Wall clock time and date at job start Mon Mar 30 2020 03:23:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09004 * 109.45853 * 2 1 4 4 C 1.53030 * 109.46234 * 119.97510 * 2 1 3 5 5 H 1.08992 * 109.50788 * 299.16927 * 4 2 1 6 6 O 1.42903 * 109.50442 * 59.24926 * 4 2 1 7 7 C 1.53119 * 109.31050 * 179.20147 * 4 2 1 8 8 C 1.53199 * 109.11845 * 302.36937 * 7 4 2 9 9 C 1.53036 * 109.30205 * 57.62934 * 8 7 4 10 10 N 1.46845 * 109.45270 * 240.02633 * 2 1 3 11 11 C 1.46904 * 111.00389 * 54.14962 * 10 2 1 12 12 C 1.52995 * 109.47407 * 169.99666 * 11 10 2 13 13 C 1.52995 * 109.47112 * 179.97438 * 12 11 10 14 14 C 1.50704 * 109.47341 * 180.02562 * 13 12 11 15 15 H 1.08004 * 119.99486 * 0.02562 * 14 13 12 16 16 C 1.37872 * 120.00396 * 180.02562 * 14 13 12 17 17 N 1.31515 * 119.99970 * 359.97438 * 16 14 13 18 18 Si 1.86804 * 120.00103 * 180.02562 * 16 14 13 19 19 H 1.48493 * 109.47015 * 359.97438 * 18 16 14 20 20 H 1.48499 * 109.47158 * 119.99819 * 18 16 14 21 21 H 1.48495 * 109.46780 * 239.99991 * 18 16 14 22 22 H 1.09001 * 109.47048 * 300.02258 * 1 2 3 23 23 H 1.09004 * 109.47160 * 60.02429 * 1 2 3 24 24 H 1.09003 * 109.46637 * 180.02562 * 1 2 3 25 25 H 0.96700 * 114.00311 * 179.97438 * 6 4 2 26 26 H 1.09002 * 109.51891 * 62.23914 * 7 4 2 27 27 H 1.09005 * 109.52613 * 182.41870 * 7 4 2 28 28 H 1.09000 * 109.49186 * 297.67366 * 8 7 4 29 29 H 1.09003 * 109.49015 * 177.57683 * 8 7 4 30 30 H 1.08995 * 109.45945 * 180.80556 * 9 8 7 31 31 H 1.09000 * 109.46099 * 60.83428 * 9 8 7 32 32 H 1.08999 * 109.46769 * 289.99965 * 11 10 2 33 33 H 1.08999 * 109.46724 * 49.99847 * 11 10 2 34 34 H 1.09001 * 109.47198 * 300.00417 * 12 11 10 35 35 H 1.09004 * 109.46772 * 59.99969 * 12 11 10 36 36 H 1.09001 * 109.47523 * 300.00332 * 13 12 11 37 37 H 1.09004 * 109.47234 * 60.00366 * 13 12 11 38 38 H 0.97002 * 119.99914 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0399 -0.7209 1.2499 5 1 1.6891 -0.1986 2.1399 6 8 1.5495 -2.0631 1.2600 7 6 3.5710 -0.7363 1.2363 8 6 4.0546 -1.4191 -0.0470 9 6 3.4863 -0.6779 -1.2593 10 7 2.0191 -0.6918 -1.1994 11 6 1.4371 -0.1105 -2.4166 12 6 2.1493 -0.6804 -3.6449 13 6 1.5427 -0.0755 -4.9125 14 6 2.2438 -0.6372 -6.1225 15 1 3.0420 -1.3544 -5.9995 16 6 1.8664 -0.2358 -7.3863 17 7 0.8941 0.6371 -7.5360 18 14 2.7350 -0.9327 -8.8861 19 1 3.7840 -1.8892 -8.4505 20 1 1.7498 -1.6357 -9.7465 21 1 3.3621 0.1733 -9.6533 22 1 -0.3633 0.5142 0.8898 23 1 -0.3634 0.5135 -0.8902 24 1 -0.3633 -1.0277 0.0005 25 1 1.8345 -2.5803 2.0257 26 1 3.9458 0.2867 1.2680 27 1 3.9375 -1.2864 2.1031 28 1 3.7122 -2.4538 -0.0597 29 1 5.1437 -1.3951 -0.0835 30 1 3.8172 -1.1701 -2.1738 31 1 3.8403 0.3530 -1.2534 32 1 0.3763 -0.3562 -2.4651 33 1 1.5587 0.9725 -2.3960 34 1 3.2102 -0.4347 -3.5963 35 1 2.0277 -1.7634 -3.6654 36 1 0.4819 -0.3215 -4.9609 37 1 1.6639 1.0076 -4.8922 38 1 0.6289 0.9199 -8.4252 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000384955981.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:27 Heat of formation + Delta-G solvation = -88.342649 kcal Electronic energy + Delta-G solvation = -16401.794572 eV Core-core repulsion = 13856.394540 eV Total energy + Delta-G solvation = -2545.400031 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.67647 -37.47354 -35.69959 -34.25335 -33.53629 -31.65663 -28.44602 -27.63561 -25.68868 -23.87486 -22.36039 -21.42844 -20.56680 -18.51669 -17.75335 -16.84717 -16.45332 -16.31920 -16.10166 -15.49301 -15.14637 -14.69458 -14.19624 -14.10785 -13.70081 -13.52122 -13.15093 -13.02400 -12.76503 -12.61337 -12.54378 -12.39719 -12.26166 -11.88679 -11.69534 -11.49912 -11.28825 -11.20246 -10.89190 -10.58283 -10.54595 -9.14106 -8.21285 -6.32691 1.39056 1.39796 1.53443 2.40162 2.92723 3.11699 3.46231 3.82043 3.87249 4.03642 4.15582 4.24807 4.33051 4.37502 4.51225 4.54698 4.64933 4.73721 4.82473 4.83954 4.90497 4.97589 5.04336 5.05263 5.14342 5.17155 5.30811 5.35708 5.48000 5.49941 5.71494 5.83080 6.14198 6.26474 6.32238 6.83812 7.10566 7.36655 8.91074 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.046656 B = 0.005290 C = 0.004952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 599.992710 B = 5291.414811 C = 5652.485106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.079 3.921 3 H 0.048 0.952 4 C 0.117 3.883 5 H 0.077 0.923 6 O -0.565 6.565 7 C -0.149 4.149 8 C -0.107 4.107 9 C 0.044 3.956 10 N -0.530 5.530 11 C 0.068 3.932 12 C -0.094 4.094 13 C 0.026 3.974 14 C -0.542 4.542 15 H 0.058 0.942 16 C -0.001 4.001 17 N -0.934 5.934 18 Si 0.967 3.033 19 H -0.262 1.262 20 H -0.277 1.277 21 H -0.276 1.276 22 H 0.076 0.924 23 H 0.043 0.957 24 H 0.057 0.943 25 H 0.385 0.615 26 H 0.072 0.928 27 H 0.090 0.910 28 H 0.065 0.935 29 H 0.077 0.923 30 H 0.069 0.931 31 H 0.025 0.975 32 H 0.065 0.935 33 H 0.020 0.980 34 H 0.054 0.946 35 H 0.049 0.951 36 H -0.010 1.010 37 H -0.010 1.010 38 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.754 -2.220 20.167 20.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.030 4.030 3 H 0.066 0.934 4 C 0.058 3.942 5 H 0.095 0.905 6 O -0.372 6.372 7 C -0.187 4.187 8 C -0.144 4.144 9 C -0.084 4.084 10 N -0.255 5.255 11 C -0.060 4.060 12 C -0.131 4.131 13 C -0.011 4.011 14 C -0.580 4.580 15 H 0.077 0.923 16 C -0.199 4.199 17 N -0.574 5.574 18 Si 0.792 3.208 19 H -0.186 1.186 20 H -0.202 1.202 21 H -0.202 1.202 22 H 0.095 0.905 23 H 0.062 0.938 24 H 0.076 0.924 25 H 0.234 0.766 26 H 0.090 0.910 27 H 0.109 0.891 28 H 0.084 0.916 29 H 0.096 0.904 30 H 0.087 0.913 31 H 0.043 0.957 32 H 0.083 0.917 33 H 0.039 0.961 34 H 0.073 0.927 35 H 0.068 0.932 36 H 0.009 0.991 37 H 0.008 0.992 38 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 4.234 -2.422 19.531 20.131 hybrid contribution 0.565 0.682 -0.790 1.187 sum 4.799 -1.740 18.742 19.424 Atomic orbital electron populations 1.21773 0.93935 1.02318 1.01705 1.21817 0.96371 0.94674 0.90109 0.93432 1.21805 0.92683 0.83889 0.95814 0.90508 1.86644 1.75920 1.24138 1.50503 1.22319 0.95900 1.01889 0.98565 1.21477 0.99871 0.99932 0.93158 1.22268 0.87384 0.98657 1.00086 1.61985 1.07292 1.54959 1.01286 1.22029 0.99080 0.95517 0.89340 1.21529 0.98855 0.99489 0.93274 1.18970 0.94873 0.94545 0.92737 1.21699 1.18764 1.25244 0.92326 0.92332 1.26006 0.95862 0.95352 1.02652 1.70110 1.30241 1.33434 1.23663 0.85363 0.78569 0.78409 0.78494 1.18627 1.20245 1.20172 0.90468 0.93761 0.92396 0.76621 0.90972 0.89122 0.91608 0.90421 0.91276 0.95677 0.91686 0.96138 0.92710 0.93250 0.99138 0.99166 0.92723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.62 8.63 71.98 0.62 -3.00 16 2 C 0.08 2.06 2.19 44.94 0.10 2.16 16 3 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 4 C 0.12 2.31 3.24 30.64 0.10 2.41 16 5 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 6 O -0.57 -12.16 11.95 -148.98 -1.78 -13.94 16 7 C -0.15 -2.53 5.71 30.70 0.18 -2.36 16 8 C -0.11 -2.36 5.94 30.67 0.18 -2.18 16 9 C 0.04 1.29 4.85 86.32 0.42 1.71 16 10 N -0.53 -17.12 4.52 -871.11 -3.94 -21.06 16 11 C 0.07 2.60 4.36 86.30 0.38 2.98 16 12 C -0.09 -4.18 4.40 30.59 0.13 -4.05 16 13 C 0.03 1.47 4.97 29.85 0.15 1.62 16 14 C -0.54 -32.16 9.11 25.60 0.23 -31.92 16 15 H 0.06 3.35 7.74 -2.91 -0.02 3.32 16 16 C 0.00 -0.07 5.46 84.65 0.46 0.39 16 17 N -0.93 -58.34 13.29 21.45 0.28 -58.06 16 18 Si 0.97 45.37 29.54 68.60 2.03 47.40 16 19 H -0.26 -11.76 7.11 99.48 0.71 -11.05 16 20 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 21 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 22 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 23 H 0.04 1.25 6.55 -2.39 -0.02 1.23 16 24 H 0.06 1.67 7.66 -2.39 -0.02 1.65 16 25 H 0.39 4.63 9.08 -74.06 -0.67 3.96 16 26 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 27 H 0.09 1.09 8.14 -2.38 -0.02 1.07 16 28 H 0.07 1.60 7.80 -2.39 -0.02 1.59 16 29 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 30 H 0.07 2.27 5.81 -2.39 -0.01 2.25 16 31 H 0.03 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.06 2.57 6.84 -2.39 -0.02 2.55 16 33 H 0.02 0.79 8.08 -2.39 -0.02 0.77 16 34 H 0.05 2.36 6.21 -2.39 -0.01 2.35 16 35 H 0.05 2.25 8.14 -2.38 -0.02 2.23 16 36 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 37 H -0.01 -0.60 8.14 -2.38 -0.02 -0.62 16 38 H 0.26 15.36 8.31 -92.71 -0.77 14.59 16 Total: -1.00 -69.02 294.99 -0.12 -69.14 By element: Atomic # 1 Polarization: 8.43 SS G_CDS: 0.34 Total: 8.77 kcal Atomic # 6 Polarization: -35.20 SS G_CDS: 2.95 Total: -32.25 kcal Atomic # 7 Polarization: -75.47 SS G_CDS: -3.66 Total: -79.12 kcal Atomic # 8 Polarization: -12.16 SS G_CDS: -1.78 Total: -13.94 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 2.03 Total: 47.40 kcal Total: -69.02 -0.12 -69.14 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000384955981.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.206 kcal (2) G-P(sol) polarization free energy of solvation -69.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds