Wall clock time and date at job start Mon Mar 30 2020 03:23:28
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53006 * 1
3 3 H 1.09004 * 109.45853 * 2 1
4 4 C 1.53030 * 109.46234 * 119.97510 * 2 1 3
5 5 H 1.08992 * 109.50788 * 299.16927 * 4 2 1
6 6 O 1.42903 * 109.50442 * 59.24926 * 4 2 1
7 7 C 1.53119 * 109.31050 * 179.20147 * 4 2 1
8 8 C 1.53199 * 109.11845 * 302.36937 * 7 4 2
9 9 C 1.53036 * 109.30205 * 57.62934 * 8 7 4
10 10 N 1.46845 * 109.45270 * 240.02633 * 2 1 3
11 11 C 1.46904 * 111.00389 * 54.14962 * 10 2 1
12 12 C 1.52995 * 109.47407 * 169.99666 * 11 10 2
13 13 C 1.52995 * 109.47112 * 179.97438 * 12 11 10
14 14 C 1.50704 * 109.47341 * 180.02562 * 13 12 11
15 15 H 1.08004 * 119.99486 * 0.02562 * 14 13 12
16 16 C 1.37872 * 120.00396 * 180.02562 * 14 13 12
17 17 N 1.31515 * 119.99970 * 359.97438 * 16 14 13
18 18 Si 1.86804 * 120.00103 * 180.02562 * 16 14 13
19 19 H 1.48493 * 109.47015 * 359.97438 * 18 16 14
20 20 H 1.48499 * 109.47158 * 119.99819 * 18 16 14
21 21 H 1.48495 * 109.46780 * 239.99991 * 18 16 14
22 22 H 1.09001 * 109.47048 * 300.02258 * 1 2 3
23 23 H 1.09004 * 109.47160 * 60.02429 * 1 2 3
24 24 H 1.09003 * 109.46637 * 180.02562 * 1 2 3
25 25 H 0.96700 * 114.00311 * 179.97438 * 6 4 2
26 26 H 1.09002 * 109.51891 * 62.23914 * 7 4 2
27 27 H 1.09005 * 109.52613 * 182.41870 * 7 4 2
28 28 H 1.09000 * 109.49186 * 297.67366 * 8 7 4
29 29 H 1.09003 * 109.49015 * 177.57683 * 8 7 4
30 30 H 1.08995 * 109.45945 * 180.80556 * 9 8 7
31 31 H 1.09000 * 109.46099 * 60.83428 * 9 8 7
32 32 H 1.08999 * 109.46769 * 289.99965 * 11 10 2
33 33 H 1.08999 * 109.46724 * 49.99847 * 11 10 2
34 34 H 1.09001 * 109.47198 * 300.00417 * 12 11 10
35 35 H 1.09004 * 109.46772 * 59.99969 * 12 11 10
36 36 H 1.09001 * 109.47523 * 300.00332 * 13 12 11
37 37 H 1.09004 * 109.47234 * 60.00366 * 13 12 11
38 38 H 0.97002 * 119.99914 * 179.97438 * 17 16 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 1 1.8932 1.0278 0.0000
4 6 2.0399 -0.7209 1.2499
5 1 1.6891 -0.1986 2.1399
6 8 1.5495 -2.0631 1.2600
7 6 3.5710 -0.7363 1.2363
8 6 4.0546 -1.4191 -0.0470
9 6 3.4863 -0.6779 -1.2593
10 7 2.0191 -0.6918 -1.1994
11 6 1.4371 -0.1105 -2.4166
12 6 2.1493 -0.6804 -3.6449
13 6 1.5427 -0.0755 -4.9125
14 6 2.2438 -0.6372 -6.1225
15 1 3.0420 -1.3544 -5.9995
16 6 1.8664 -0.2358 -7.3863
17 7 0.8941 0.6371 -7.5360
18 14 2.7350 -0.9327 -8.8861
19 1 3.7840 -1.8892 -8.4505
20 1 1.7498 -1.6357 -9.7465
21 1 3.3621 0.1733 -9.6533
22 1 -0.3633 0.5142 0.8898
23 1 -0.3634 0.5135 -0.8902
24 1 -0.3633 -1.0277 0.0005
25 1 1.8345 -2.5803 2.0257
26 1 3.9458 0.2867 1.2680
27 1 3.9375 -1.2864 2.1031
28 1 3.7122 -2.4538 -0.0597
29 1 5.1437 -1.3951 -0.0835
30 1 3.8172 -1.1701 -2.1738
31 1 3.8403 0.3530 -1.2534
32 1 0.3763 -0.3562 -2.4651
33 1 1.5587 0.9725 -2.3960
34 1 3.2102 -0.4347 -3.5963
35 1 2.0277 -1.7634 -3.6654
36 1 0.4819 -0.3215 -4.9609
37 1 1.6639 1.0076 -4.8922
38 1 0.6289 0.9199 -8.4252
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000384955981.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:23:28
Heat of formation + Delta-G solvation = -65.454296 kcal
Electronic energy + Delta-G solvation = -16400.802058 eV
Core-core repulsion = 13856.394540 eV
Total energy + Delta-G solvation = -2544.407518 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 227.163 amu
Computer time = 0.50 seconds
Orbital eigenvalues (eV)
-39.59307 -36.29376 -33.91857 -32.98189 -31.98578 -30.15358 -26.99989 -26.22686
-24.19902 -22.22962 -21.25946 -19.84305 -19.40126 -16.88234 -16.30193 -15.60546
-15.04554 -14.99077 -14.50841 -14.22530 -13.75546 -13.43364 -13.03875 -12.48970
-12.29988 -11.98583 -11.80452 -11.58384 -11.39975 -11.17682 -11.13188 -10.83283
-10.72058 -10.48553 -10.28258 -10.02723 -9.76039 -9.52159 -9.26847 -8.97499
-8.30447 -7.85201 -5.95723 -3.97538 3.33920 3.41127 3.45782 4.10060
4.33502 4.50671 4.73080 4.76886 4.96511 5.20318 5.39631 5.40194
5.48676 5.52427 5.64449 5.69474 5.80880 5.84446 5.89434 5.98871
6.05265 6.09123 6.28201 6.35824 6.40186 6.52092 6.78213 6.87521
7.16995 7.50589 7.54099 7.73297 7.74730 7.88820 8.05108 8.48627
9.09878 9.66292 11.15831
Molecular weight = 227.16amu
Principal moments of inertia in cm(-1)
A = 0.046656 B = 0.005290 C = 0.004952
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 599.992710 B = 5291.414811 C = 5652.485106
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.144 4.144
2 C 0.089 3.911
3 H 0.045 0.955
4 C 0.115 3.885
5 H 0.051 0.949
6 O -0.543 6.543
7 C -0.154 4.154
8 C -0.112 4.112
9 C 0.048 3.952
10 N -0.522 5.522
11 C 0.056 3.944
12 C -0.111 4.111
13 C 0.022 3.978
14 C -0.517 4.517
15 H 0.055 0.945
16 C 0.055 3.945
17 N -0.897 5.897
18 Si 0.891 3.109
19 H -0.273 1.273
20 H -0.284 1.284
21 H -0.285 1.285
22 H 0.051 0.949
23 H 0.059 0.941
24 H 0.072 0.928
25 H 0.366 0.634
26 H 0.065 0.935
27 H 0.062 0.938
28 H 0.076 0.924
29 H 0.061 0.939
30 H 0.089 0.911
31 H 0.025 0.975
32 H 0.073 0.927
33 H 0.025 0.975
34 H 0.049 0.951
35 H 0.056 0.944
36 H 0.016 0.984
37 H 0.013 0.987
38 H 0.259 0.741
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.458 -1.676 18.835 19.223
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.202 4.202
2 C -0.020 4.020
3 H 0.062 0.938
4 C 0.055 3.945
5 H 0.069 0.931
6 O -0.346 6.346
7 C -0.192 4.192
8 C -0.150 4.150
9 C -0.079 4.079
10 N -0.247 5.247
11 C -0.071 4.071
12 C -0.149 4.149
13 C -0.016 4.016
14 C -0.555 4.555
15 H 0.073 0.927
16 C -0.145 4.145
17 N -0.536 5.536
18 Si 0.719 3.281
19 H -0.197 1.197
20 H -0.210 1.210
21 H -0.211 1.211
22 H 0.070 0.930
23 H 0.078 0.922
24 H 0.091 0.909
25 H 0.211 0.789
26 H 0.084 0.916
27 H 0.081 0.919
28 H 0.094 0.906
29 H 0.079 0.921
30 H 0.107 0.893
31 H 0.044 0.956
32 H 0.092 0.908
33 H 0.043 0.957
34 H 0.067 0.933
35 H 0.075 0.925
36 H 0.035 0.965
37 H 0.031 0.969
38 H 0.069 0.931
Dipole moment (debyes) X Y Z Total
from point charges 2.928 -1.865 18.165 18.494
hybrid contribution 1.003 0.500 -0.405 1.192
sum 3.931 -1.365 17.759 18.240
Atomic orbital electron populations
1.21813 0.93954 1.03212 1.01178 1.21602 0.96203 0.94161 0.90055
0.93774 1.21809 0.92025 0.84018 0.96627 0.93101 1.86693 1.75451
1.23603 1.48885 1.22334 0.96786 1.01307 0.98811 1.21518 0.99033
1.00891 0.93521 1.22209 0.88096 0.98423 0.99215 1.61984 1.06480
1.54730 1.01542 1.22319 0.99806 0.95979 0.89023 1.21791 0.98645
1.00380 0.94092 1.19077 0.96202 0.95821 0.90498 1.21296 1.18296
1.24811 0.91100 0.92673 1.25028 0.95200 0.95200 0.99104 1.69981
1.28847 1.32284 1.22525 0.86549 0.79615 0.78902 0.83024 1.19743
1.21011 1.21091 0.93026 0.92226 0.90891 0.78911 0.91648 0.91912
0.90570 0.92070 0.89259 0.95635 0.90834 0.95696 0.93278 0.92537
0.96546 0.96870 0.93131
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.92 8.63 37.16 0.32 -1.60 16
2 C 0.09 1.22 2.19 -67.72 -0.15 1.07 16
3 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16
4 C 0.11 1.30 3.24 -26.65 -0.09 1.21 16
5 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16
6 O -0.54 -6.49 11.95 -35.23 -0.42 -6.91 16
7 C -0.15 -1.58 5.71 -26.57 -0.15 -1.73 16
8 C -0.11 -1.36 5.94 -26.61 -0.16 -1.51 16
9 C 0.05 0.73 4.85 -3.83 -0.02 0.71 16
10 N -0.52 -8.51 4.52 -226.69 -1.03 -9.53 16
11 C 0.06 1.03 4.36 -3.82 -0.02 1.02 16
12 C -0.11 -2.41 4.40 -26.74 -0.12 -2.53 16
13 C 0.02 0.58 4.97 -27.88 -0.14 0.44 16
14 C -0.52 -15.02 9.11 -34.44 -0.31 -15.34 16
15 H 0.06 1.56 7.74 -52.48 -0.41 1.16 16
16 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16
17 N -0.90 -27.50 13.29 55.43 0.74 -26.77 16
18 Si 0.89 22.07 29.54 -169.99 -5.02 17.05 16
19 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16
20 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16
21 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16
22 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16
23 H 0.06 0.83 6.55 -51.93 -0.34 0.49 16
24 H 0.07 1.07 7.66 -51.93 -0.40 0.67 16
25 H 0.37 2.74 9.08 45.56 0.41 3.15 16
26 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16
27 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16
28 H 0.08 1.00 7.80 -51.93 -0.40 0.59 16
29 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16
30 H 0.09 1.46 5.81 -51.93 -0.30 1.16 16
31 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16
32 H 0.07 1.39 6.84 -51.93 -0.36 1.04 16
33 H 0.02 0.47 8.08 -51.93 -0.42 0.05 16
34 H 0.05 1.03 6.21 -51.93 -0.32 0.71 16
35 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16
36 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16
37 H 0.01 0.37 8.14 -51.93 -0.42 -0.06 16
38 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16
LS Contribution 294.99 15.07 4.45 4.45
Total: -1.00 -31.80 294.99 -8.11 -39.90
By element:
Atomic # 1 Polarization: 4.44 SS G_CDS: -5.90 Total: -1.46 kcal
Atomic # 6 Polarization: -15.81 SS G_CDS: -0.93 Total: -16.73 kcal
Atomic # 7 Polarization: -36.01 SS G_CDS: -0.29 Total: -36.30 kcal
Atomic # 8 Polarization: -6.49 SS G_CDS: -0.42 Total: -6.91 kcal
Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal
Total LS contribution 4.45 Total: 4.45 kcal
Total: -31.80 -8.11 -39.90 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000384955981.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -25.550 kcal
(2) G-P(sol) polarization free energy of solvation -31.796 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.345 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.109 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.905 kcal
(6) G-S(sol) free energy of system = (1) + (5) -65.454 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.50 seconds