Wall clock time and date at job start Mon Mar 30 2020 03:23:27
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53006 * 1
3 3 H 1.09004 * 109.45853 * 2 1
4 4 C 1.53030 * 109.46234 * 119.97510 * 2 1 3
5 5 H 1.08992 * 109.50788 * 299.16927 * 4 2 1
6 6 O 1.42903 * 109.50442 * 59.24926 * 4 2 1
7 7 C 1.53119 * 109.31050 * 179.20147 * 4 2 1
8 8 C 1.53199 * 109.11845 * 302.36937 * 7 4 2
9 9 C 1.53036 * 109.30205 * 57.62934 * 8 7 4
10 10 N 1.46845 * 109.45270 * 240.02633 * 2 1 3
11 11 C 1.46904 * 111.00389 * 54.14962 * 10 2 1
12 12 C 1.52995 * 109.47407 * 169.99666 * 11 10 2
13 13 C 1.52995 * 109.47112 * 179.97438 * 12 11 10
14 14 C 1.50704 * 109.47341 * 180.02562 * 13 12 11
15 15 H 1.08004 * 119.99486 * 0.02562 * 14 13 12
16 16 C 1.37872 * 120.00396 * 180.02562 * 14 13 12
17 17 N 1.31515 * 119.99970 * 359.97438 * 16 14 13
18 18 Si 1.86804 * 120.00103 * 180.02562 * 16 14 13
19 19 H 1.48493 * 109.47015 * 359.97438 * 18 16 14
20 20 H 1.48499 * 109.47158 * 119.99819 * 18 16 14
21 21 H 1.48495 * 109.46780 * 239.99991 * 18 16 14
22 22 H 1.09001 * 109.47048 * 300.02258 * 1 2 3
23 23 H 1.09004 * 109.47160 * 60.02429 * 1 2 3
24 24 H 1.09003 * 109.46637 * 180.02562 * 1 2 3
25 25 H 0.96700 * 114.00311 * 179.97438 * 6 4 2
26 26 H 1.09002 * 109.51891 * 62.23914 * 7 4 2
27 27 H 1.09005 * 109.52613 * 182.41870 * 7 4 2
28 28 H 1.09000 * 109.49186 * 297.67366 * 8 7 4
29 29 H 1.09003 * 109.49015 * 177.57683 * 8 7 4
30 30 H 1.08995 * 109.45945 * 180.80556 * 9 8 7
31 31 H 1.09000 * 109.46099 * 60.83428 * 9 8 7
32 32 H 1.08999 * 109.46769 * 289.99965 * 11 10 2
33 33 H 1.08999 * 109.46724 * 49.99847 * 11 10 2
34 34 H 1.09001 * 109.47198 * 300.00417 * 12 11 10
35 35 H 1.09004 * 109.46772 * 59.99969 * 12 11 10
36 36 H 1.09001 * 109.47523 * 300.00332 * 13 12 11
37 37 H 1.09004 * 109.47234 * 60.00366 * 13 12 11
38 38 H 0.97002 * 119.99914 * 179.97438 * 17 16 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 1 1.8932 1.0278 0.0000
4 6 2.0399 -0.7209 1.2499
5 1 1.6891 -0.1986 2.1399
6 8 1.5495 -2.0631 1.2600
7 6 3.5710 -0.7363 1.2363
8 6 4.0546 -1.4191 -0.0470
9 6 3.4863 -0.6779 -1.2593
10 7 2.0191 -0.6918 -1.1994
11 6 1.4371 -0.1105 -2.4166
12 6 2.1493 -0.6804 -3.6449
13 6 1.5427 -0.0755 -4.9125
14 6 2.2438 -0.6372 -6.1225
15 1 3.0420 -1.3544 -5.9995
16 6 1.8664 -0.2358 -7.3863
17 7 0.8941 0.6371 -7.5360
18 14 2.7350 -0.9327 -8.8861
19 1 3.7840 -1.8892 -8.4505
20 1 1.7498 -1.6357 -9.7465
21 1 3.3621 0.1733 -9.6533
22 1 -0.3633 0.5142 0.8898
23 1 -0.3634 0.5135 -0.8902
24 1 -0.3633 -1.0277 0.0005
25 1 1.8345 -2.5803 2.0257
26 1 3.9458 0.2867 1.2680
27 1 3.9375 -1.2864 2.1031
28 1 3.7122 -2.4538 -0.0597
29 1 5.1437 -1.3951 -0.0835
30 1 3.8172 -1.1701 -2.1738
31 1 3.8403 0.3530 -1.2534
32 1 0.3763 -0.3562 -2.4651
33 1 1.5587 0.9725 -2.3960
34 1 3.2102 -0.4347 -3.5963
35 1 2.0277 -1.7634 -3.6654
36 1 0.4819 -0.3215 -4.9609
37 1 1.6639 1.0076 -4.8922
38 1 0.6289 0.9199 -8.4252
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000384955981.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:23:27
Heat of formation + Delta-G solvation = -88.342649 kcal
Electronic energy + Delta-G solvation = -16401.794572 eV
Core-core repulsion = 13856.394540 eV
Total energy + Delta-G solvation = -2545.400031 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 227.163 amu
Computer time = 0.40 seconds
Orbital eigenvalues (eV)
-40.67647 -37.47354 -35.69959 -34.25335 -33.53629 -31.65663 -28.44602 -27.63561
-25.68868 -23.87486 -22.36039 -21.42844 -20.56680 -18.51669 -17.75335 -16.84717
-16.45332 -16.31920 -16.10166 -15.49301 -15.14637 -14.69458 -14.19624 -14.10785
-13.70081 -13.52122 -13.15093 -13.02400 -12.76503 -12.61337 -12.54378 -12.39719
-12.26166 -11.88679 -11.69534 -11.49912 -11.28825 -11.20246 -10.89190 -10.58283
-10.54595 -9.14106 -8.21285 -6.32691 1.39056 1.39796 1.53443 2.40162
2.92723 3.11699 3.46231 3.82043 3.87249 4.03642 4.15582 4.24807
4.33051 4.37502 4.51225 4.54698 4.64933 4.73721 4.82473 4.83954
4.90497 4.97589 5.04336 5.05263 5.14342 5.17155 5.30811 5.35708
5.48000 5.49941 5.71494 5.83080 6.14198 6.26474 6.32238 6.83812
7.10566 7.36655 8.91074
Molecular weight = 227.16amu
Principal moments of inertia in cm(-1)
A = 0.046656 B = 0.005290 C = 0.004952
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 599.992710 B = 5291.414811 C = 5652.485106
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.140 4.140
2 C 0.079 3.921
3 H 0.048 0.952
4 C 0.117 3.883
5 H 0.077 0.923
6 O -0.565 6.565
7 C -0.149 4.149
8 C -0.107 4.107
9 C 0.044 3.956
10 N -0.530 5.530
11 C 0.068 3.932
12 C -0.094 4.094
13 C 0.026 3.974
14 C -0.542 4.542
15 H 0.058 0.942
16 C -0.001 4.001
17 N -0.934 5.934
18 Si 0.967 3.033
19 H -0.262 1.262
20 H -0.277 1.277
21 H -0.276 1.276
22 H 0.076 0.924
23 H 0.043 0.957
24 H 0.057 0.943
25 H 0.385 0.615
26 H 0.072 0.928
27 H 0.090 0.910
28 H 0.065 0.935
29 H 0.077 0.923
30 H 0.069 0.931
31 H 0.025 0.975
32 H 0.065 0.935
33 H 0.020 0.980
34 H 0.054 0.946
35 H 0.049 0.951
36 H -0.010 1.010
37 H -0.010 1.010
38 H 0.264 0.736
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 4.754 -2.220 20.167 20.838
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.197 4.197
2 C -0.030 4.030
3 H 0.066 0.934
4 C 0.058 3.942
5 H 0.095 0.905
6 O -0.372 6.372
7 C -0.187 4.187
8 C -0.144 4.144
9 C -0.084 4.084
10 N -0.255 5.255
11 C -0.060 4.060
12 C -0.131 4.131
13 C -0.011 4.011
14 C -0.580 4.580
15 H 0.077 0.923
16 C -0.199 4.199
17 N -0.574 5.574
18 Si 0.792 3.208
19 H -0.186 1.186
20 H -0.202 1.202
21 H -0.202 1.202
22 H 0.095 0.905
23 H 0.062 0.938
24 H 0.076 0.924
25 H 0.234 0.766
26 H 0.090 0.910
27 H 0.109 0.891
28 H 0.084 0.916
29 H 0.096 0.904
30 H 0.087 0.913
31 H 0.043 0.957
32 H 0.083 0.917
33 H 0.039 0.961
34 H 0.073 0.927
35 H 0.068 0.932
36 H 0.009 0.991
37 H 0.008 0.992
38 H 0.073 0.927
Dipole moment (debyes) X Y Z Total
from point charges 4.234 -2.422 19.531 20.131
hybrid contribution 0.565 0.682 -0.790 1.187
sum 4.799 -1.740 18.742 19.424
Atomic orbital electron populations
1.21773 0.93935 1.02318 1.01705 1.21817 0.96371 0.94674 0.90109
0.93432 1.21805 0.92683 0.83889 0.95814 0.90508 1.86644 1.75920
1.24138 1.50503 1.22319 0.95900 1.01889 0.98565 1.21477 0.99871
0.99932 0.93158 1.22268 0.87384 0.98657 1.00086 1.61985 1.07292
1.54959 1.01286 1.22029 0.99080 0.95517 0.89340 1.21529 0.98855
0.99489 0.93274 1.18970 0.94873 0.94545 0.92737 1.21699 1.18764
1.25244 0.92326 0.92332 1.26006 0.95862 0.95352 1.02652 1.70110
1.30241 1.33434 1.23663 0.85363 0.78569 0.78409 0.78494 1.18627
1.20245 1.20172 0.90468 0.93761 0.92396 0.76621 0.90972 0.89122
0.91608 0.90421 0.91276 0.95677 0.91686 0.96138 0.92710 0.93250
0.99138 0.99166 0.92723
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -3.62 8.63 71.98 0.62 -3.00 16
2 C 0.08 2.06 2.19 44.94 0.10 2.16 16
3 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16
4 C 0.12 2.31 3.24 30.64 0.10 2.41 16
5 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16
6 O -0.57 -12.16 11.95 -148.98 -1.78 -13.94 16
7 C -0.15 -2.53 5.71 30.70 0.18 -2.36 16
8 C -0.11 -2.36 5.94 30.67 0.18 -2.18 16
9 C 0.04 1.29 4.85 86.32 0.42 1.71 16
10 N -0.53 -17.12 4.52 -871.11 -3.94 -21.06 16
11 C 0.07 2.60 4.36 86.30 0.38 2.98 16
12 C -0.09 -4.18 4.40 30.59 0.13 -4.05 16
13 C 0.03 1.47 4.97 29.85 0.15 1.62 16
14 C -0.54 -32.16 9.11 25.60 0.23 -31.92 16
15 H 0.06 3.35 7.74 -2.91 -0.02 3.32 16
16 C 0.00 -0.07 5.46 84.65 0.46 0.39 16
17 N -0.93 -58.34 13.29 21.45 0.28 -58.06 16
18 Si 0.97 45.37 29.54 68.60 2.03 47.40 16
19 H -0.26 -11.76 7.11 99.48 0.71 -11.05 16
20 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16
21 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16
22 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16
23 H 0.04 1.25 6.55 -2.39 -0.02 1.23 16
24 H 0.06 1.67 7.66 -2.39 -0.02 1.65 16
25 H 0.39 4.63 9.08 -74.06 -0.67 3.96 16
26 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16
27 H 0.09 1.09 8.14 -2.38 -0.02 1.07 16
28 H 0.07 1.60 7.80 -2.39 -0.02 1.59 16
29 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16
30 H 0.07 2.27 5.81 -2.39 -0.01 2.25 16
31 H 0.03 0.73 8.14 -2.39 -0.02 0.71 16
32 H 0.06 2.57 6.84 -2.39 -0.02 2.55 16
33 H 0.02 0.79 8.08 -2.39 -0.02 0.77 16
34 H 0.05 2.36 6.21 -2.39 -0.01 2.35 16
35 H 0.05 2.25 8.14 -2.38 -0.02 2.23 16
36 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16
37 H -0.01 -0.60 8.14 -2.38 -0.02 -0.62 16
38 H 0.26 15.36 8.31 -92.71 -0.77 14.59 16
Total: -1.00 -69.02 294.99 -0.12 -69.14
By element:
Atomic # 1 Polarization: 8.43 SS G_CDS: 0.34 Total: 8.77 kcal
Atomic # 6 Polarization: -35.20 SS G_CDS: 2.95 Total: -32.25 kcal
Atomic # 7 Polarization: -75.47 SS G_CDS: -3.66 Total: -79.12 kcal
Atomic # 8 Polarization: -12.16 SS G_CDS: -1.78 Total: -13.94 kcal
Atomic # 14 Polarization: 45.37 SS G_CDS: 2.03 Total: 47.40 kcal
Total: -69.02 -0.12 -69.14 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000384955981.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -19.206 kcal
(2) G-P(sol) polarization free energy of solvation -69.021 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.227 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.115 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.137 kcal
(6) G-S(sol) free energy of system = (1) + (5) -88.343 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.41 seconds