Wall clock time and date at job start Mon Mar 30 2020 03:23:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09004 * 109.45853 * 2 1 4 4 C 1.53030 * 109.46234 * 119.97510 * 2 1 3 5 5 H 1.08992 * 109.50788 * 299.16927 * 4 2 1 6 6 O 1.42903 * 109.50442 * 59.24926 * 4 2 1 7 7 C 1.53119 * 109.31050 * 179.20147 * 4 2 1 8 8 C 1.53199 * 109.11845 * 302.36937 * 7 4 2 9 9 C 1.53036 * 109.30205 * 57.62934 * 8 7 4 10 10 N 1.46845 * 109.45270 * 240.02633 * 2 1 3 11 11 C 1.46904 * 111.00389 * 54.14962 * 10 2 1 12 12 C 1.52995 * 109.47407 * 169.99666 * 11 10 2 13 13 C 1.52995 * 109.47112 * 179.97438 * 12 11 10 14 14 C 1.50704 * 109.47341 * 180.02562 * 13 12 11 15 15 H 1.08004 * 119.99486 * 0.02562 * 14 13 12 16 16 C 1.37872 * 120.00396 * 180.02562 * 14 13 12 17 17 N 1.31515 * 119.99970 * 359.97438 * 16 14 13 18 18 Si 1.86804 * 120.00103 * 180.02562 * 16 14 13 19 19 H 1.48493 * 109.47015 * 359.97438 * 18 16 14 20 20 H 1.48499 * 109.47158 * 119.99819 * 18 16 14 21 21 H 1.48495 * 109.46780 * 239.99991 * 18 16 14 22 22 H 1.09001 * 109.47048 * 300.02258 * 1 2 3 23 23 H 1.09004 * 109.47160 * 60.02429 * 1 2 3 24 24 H 1.09003 * 109.46637 * 180.02562 * 1 2 3 25 25 H 0.96700 * 114.00311 * 179.97438 * 6 4 2 26 26 H 1.09002 * 109.51891 * 62.23914 * 7 4 2 27 27 H 1.09005 * 109.52613 * 182.41870 * 7 4 2 28 28 H 1.09000 * 109.49186 * 297.67366 * 8 7 4 29 29 H 1.09003 * 109.49015 * 177.57683 * 8 7 4 30 30 H 1.08995 * 109.45945 * 180.80556 * 9 8 7 31 31 H 1.09000 * 109.46099 * 60.83428 * 9 8 7 32 32 H 1.08999 * 109.46769 * 289.99965 * 11 10 2 33 33 H 1.08999 * 109.46724 * 49.99847 * 11 10 2 34 34 H 1.09001 * 109.47198 * 300.00417 * 12 11 10 35 35 H 1.09004 * 109.46772 * 59.99969 * 12 11 10 36 36 H 1.09001 * 109.47523 * 300.00332 * 13 12 11 37 37 H 1.09004 * 109.47234 * 60.00366 * 13 12 11 38 38 H 0.97002 * 119.99914 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0399 -0.7209 1.2499 5 1 1.6891 -0.1986 2.1399 6 8 1.5495 -2.0631 1.2600 7 6 3.5710 -0.7363 1.2363 8 6 4.0546 -1.4191 -0.0470 9 6 3.4863 -0.6779 -1.2593 10 7 2.0191 -0.6918 -1.1994 11 6 1.4371 -0.1105 -2.4166 12 6 2.1493 -0.6804 -3.6449 13 6 1.5427 -0.0755 -4.9125 14 6 2.2438 -0.6372 -6.1225 15 1 3.0420 -1.3544 -5.9995 16 6 1.8664 -0.2358 -7.3863 17 7 0.8941 0.6371 -7.5360 18 14 2.7350 -0.9327 -8.8861 19 1 3.7840 -1.8892 -8.4505 20 1 1.7498 -1.6357 -9.7465 21 1 3.3621 0.1733 -9.6533 22 1 -0.3633 0.5142 0.8898 23 1 -0.3634 0.5135 -0.8902 24 1 -0.3633 -1.0277 0.0005 25 1 1.8345 -2.5803 2.0257 26 1 3.9458 0.2867 1.2680 27 1 3.9375 -1.2864 2.1031 28 1 3.7122 -2.4538 -0.0597 29 1 5.1437 -1.3951 -0.0835 30 1 3.8172 -1.1701 -2.1738 31 1 3.8403 0.3530 -1.2534 32 1 0.3763 -0.3562 -2.4651 33 1 1.5587 0.9725 -2.3960 34 1 3.2102 -0.4347 -3.5963 35 1 2.0277 -1.7634 -3.6654 36 1 0.4819 -0.3215 -4.9609 37 1 1.6639 1.0076 -4.8922 38 1 0.6289 0.9199 -8.4252 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000384955981.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:28 Heat of formation + Delta-G solvation = -65.454296 kcal Electronic energy + Delta-G solvation = -16400.802058 eV Core-core repulsion = 13856.394540 eV Total energy + Delta-G solvation = -2544.407518 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.59307 -36.29376 -33.91857 -32.98189 -31.98578 -30.15358 -26.99989 -26.22686 -24.19902 -22.22962 -21.25946 -19.84305 -19.40126 -16.88234 -16.30193 -15.60546 -15.04554 -14.99077 -14.50841 -14.22530 -13.75546 -13.43364 -13.03875 -12.48970 -12.29988 -11.98583 -11.80452 -11.58384 -11.39975 -11.17682 -11.13188 -10.83283 -10.72058 -10.48553 -10.28258 -10.02723 -9.76039 -9.52159 -9.26847 -8.97499 -8.30447 -7.85201 -5.95723 -3.97538 3.33920 3.41127 3.45782 4.10060 4.33502 4.50671 4.73080 4.76886 4.96511 5.20318 5.39631 5.40194 5.48676 5.52427 5.64449 5.69474 5.80880 5.84446 5.89434 5.98871 6.05265 6.09123 6.28201 6.35824 6.40186 6.52092 6.78213 6.87521 7.16995 7.50589 7.54099 7.73297 7.74730 7.88820 8.05108 8.48627 9.09878 9.66292 11.15831 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.046656 B = 0.005290 C = 0.004952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 599.992710 B = 5291.414811 C = 5652.485106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.089 3.911 3 H 0.045 0.955 4 C 0.115 3.885 5 H 0.051 0.949 6 O -0.543 6.543 7 C -0.154 4.154 8 C -0.112 4.112 9 C 0.048 3.952 10 N -0.522 5.522 11 C 0.056 3.944 12 C -0.111 4.111 13 C 0.022 3.978 14 C -0.517 4.517 15 H 0.055 0.945 16 C 0.055 3.945 17 N -0.897 5.897 18 Si 0.891 3.109 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.285 1.285 22 H 0.051 0.949 23 H 0.059 0.941 24 H 0.072 0.928 25 H 0.366 0.634 26 H 0.065 0.935 27 H 0.062 0.938 28 H 0.076 0.924 29 H 0.061 0.939 30 H 0.089 0.911 31 H 0.025 0.975 32 H 0.073 0.927 33 H 0.025 0.975 34 H 0.049 0.951 35 H 0.056 0.944 36 H 0.016 0.984 37 H 0.013 0.987 38 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.458 -1.676 18.835 19.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.020 4.020 3 H 0.062 0.938 4 C 0.055 3.945 5 H 0.069 0.931 6 O -0.346 6.346 7 C -0.192 4.192 8 C -0.150 4.150 9 C -0.079 4.079 10 N -0.247 5.247 11 C -0.071 4.071 12 C -0.149 4.149 13 C -0.016 4.016 14 C -0.555 4.555 15 H 0.073 0.927 16 C -0.145 4.145 17 N -0.536 5.536 18 Si 0.719 3.281 19 H -0.197 1.197 20 H -0.210 1.210 21 H -0.211 1.211 22 H 0.070 0.930 23 H 0.078 0.922 24 H 0.091 0.909 25 H 0.211 0.789 26 H 0.084 0.916 27 H 0.081 0.919 28 H 0.094 0.906 29 H 0.079 0.921 30 H 0.107 0.893 31 H 0.044 0.956 32 H 0.092 0.908 33 H 0.043 0.957 34 H 0.067 0.933 35 H 0.075 0.925 36 H 0.035 0.965 37 H 0.031 0.969 38 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 2.928 -1.865 18.165 18.494 hybrid contribution 1.003 0.500 -0.405 1.192 sum 3.931 -1.365 17.759 18.240 Atomic orbital electron populations 1.21813 0.93954 1.03212 1.01178 1.21602 0.96203 0.94161 0.90055 0.93774 1.21809 0.92025 0.84018 0.96627 0.93101 1.86693 1.75451 1.23603 1.48885 1.22334 0.96786 1.01307 0.98811 1.21518 0.99033 1.00891 0.93521 1.22209 0.88096 0.98423 0.99215 1.61984 1.06480 1.54730 1.01542 1.22319 0.99806 0.95979 0.89023 1.21791 0.98645 1.00380 0.94092 1.19077 0.96202 0.95821 0.90498 1.21296 1.18296 1.24811 0.91100 0.92673 1.25028 0.95200 0.95200 0.99104 1.69981 1.28847 1.32284 1.22525 0.86549 0.79615 0.78902 0.83024 1.19743 1.21011 1.21091 0.93026 0.92226 0.90891 0.78911 0.91648 0.91912 0.90570 0.92070 0.89259 0.95635 0.90834 0.95696 0.93278 0.92537 0.96546 0.96870 0.93131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.92 8.63 37.16 0.32 -1.60 16 2 C 0.09 1.22 2.19 -67.72 -0.15 1.07 16 3 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 4 C 0.11 1.30 3.24 -26.65 -0.09 1.21 16 5 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 6 O -0.54 -6.49 11.95 -35.23 -0.42 -6.91 16 7 C -0.15 -1.58 5.71 -26.57 -0.15 -1.73 16 8 C -0.11 -1.36 5.94 -26.61 -0.16 -1.51 16 9 C 0.05 0.73 4.85 -3.83 -0.02 0.71 16 10 N -0.52 -8.51 4.52 -226.69 -1.03 -9.53 16 11 C 0.06 1.03 4.36 -3.82 -0.02 1.02 16 12 C -0.11 -2.41 4.40 -26.74 -0.12 -2.53 16 13 C 0.02 0.58 4.97 -27.88 -0.14 0.44 16 14 C -0.52 -15.02 9.11 -34.44 -0.31 -15.34 16 15 H 0.06 1.56 7.74 -52.48 -0.41 1.16 16 16 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 17 N -0.90 -27.50 13.29 55.43 0.74 -26.77 16 18 Si 0.89 22.07 29.54 -169.99 -5.02 17.05 16 19 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 20 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 21 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 22 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 23 H 0.06 0.83 6.55 -51.93 -0.34 0.49 16 24 H 0.07 1.07 7.66 -51.93 -0.40 0.67 16 25 H 0.37 2.74 9.08 45.56 0.41 3.15 16 26 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 27 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.08 1.00 7.80 -51.93 -0.40 0.59 16 29 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.09 1.46 5.81 -51.93 -0.30 1.16 16 31 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.07 1.39 6.84 -51.93 -0.36 1.04 16 33 H 0.02 0.47 8.08 -51.93 -0.42 0.05 16 34 H 0.05 1.03 6.21 -51.93 -0.32 0.71 16 35 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 36 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.01 0.37 8.14 -51.93 -0.42 -0.06 16 38 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 294.99 15.07 4.45 4.45 Total: -1.00 -31.80 294.99 -8.11 -39.90 By element: Atomic # 1 Polarization: 4.44 SS G_CDS: -5.90 Total: -1.46 kcal Atomic # 6 Polarization: -15.81 SS G_CDS: -0.93 Total: -16.73 kcal Atomic # 7 Polarization: -36.01 SS G_CDS: -0.29 Total: -36.30 kcal Atomic # 8 Polarization: -6.49 SS G_CDS: -0.42 Total: -6.91 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -31.80 -8.11 -39.90 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000384955981.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.550 kcal (2) G-P(sol) polarization free energy of solvation -31.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds