * 109.47154 * 2 1
4 4 C 1.52996 * 109.47347 * 119.99844 * 2 1 3
5 5 C 1.50702 * 109.47159 * 185.00014 * 4 2 1
6 6 H 1.08002 * 120.00299 * 0.02562 * 5 4 2
7 7 C 1.37884 * 119.99942 * 179.72211 * 5 4 2
8 8 N 1.31514 * 119.99985 * 180.27663 * 7 5 4
9 9 Si 1.86800 * 119.99777 * 0.28166 * 7 5 4
10 10 H 1.48498 * 109.47109 * 89.99834 * 9 7 5
11 11 H 1.48507 * 109.46754 * 209.99574 * 9 7 5
12 12 H 1.48498 * 109.47278 * 329.99405 * 9 7 5
13 13 N 1.46899 * 109.47404 * 240.00466 * 2 1 3
14 14 C 1.46896 * 111.00161 * 84.99487 * 13 2 1
15 15 C 1.53004 * 109.47104 * 180.02562 * 14 13 2
16 16 C 1.52998 * 109.47345 * 180.02562 * 15 14 13
17 17 H 1.09001 * 110.32961 * 307.25186 * 16 15 14
18 18 C 1.54470 * 110.37286 * 185.00339 * 16 15 14
19 19 C 1.54510 * 104.06157 * 217.18965 * 18 16 15
20 20 C 1.54478 * 104.06280 * 359.97438 * 19 18 16
21 21 O 1.44423 * 110.36978 * 69.62031 * 16 15 14
22 22 H 1.09001 * 109.47340 * 180.02562 * 1 2 3
23 23 H 1.09003 * 109.47483 * 299.99629 * 1 2 3
24 24 H 1.09001 * 109.47295 * 60.00152 * 1 2 3
25 25 H 1.09004 * 109.47066 * 65.00217 * 4 2 1
26 26 H 1.08994 * 109.47405 * 305.00047 * 4 2 1
27 27 H 0.96996 * 119.99730 * 180.02562 * 8 7 5
28 28 H 1.00903 * 110.99474 * 321.04169 * 13 2 1
29 29 H 1.09001 * 109.47591 * 299.99923 * 14 13 2
30 30 H 1.09001 * 109.47159 * 60.00789 * 14 13 2
31 31 H 1.09004 * 109.47110 * 300.00574 * 15 14 13
32 32 H 1.09008 * 109.46972 * 60.00137 * 15 14 13
33 33 H 1.09002 * 110.51586 * 335.83213 * 18 16 15
34 34 H 1.08996 * 110.51735 * 98.40573 * 18 16 15
35 35 H 1.09003 * 110.51348 * 118.64249 * 19 18 16
36 36 H 1.09005 * 110.51488 * 241.21505 * 19 18 16
37 37 H 1.09004 * 110.37074 * 142.81119 * 20 19 18
38 38 H 1.09004 * 110.37169 * 265.14704 * 20 19 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 6 2.0400 -0.7212 1.2492
5 6 3.5419 -0.6148 1.3126
6 1 4.0790 -0.0854 0.5395
7 6 4.2300 -1.1881 2.3611
8 7 5.5402 -1.0906 2.4193
9 14 3.3011 -2.1033 3.6986
10 1 3.1759 -3.5346 3.3235
11 1 4.0413 -1.9905 4.9811
12 1 1.9478 -1.5121 3.8545
13 7 2.0197 -0.6924 -1.1995
14 6 2.0824 0.2227 -2.3469
15 6 2.5950 -0.5330 -3.5745
16 6 2.6610 0.4202 -4.7694
17 1 1.7026 0.9206 -4.9080
18 6 3.0562 -0.3487 -6.0495
19 6 3.9684 0.6373 -6.8132
20 6 4.0158 1.8855 -5.9043
21 8 3.7145 1.3900 -4.5813
22 1 -0.3634 -1.0277 0.0005
23 1 -0.3634 0.5138 0.8900
24 1 -0.3634 0.5138 -0.8900
25 1 1.7517 -1.7715 1.2056
26 1 1.6054 -0.2617 2.1369
27 1 6.0242 -1.4942 3.1566
28 1 1.4496 -1.4979 -1.4100
29 1 1.0870 0.6164 -2.5526
30 1 2.7588 1.0463 -2.1182
31 1 3.5904 -0.9271 -3.3691
32 1 1.9183 -1.3565 -3.8030
33 1 3.6032 -1.2569 -5.7961
34 1 2.1717 -0.5889 -6.6394
35 1 4.9663 0.2166 -6.9372
36 1 3.5362 0.8848 -7.7827
37 1 5.0100 2.3320 -5.9245
38 1 3.2661 2.6120 -6.2180
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000379667677.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 04:16:21
Heat of formation + Delta-G solvation = -86.893641 kcal
Electronic energy + Delta-G solvation = -15917.948426 eV
Core-core repulsion = 13372.611229 eV
Total energy + Delta-G solvation = -2545.337198 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 227.163 amu
Computer time = 0.38 seconds
Orbital eigenvalues (eV)
-40.38792 -38.40681 -35.12531 -33.96786 -32.94546 -31.17318 -29.47171 -27.45396
-24.76678 -23.71309 -22.27327 -21.93769 -21.21043 -18.76787 -17.46975 -16.79683
-16.62194 -16.47254 -15.90523 -15.62575 -15.14297 -14.59984 -14.47060 -13.95745
-13.83795 -13.58170 -13.34141 -13.07290 -12.69660 -12.55435 -12.51272 -12.35755
-12.05574 -11.80785 -11.71473 -11.62211 -11.47006 -11.33608 -11.07347 -10.68937
-10.66712 -8.98666 -8.16281 -6.15875 1.38447 1.40993 1.52283 2.43943
3.02657 3.15533 3.33325 3.75489 3.90638 4.05824 4.13181 4.14981
4.25292 4.37025 4.42433 4.46412 4.59052 4.62516 4.72133 4.83750
4.87665 4.94922 4.97049 5.08518 5.13697 5.16214 5.18064 5.23870
5.31045 5.34346 5.53869 5.77453 6.01962 6.35072 6.52163 6.80257
6.92865 7.44578 9.01901
Molecular weight = 227.16amu
Principal moments of inertia in cm(-1)
A = 0.034352 B = 0.005341 C = 0.004895
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 814.894657 B = 5241.361928 C = 5718.968170
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.169 4.169
2 C 0.100 3.900
3 H 0.046 0.954
4 C -0.002 4.002
5 C -0.493 4.493
6 H 0.025 0.975
7 C -0.009 4.009
8 N -0.963 5.963
9 Si 0.953 3.047
10 H -0.270 1.270
11 H -0.289 1.289
12 H -0.245 1.245
13 N -0.689 5.689
14 C 0.072 3.928
15 C -0.105 4.105
16 C 0.073 3.927
17 H 0.079 0.921
18 C -0.148 4.148
19 C -0.151 4.151
20 C 0.033 3.967
21 O -0.407 6.407
22 H 0.064 0.936
23 H 0.062 0.938
24 H 0.062 0.938
25 H 0.018 0.982
26 H 0.021 0.979
27 H 0.261 0.739
28 H 0.341 0.659
29 H 0.038 0.962
30 H 0.038 0.962
31 H 0.051 0.949
32 H 0.096 0.904
33 H 0.070 0.930
34 H 0.099 0.901
35 H 0.072 0.928
36 H 0.099 0.901
37 H 0.091 0.909
38 H 0.071 0.929
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -11.211 1.907 -17.959 21.257
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.227 4.227
2 C -0.010 4.010
3 H 0.064 0.936
4 C -0.040 4.040
5 C -0.531 4.531
6 H 0.044 0.956
7 C -0.203 4.203
8 N -0.605 5.605
9 Si 0.777 3.223
10 H -0.195 1.195
11 H -0.215 1.215
12 H -0.169 1.169
13 N -0.320 5.320
14 C -0.057 4.057
15 C -0.143 4.143
16 C 0.016 3.984
17 H 0.097 0.903
18 C -0.186 4.186
19 C -0.188 4.188
20 C -0.043 4.043
21 O -0.327 6.327
22 H 0.083 0.917
23 H 0.081 0.919
24 H 0.081 0.919
25 H 0.037 0.963
26 H 0.039 0.961
27 H 0.069 0.931
28 H 0.159 0.841
29 H 0.056 0.944
30 H 0.057 0.943
31 H 0.070 0.930
32 H 0.114 0.886
33 H 0.089 0.911
34 H 0.118 0.882
35 H 0.091 0.909
36 H 0.117 0.883
37 H 0.109 0.891
38 H 0.089 0.911
Dipole moment (debyes) X Y Z Total
from point charges -10.313 2.013 -17.496 20.409
hybrid contribution -0.458 -0.180 0.471 0.681
sum -10.771 1.832 -17.025 20.229
Atomic orbital electron populations
1.22412 0.95574 1.02491 1.02272 1.21345 0.92677 0.96444 0.90548
0.93559 1.19575 0.94236 0.96021 0.94124 1.21325 0.92392 1.32630
1.06767 0.95641 1.26055 0.95596 0.97665 1.00967 1.70111 1.08701
1.48184 1.33530 0.85621 0.79603 0.79247 0.77816 1.19504 1.21489
1.16885 1.60296 1.58514 1.09833 1.03397 1.21803 0.98483 0.95086
0.90308 1.21589 1.02051 0.97816 0.92799 1.23124 0.91257 0.89159
0.94906 0.90285 1.22994 1.01046 0.99038 0.95480 1.22935 1.00939
0.95164 0.99784 1.23614 1.01922 0.96800 0.81989 1.89222 1.56079
1.58511 1.28866 0.91695 0.91857 0.91939 0.96331 0.96095 0.93050
0.84061 0.94350 0.94309 0.93019 0.88578 0.91095 0.88243 0.90873
0.88272 0.89055 0.91081
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -5.00 9.16 71.98 0.66 -4.34 16
2 C 0.10 4.02 2.53 44.91 0.11 4.13 16
3 H 0.05 2.04 7.80 -2.38 -0.02 2.03 16
4 C 0.00 -0.09 3.72 29.85 0.11 0.02 16
5 C -0.49 -30.03 9.39 25.60 0.24 -29.79 16
6 H 0.03 1.76 7.99 -2.91 -0.02 1.73 16
7 C -0.01 -0.53 5.47 84.66 0.46 -0.07 16
8 N -0.96 -64.02 13.96 21.45 0.30 -63.72 16
9 Si 0.95 46.41 27.47 68.60 1.88 48.30 16
10 H -0.27 -12.63 7.11 99.48 0.71 -11.93 16
11 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16
12 H -0.25 -10.93 6.54 99.48 0.65 -10.28 16
13 N -0.69 -26.50 5.96 -491.58 -2.93 -29.44 16
14 C 0.07 2.41 5.42 86.31 0.47 2.88 16
15 C -0.10 -2.94 5.10 30.60 0.16 -2.78 16
16 C 0.07 1.75 3.25 31.09 0.10 1.85 16
17 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16
18 C -0.15 -2.64 6.63 31.61 0.21 -2.43 16
19 C -0.15 -2.42 7.09 31.61 0.22 -2.20 16
20 C 0.03 0.68 7.63 72.48 0.55 1.23 16
21 O -0.41 -12.21 11.13 -148.98 -1.66 -13.87 16
22 H 0.06 1.76 8.13 -2.39 -0.02 1.74 16
23 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16
24 H 0.06 1.60 7.45 -2.39 -0.02 1.58 16
25 H 0.02 0.87 7.58 -2.38 -0.02 0.85 16
26 H 0.02 0.99 7.19 -2.39 -0.02 0.97 16
27 H 0.26 16.20 8.31 -92.71 -0.77 15.42 16
28 H 0.34 11.25 8.47 -89.69 -0.76 10.49 16
29 H 0.04 1.09 7.44 -2.39 -0.02 1.07 16
30 H 0.04 1.56 7.92 -2.39 -0.02 1.54 16
31 H 0.05 1.77 8.14 -2.38 -0.02 1.75 16
32 H 0.10 2.16 8.14 -2.38 -0.02 2.14 16
33 H 0.07 1.37 7.87 -2.39 -0.02 1.35 16
34 H 0.10 1.26 8.14 -2.39 -0.02 1.25 16
35 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16
36 H 0.10 1.08 8.14 -2.38 -0.02 1.06 16
37 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16
38 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16
Total: -1.00 -74.23 304.10 1.08 -73.15
By element:
Atomic # 1 Polarization: 16.89 SS G_CDS: 0.19 Total: 17.08 kcal
Atomic # 6 Polarization: -34.80 SS G_CDS: 3.30 Total: -31.50 kcal
Atomic # 7 Polarization: -90.52 SS G_CDS: -2.63 Total: -93.16 kcal
Atomic # 8 Polarization: -12.21 SS G_CDS: -1.66 Total: -13.87 kcal
Atomic # 14 Polarization: 46.41 SS G_CDS: 1.88 Total: 48.30 kcal
Total: -74.23 1.08 -73.15 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000379667677.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -13.744 kcal
(2) G-P(sol) polarization free energy of solvation -74.231 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.976 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.082 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.149 kcal
(6) G-S(sol) free energy of system = (1) + (5) -86.894 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.38 seconds