Wall clock time and date at job start Mon Mar 30 2020 03:23:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.45399 * 2 1 4 4 C 1.53036 * 109.45921 * 240.02964 * 2 1 3 5 5 H 1.08998 * 109.53754 * 60.84241 * 4 2 1 6 6 O 1.42899 * 109.50597 * 300.74525 * 4 2 1 7 7 C 1.53119 * 109.27935 * 180.80559 * 4 2 1 8 8 C 1.53120 * 109.16026 * 57.65258 * 7 4 2 9 9 C 1.53031 * 109.27889 * 302.34545 * 8 7 4 10 10 N 1.46844 * 109.46669 * 119.97625 * 2 1 3 11 11 C 1.46902 * 110.99957 * 305.85695 * 10 2 1 12 12 C 1.53006 * 109.46626 * 301.83181 * 11 10 2 13 13 C 1.52999 * 109.46626 * 179.97438 * 12 11 10 14 14 C 1.50706 * 109.46957 * 180.02562 * 13 12 11 15 15 H 1.07999 * 119.99816 * 0.02562 * 14 13 12 16 16 C 1.37876 * 120.00340 * 180.02562 * 14 13 12 17 17 N 1.31514 * 119.99773 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 120.00296 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.46692 * 359.97438 * 18 16 14 20 20 H 1.48497 * 109.47025 * 119.99570 * 18 16 14 21 21 H 1.48492 * 109.46854 * 239.99727 * 18 16 14 22 22 H 1.09006 * 109.47118 * 300.02524 * 1 2 3 23 23 H 1.08997 * 109.47449 * 60.02097 * 1 2 3 24 24 H 1.08998 * 109.47496 * 180.02562 * 1 2 3 25 25 H 0.96697 * 114.00745 * 180.19348 * 6 4 2 26 26 H 1.09007 * 109.52214 * 297.74752 * 7 4 2 27 27 H 1.09003 * 109.52352 * 177.56511 * 7 4 2 28 28 H 1.09000 * 109.49629 * 182.40757 * 8 7 4 29 29 H 1.08998 * 109.53126 * 62.31014 * 8 7 4 30 30 H 1.09003 * 109.46695 * 299.16465 * 9 8 7 31 31 H 1.08996 * 109.46615 * 179.19388 * 9 8 7 32 32 H 1.09000 * 109.47263 * 181.83487 * 11 10 2 33 33 H 1.09001 * 109.47582 * 61.82766 * 11 10 2 34 34 H 1.08993 * 109.46955 * 300.00347 * 12 11 10 35 35 H 1.09000 * 109.47050 * 60.00176 * 12 11 10 36 36 H 1.08993 * 109.47839 * 299.99931 * 13 12 11 37 37 H 1.09000 * 109.47160 * 60.00369 * 13 12 11 38 38 H 0.97000 * 120.00540 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0398 -0.7208 -1.2500 5 1 1.6893 -0.1987 -2.1403 6 8 1.5495 -2.0630 -1.2601 7 6 3.5708 -0.7361 -1.2357 8 6 4.0547 -1.4189 0.0465 9 6 3.4865 -0.6778 1.2589 10 7 2.0193 -0.6918 1.1993 11 6 1.4374 -0.1107 2.4165 12 6 1.7846 1.3778 2.4874 13 6 1.1779 1.9831 3.7548 14 6 1.5194 3.4494 3.8243 15 1 2.1097 3.9040 3.0424 16 6 1.0783 4.2104 4.8860 17 7 0.3590 3.6569 5.8378 18 14 1.5009 6.0279 4.9718 19 1 2.3136 6.4035 3.7870 20 1 0.2493 6.8269 4.9876 21 1 2.2762 6.2979 6.2091 22 1 -0.3634 0.5142 0.8898 23 1 -0.3634 0.5135 -0.8901 24 1 -0.3634 -1.0276 0.0005 25 1 1.8365 -2.5809 -2.0246 26 1 3.9456 0.2871 -1.2673 27 1 3.9378 -1.2862 -2.1023 28 1 5.1438 -1.3947 0.0828 29 1 3.7129 -2.4538 0.0595 30 1 3.8404 0.3532 1.2531 31 1 3.8175 -1.1700 2.1734 32 1 1.8414 -0.6200 3.2914 33 1 0.3542 -0.2303 2.3944 34 1 2.8677 1.4975 2.5095 35 1 1.3806 1.8872 1.6125 36 1 0.0948 1.8635 3.7322 37 1 1.5816 1.4738 4.6299 38 1 0.0483 4.1923 6.5846 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000384955979.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:20 Heat of formation + Delta-G solvation = -89.768096 kcal Electronic energy + Delta-G solvation = -16597.730580 eV Core-core repulsion = 14052.268737 eV Total energy + Delta-G solvation = -2545.461843 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.79477 -37.50354 -35.65603 -34.37091 -33.07607 -31.82264 -28.43711 -27.61381 -25.60167 -23.62312 -22.76091 -22.01160 -19.99663 -18.53493 -17.68614 -16.83918 -16.71776 -16.45406 -15.69251 -15.39444 -15.28234 -14.73967 -14.12897 -14.00326 -13.85870 -13.37621 -13.12612 -12.98101 -12.78778 -12.65209 -12.53977 -12.36819 -12.30141 -11.93509 -11.73578 -11.47315 -11.36544 -11.30877 -10.92146 -10.58895 -10.58239 -9.07359 -8.21990 -6.34647 1.36927 1.37363 1.50619 2.38081 2.98449 3.09801 3.46937 3.83387 3.88152 4.05034 4.10370 4.31559 4.32993 4.41798 4.52968 4.54734 4.64511 4.72583 4.79713 4.84293 4.95693 4.99324 5.00615 5.07432 5.17802 5.19827 5.28034 5.34957 5.45922 5.51767 5.68250 5.81356 6.15072 6.24486 6.29973 6.81803 7.10486 7.34782 8.89161 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.042954 B = 0.005643 C = 0.005539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 651.703324 B = 4960.580084 C = 5053.714782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.079 3.921 3 H 0.043 0.957 4 C 0.118 3.882 5 H 0.071 0.929 6 O -0.562 6.562 7 C -0.151 4.151 8 C -0.104 4.104 9 C 0.046 3.954 10 N -0.522 5.522 11 C 0.060 3.940 12 C -0.124 4.124 13 C 0.029 3.971 14 C -0.544 4.544 15 H 0.055 0.945 16 C 0.000 4.000 17 N -0.932 5.932 18 Si 0.965 3.035 19 H -0.264 1.264 20 H -0.276 1.276 21 H -0.276 1.276 22 H 0.041 0.959 23 H 0.069 0.931 24 H 0.063 0.937 25 H 0.385 0.615 26 H 0.066 0.934 27 H 0.092 0.908 28 H 0.078 0.922 29 H 0.071 0.929 30 H 0.023 0.977 31 H 0.068 0.932 32 H 0.064 0.936 33 H 0.069 0.931 34 H 0.045 0.955 35 H 0.048 0.952 36 H -0.009 1.009 37 H -0.010 1.010 38 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.886 -9.515 -16.127 19.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.030 4.030 3 H 0.060 0.940 4 C 0.059 3.941 5 H 0.089 0.911 6 O -0.369 6.369 7 C -0.189 4.189 8 C -0.142 4.142 9 C -0.082 4.082 10 N -0.245 5.245 11 C -0.068 4.068 12 C -0.163 4.163 13 C -0.009 4.009 14 C -0.582 4.582 15 H 0.073 0.927 16 C -0.198 4.198 17 N -0.573 5.573 18 Si 0.790 3.210 19 H -0.188 1.188 20 H -0.201 1.201 21 H -0.202 1.202 22 H 0.060 0.940 23 H 0.088 0.912 24 H 0.082 0.918 25 H 0.234 0.766 26 H 0.084 0.916 27 H 0.110 0.890 28 H 0.097 0.903 29 H 0.090 0.910 30 H 0.042 0.958 31 H 0.087 0.913 32 H 0.082 0.918 33 H 0.087 0.913 34 H 0.063 0.937 35 H 0.067 0.933 36 H 0.010 0.990 37 H 0.009 0.991 38 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 5.380 -9.796 -15.461 19.078 hybrid contribution 0.459 1.735 0.290 1.818 sum 5.839 -8.061 -15.171 18.145 Atomic orbital electron populations 1.21771 0.94195 1.02305 1.01463 1.21724 0.96173 0.94737 0.90318 0.93971 1.21766 0.92729 0.83891 0.95709 0.91111 1.86621 1.75819 1.23860 1.50602 1.22310 0.95835 1.01743 0.99005 1.21445 0.99891 0.99979 0.92856 1.22193 0.87450 0.98640 0.99924 1.62252 1.07229 1.53726 1.01326 1.22170 0.99968 0.92289 0.92371 1.21977 0.99432 0.96461 0.98389 1.18915 0.94503 0.94610 0.92847 1.21693 1.33310 0.95925 1.07227 0.92675 1.25991 0.94837 1.03771 0.95192 1.70102 1.37412 1.38036 1.11719 0.85395 0.78237 0.79047 0.78358 1.18757 1.20144 1.20180 0.93994 0.91180 0.91753 0.76612 0.91564 0.88979 0.90337 0.91033 0.95837 0.91339 0.91784 0.91265 0.93676 0.93291 0.99027 0.99136 0.92688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.06 8.53 71.98 0.61 -3.45 16 2 C 0.08 2.27 1.62 44.94 0.07 2.34 16 3 H 0.04 1.32 6.61 -2.39 -0.02 1.31 16 4 C 0.12 2.53 3.25 30.65 0.10 2.62 16 5 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 6 O -0.56 -12.01 11.95 -148.98 -1.78 -13.79 16 7 C -0.15 -2.75 5.70 30.67 0.17 -2.57 16 8 C -0.10 -2.20 5.94 30.64 0.18 -2.02 16 9 C 0.05 1.30 5.05 86.32 0.44 1.74 16 10 N -0.52 -16.58 4.58 -871.12 -3.99 -20.56 16 11 C 0.06 2.25 4.79 86.31 0.41 2.66 16 12 C -0.12 -5.35 4.35 30.60 0.13 -5.22 16 13 C 0.03 1.59 4.97 29.85 0.15 1.74 16 14 C -0.54 -31.94 9.11 25.60 0.23 -31.71 16 15 H 0.05 3.14 7.74 -2.91 -0.02 3.11 16 16 C 0.00 -0.01 5.46 84.65 0.46 0.45 16 17 N -0.93 -57.90 13.29 21.45 0.28 -57.61 16 18 Si 0.97 45.05 29.54 68.60 2.03 47.08 16 19 H -0.26 -11.76 7.11 99.48 0.71 -11.05 16 20 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 21 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 22 H 0.04 1.39 6.07 -2.38 -0.01 1.37 16 23 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 24 H 0.06 1.91 7.67 -2.39 -0.02 1.89 16 25 H 0.39 4.53 9.08 -74.06 -0.67 3.86 16 26 H 0.07 1.25 8.14 -2.38 -0.02 1.23 16 27 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 28 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 29 H 0.07 1.58 7.80 -2.39 -0.02 1.56 16 30 H 0.02 0.72 6.75 -2.39 -0.02 0.70 16 31 H 0.07 1.96 8.06 -2.39 -0.02 1.94 16 32 H 0.06 2.43 8.06 -2.39 -0.02 2.41 16 33 H 0.07 2.66 6.32 -2.39 -0.02 2.64 16 34 H 0.04 1.94 6.68 -2.39 -0.02 1.93 16 35 H 0.05 2.10 6.23 -2.39 -0.01 2.08 16 36 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 37 H -0.01 -0.58 8.14 -2.39 -0.02 -0.59 16 38 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16 Total: -1.00 -67.85 291.83 -0.13 -67.99 By element: Atomic # 1 Polarization: 9.97 SS G_CDS: 0.35 Total: 10.32 kcal Atomic # 6 Polarization: -36.39 SS G_CDS: 2.97 Total: -33.42 kcal Atomic # 7 Polarization: -74.47 SS G_CDS: -3.70 Total: -78.17 kcal Atomic # 8 Polarization: -12.01 SS G_CDS: -1.78 Total: -13.79 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.08 kcal Total: -67.85 -0.13 -67.99 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000384955979.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.781 kcal (2) G-P(sol) polarization free energy of solvation -67.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds