Wall clock time and date at job start Mon Mar 30 2020 03:23:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.45399 * 2 1 4 4 C 1.53036 * 109.45921 * 240.02964 * 2 1 3 5 5 H 1.08998 * 109.53754 * 60.84241 * 4 2 1 6 6 O 1.42899 * 109.50597 * 300.74525 * 4 2 1 7 7 C 1.53119 * 109.27935 * 180.80559 * 4 2 1 8 8 C 1.53120 * 109.16026 * 57.65258 * 7 4 2 9 9 C 1.53031 * 109.27889 * 302.34545 * 8 7 4 10 10 N 1.46844 * 109.46669 * 119.97625 * 2 1 3 11 11 C 1.46902 * 110.99957 * 305.85695 * 10 2 1 12 12 C 1.53006 * 109.46626 * 301.83181 * 11 10 2 13 13 C 1.52999 * 109.46626 * 179.97438 * 12 11 10 14 14 C 1.50706 * 109.46957 * 180.02562 * 13 12 11 15 15 H 1.07999 * 119.99816 * 0.02562 * 14 13 12 16 16 C 1.37876 * 120.00340 * 180.02562 * 14 13 12 17 17 N 1.31514 * 119.99773 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 120.00296 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.46692 * 359.97438 * 18 16 14 20 20 H 1.48497 * 109.47025 * 119.99570 * 18 16 14 21 21 H 1.48492 * 109.46854 * 239.99727 * 18 16 14 22 22 H 1.09006 * 109.47118 * 300.02524 * 1 2 3 23 23 H 1.08997 * 109.47449 * 60.02097 * 1 2 3 24 24 H 1.08998 * 109.47496 * 180.02562 * 1 2 3 25 25 H 0.96697 * 114.00745 * 180.19348 * 6 4 2 26 26 H 1.09007 * 109.52214 * 297.74752 * 7 4 2 27 27 H 1.09003 * 109.52352 * 177.56511 * 7 4 2 28 28 H 1.09000 * 109.49629 * 182.40757 * 8 7 4 29 29 H 1.08998 * 109.53126 * 62.31014 * 8 7 4 30 30 H 1.09003 * 109.46695 * 299.16465 * 9 8 7 31 31 H 1.08996 * 109.46615 * 179.19388 * 9 8 7 32 32 H 1.09000 * 109.47263 * 181.83487 * 11 10 2 33 33 H 1.09001 * 109.47582 * 61.82766 * 11 10 2 34 34 H 1.08993 * 109.46955 * 300.00347 * 12 11 10 35 35 H 1.09000 * 109.47050 * 60.00176 * 12 11 10 36 36 H 1.08993 * 109.47839 * 299.99931 * 13 12 11 37 37 H 1.09000 * 109.47160 * 60.00369 * 13 12 11 38 38 H 0.97000 * 120.00540 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0398 -0.7208 -1.2500 5 1 1.6893 -0.1987 -2.1403 6 8 1.5495 -2.0630 -1.2601 7 6 3.5708 -0.7361 -1.2357 8 6 4.0547 -1.4189 0.0465 9 6 3.4865 -0.6778 1.2589 10 7 2.0193 -0.6918 1.1993 11 6 1.4374 -0.1107 2.4165 12 6 1.7846 1.3778 2.4874 13 6 1.1779 1.9831 3.7548 14 6 1.5194 3.4494 3.8243 15 1 2.1097 3.9040 3.0424 16 6 1.0783 4.2104 4.8860 17 7 0.3590 3.6569 5.8378 18 14 1.5009 6.0279 4.9718 19 1 2.3136 6.4035 3.7870 20 1 0.2493 6.8269 4.9876 21 1 2.2762 6.2979 6.2091 22 1 -0.3634 0.5142 0.8898 23 1 -0.3634 0.5135 -0.8901 24 1 -0.3634 -1.0276 0.0005 25 1 1.8365 -2.5809 -2.0246 26 1 3.9456 0.2871 -1.2673 27 1 3.9378 -1.2862 -2.1023 28 1 5.1438 -1.3947 0.0828 29 1 3.7129 -2.4538 0.0595 30 1 3.8404 0.3532 1.2531 31 1 3.8175 -1.1700 2.1734 32 1 1.8414 -0.6200 3.2914 33 1 0.3542 -0.2303 2.3944 34 1 2.8677 1.4975 2.5095 35 1 1.3806 1.8872 1.6125 36 1 0.0948 1.8635 3.7322 37 1 1.5816 1.4738 4.6299 38 1 0.0483 4.1923 6.5846 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000384955979.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:23 Heat of formation + Delta-G solvation = -67.151470 kcal Electronic energy + Delta-G solvation = -16596.749850 eV Core-core repulsion = 14052.268737 eV Total energy + Delta-G solvation = -2544.481113 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.65544 -36.32762 -33.95029 -32.90689 -31.62281 -30.30369 -26.96635 -26.18927 -24.00414 -22.26510 -21.25777 -20.67204 -18.73785 -16.81181 -16.29757 -15.56879 -15.41805 -14.72603 -14.47579 -14.05602 -13.90226 -13.38166 -12.62231 -12.54961 -12.27205 -12.02312 -11.90621 -11.63415 -11.24926 -11.08445 -10.91838 -10.84232 -10.70802 -10.60562 -10.54129 -9.98091 -9.70498 -9.56523 -9.38272 -9.13722 -8.33946 -7.69356 -5.98550 -4.01102 3.30675 3.38046 3.42051 4.17860 4.39606 4.46830 4.79058 4.81529 5.01466 5.25346 5.36785 5.44593 5.54693 5.65102 5.69449 5.76219 5.84507 5.88671 5.94755 6.03255 6.11665 6.17350 6.28771 6.34358 6.41361 6.55541 6.69435 6.89480 7.10024 7.50049 7.55460 7.69093 7.77415 7.84686 8.01471 8.44847 9.06120 9.62902 11.12505 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.042954 B = 0.005643 C = 0.005539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 651.703324 B = 4960.580084 C = 5053.714782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.088 3.912 3 H 0.056 0.944 4 C 0.114 3.886 5 H 0.052 0.948 6 O -0.545 6.545 7 C -0.155 4.155 8 C -0.110 4.110 9 C 0.052 3.948 10 N -0.523 5.523 11 C 0.049 3.951 12 C -0.145 4.145 13 C 0.025 3.975 14 C -0.519 4.519 15 H 0.052 0.948 16 C 0.056 3.944 17 N -0.895 5.895 18 Si 0.890 3.110 19 H -0.274 1.274 20 H -0.284 1.284 21 H -0.284 1.284 22 H 0.065 0.935 23 H 0.051 0.949 24 H 0.068 0.932 25 H 0.364 0.636 26 H 0.067 0.933 27 H 0.062 0.938 28 H 0.060 0.940 29 H 0.073 0.927 30 H 0.035 0.965 31 H 0.072 0.928 32 H 0.068 0.932 33 H 0.075 0.925 34 H 0.046 0.954 35 H 0.048 0.952 36 H 0.016 0.984 37 H 0.015 0.985 38 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.793 -9.740 -14.238 17.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.021 4.021 3 H 0.073 0.927 4 C 0.054 3.946 5 H 0.070 0.930 6 O -0.348 6.348 7 C -0.193 4.193 8 C -0.148 4.148 9 C -0.076 4.076 10 N -0.247 5.247 11 C -0.078 4.078 12 C -0.184 4.184 13 C -0.013 4.013 14 C -0.557 4.557 15 H 0.071 0.929 16 C -0.145 4.145 17 N -0.535 5.535 18 Si 0.718 3.282 19 H -0.198 1.198 20 H -0.210 1.210 21 H -0.210 1.210 22 H 0.083 0.917 23 H 0.070 0.930 24 H 0.087 0.913 25 H 0.209 0.791 26 H 0.086 0.914 27 H 0.080 0.920 28 H 0.078 0.922 29 H 0.092 0.908 30 H 0.054 0.946 31 H 0.091 0.909 32 H 0.087 0.913 33 H 0.093 0.907 34 H 0.064 0.936 35 H 0.067 0.933 36 H 0.034 0.966 37 H 0.033 0.967 38 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 4.274 -9.999 -13.542 17.368 hybrid contribution 0.823 1.855 -0.304 2.053 sum 5.097 -8.144 -13.846 16.853 Atomic orbital electron populations 1.21827 0.93962 1.02758 1.01697 1.21581 0.96232 0.94868 0.89396 0.92674 1.21859 0.91918 0.83799 0.96996 0.93028 1.86679 1.75427 1.23736 1.48958 1.22315 0.96916 1.01455 0.98585 1.21479 0.98944 1.00644 0.93752 1.22067 0.88437 0.98860 0.98267 1.62193 1.06232 1.54261 1.01967 1.22386 1.00116 0.94322 0.90950 1.22231 1.00164 0.94719 1.01243 1.19021 0.95928 0.95073 0.91283 1.21296 1.32967 0.94645 1.06822 0.92923 1.25025 0.95232 0.98434 0.95771 1.69974 1.36543 1.35896 1.11045 0.86568 0.78153 0.85576 0.77906 1.19846 1.20983 1.21004 0.91655 0.93041 0.91307 0.79062 0.91441 0.91979 0.92159 0.90793 0.94637 0.90921 0.91303 0.90669 0.93558 0.93322 0.96604 0.96657 0.93076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.14 8.53 37.16 0.32 -1.82 16 2 C 0.09 1.30 1.62 -67.73 -0.11 1.19 16 3 H 0.06 0.88 6.61 -51.93 -0.34 0.54 16 4 C 0.11 1.36 3.25 -26.65 -0.09 1.28 16 5 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 6 O -0.54 -6.56 11.95 -35.23 -0.42 -6.98 16 7 C -0.15 -1.66 5.70 -26.61 -0.15 -1.81 16 8 C -0.11 -1.30 5.94 -26.65 -0.16 -1.46 16 9 C 0.05 0.76 5.05 -3.84 -0.02 0.74 16 10 N -0.52 -8.39 4.58 -226.69 -1.04 -9.43 16 11 C 0.05 0.90 4.79 -3.82 -0.02 0.88 16 12 C -0.14 -3.05 4.35 -26.73 -0.12 -3.16 16 13 C 0.02 0.65 4.97 -27.88 -0.14 0.51 16 14 C -0.52 -14.99 9.11 -34.44 -0.31 -15.30 16 15 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 16 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 17 N -0.90 -27.30 13.29 55.43 0.74 -26.56 16 18 Si 0.89 21.95 29.54 -169.99 -5.02 16.93 16 19 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 20 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 21 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 22 H 0.06 1.06 6.07 -51.93 -0.32 0.74 16 23 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 24 H 0.07 1.04 7.67 -51.93 -0.40 0.64 16 25 H 0.36 2.76 9.08 45.56 0.41 3.18 16 26 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 28 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.07 0.91 7.80 -51.93 -0.41 0.51 16 30 H 0.04 0.55 6.75 -51.93 -0.35 0.20 16 31 H 0.07 1.05 8.06 -51.93 -0.42 0.63 16 32 H 0.07 1.26 8.06 -51.93 -0.42 0.84 16 33 H 0.07 1.39 6.32 -51.93 -0.33 1.06 16 34 H 0.05 0.98 6.68 -51.93 -0.35 0.63 16 35 H 0.05 1.02 6.23 -51.93 -0.32 0.70 16 36 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 37 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 291.83 15.07 4.40 4.40 Total: -1.00 -31.44 291.83 -7.97 -39.42 By element: Atomic # 1 Polarization: 5.38 SS G_CDS: -5.74 Total: -0.35 kcal Atomic # 6 Polarization: -16.52 SS G_CDS: -0.89 Total: -17.41 kcal Atomic # 7 Polarization: -35.69 SS G_CDS: -0.30 Total: -35.99 kcal Atomic # 8 Polarization: -6.56 SS G_CDS: -0.42 Total: -6.98 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -31.44 -7.97 -39.42 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000384955979.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.736 kcal (2) G-P(sol) polarization free energy of solvation -31.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds