Wall clock time and date at job start Mon Mar 30 2020 03:27:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 110.33514 * 2 1 4 4 O 1.44431 * 110.37266 * 237.75201 * 2 1 3 5 5 C 1.44423 * 105.27307 * 200.66011 * 4 2 1 6 6 C 1.54475 * 104.80437 * 40.50912 * 5 4 2 7 7 C 1.54476 * 110.37136 * 122.36986 * 2 1 3 8 8 H 1.09000 * 110.51694 * 261.45440 * 7 2 1 9 9 N 1.46907 * 110.51115 * 24.16631 * 7 2 1 10 10 C 1.46898 * 110.99948 * 195.82221 * 9 7 2 11 11 C 1.52995 * 109.47216 * 179.97438 * 10 9 7 12 12 C 1.52999 * 109.47311 * 179.97438 * 11 10 9 13 13 C 1.52995 * 109.47311 * 179.97438 * 12 11 10 14 14 C 1.50697 * 109.47377 * 180.02562 * 13 12 11 15 15 H 1.08002 * 120.00020 * 359.97438 * 14 13 12 16 16 C 1.37883 * 120.00207 * 179.97438 * 14 13 12 17 17 N 1.31515 * 120.00071 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 120.00096 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.46923 * 0.02562 * 18 16 14 20 20 H 1.48504 * 109.46892 * 120.00271 * 18 16 14 21 21 H 1.48497 * 109.47381 * 240.00328 * 18 16 14 22 22 H 1.08996 * 109.47193 * 175.81298 * 1 2 3 23 23 H 1.08999 * 109.46677 * 295.81311 * 1 2 3 24 24 H 1.09004 * 109.46530 * 55.81245 * 1 2 3 25 25 H 1.09006 * 110.36814 * 159.34261 * 5 4 2 26 26 H 1.08996 * 110.37296 * 281.67637 * 5 4 2 27 27 H 1.09006 * 110.51002 * 94.67194 * 6 5 4 28 28 H 1.09010 * 110.51178 * 217.37185 * 6 5 4 29 29 H 1.00901 * 110.99707 * 319.77300 * 9 7 2 30 30 H 1.09008 * 109.47113 * 300.00015 * 10 9 7 31 31 H 1.09003 * 109.47337 * 59.99374 * 10 9 7 32 32 H 1.08999 * 109.47003 * 300.00127 * 11 10 9 33 33 H 1.09004 * 109.46933 * 59.99877 * 11 10 9 34 34 H 1.08999 * 109.47282 * 300.00068 * 12 11 10 35 35 H 1.09004 * 109.47132 * 60.00110 * 12 11 10 36 36 H 1.09008 * 109.47224 * 300.00220 * 13 12 11 37 37 H 1.09003 * 109.47347 * 59.99652 * 13 12 11 38 38 H 0.96996 * 120.00218 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9088 1.0220 0.0000 4 8 2.0328 -0.7225 -1.1451 5 6 3.3873 -1.0863 -0.8006 6 6 3.3177 -1.5064 0.6843 7 6 2.0678 -0.7753 1.2231 8 1 2.3429 -0.0861 2.0215 9 7 1.0701 -1.7434 1.6982 10 6 1.3947 -2.2124 3.0519 11 6 0.3355 -3.2162 3.5115 12 6 0.6739 -3.7052 4.9212 13 6 -0.3857 -4.7084 5.3811 14 6 -0.0528 -5.1897 6.7698 15 1 0.8270 -4.8175 7.2739 16 6 -0.8712 -6.1051 7.3970 17 7 -1.9421 -6.5587 6.7831 18 14 -0.4580 -6.7021 9.1182 19 1 0.7895 -6.0448 9.5839 20 1 -1.5707 -6.3613 10.0407 21 1 -0.2647 -8.1743 9.0984 22 1 -0.3633 -1.0249 -0.0750 23 1 -0.3633 0.4475 0.9251 24 1 -0.3632 0.5775 -0.8501 25 1 3.7241 -1.9209 -1.4158 26 1 4.0525 -0.2315 -0.9223 27 1 3.1955 -2.5862 0.7704 28 1 4.2109 -1.1786 1.2162 29 1 0.1411 -1.3511 1.6645 30 1 2.3729 -2.6935 3.0449 31 1 1.4120 -1.3640 3.7360 32 1 -0.6424 -2.7347 3.5186 33 1 0.3178 -4.0646 2.8275 34 1 1.6517 -4.1867 4.9138 35 1 0.6918 -2.8569 5.6056 36 1 -1.3634 -4.2265 5.3887 37 1 -0.4042 -5.5568 4.6969 38 1 -2.5177 -7.2030 7.2242 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385344125.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:08 Heat of formation + Delta-G solvation = -67.340045 kcal Electronic energy + Delta-G solvation = -15630.845850 eV Core-core repulsion = 13086.356560 eV Total energy + Delta-G solvation = -2544.489290 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.88682 -36.33343 -34.17978 -32.39516 -31.70718 -30.42948 -27.74823 -25.69534 -24.15543 -22.27248 -21.38472 -20.36579 -19.77482 -16.72793 -16.34914 -16.00643 -15.72763 -15.58070 -14.57432 -14.44656 -14.06225 -13.11742 -12.87500 -12.54572 -12.47914 -12.34084 -12.11449 -11.60182 -11.45568 -11.25589 -11.16782 -10.96567 -10.90236 -10.54523 -10.45038 -10.40957 -9.88243 -9.62049 -9.24082 -8.97700 -8.41056 -8.31670 -5.96737 -3.98925 3.32440 3.39698 3.43942 3.69630 4.11460 4.42009 4.48783 4.59027 4.87489 4.95251 5.11779 5.24692 5.29521 5.37787 5.38746 5.43574 5.52691 5.64531 5.65043 5.75197 5.90201 5.98781 6.04194 6.16047 6.26163 6.52101 6.68430 6.83504 6.97460 7.06062 7.24396 7.40612 7.72608 7.88282 8.04483 8.47309 9.08835 9.64932 11.14665 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.061604 B = 0.003812 C = 0.003706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 454.407048 B = 7343.344878 C = 7552.566599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.074 3.926 3 H 0.068 0.932 4 O -0.367 6.367 5 C 0.048 3.952 6 C -0.148 4.148 7 C 0.055 3.945 8 H 0.053 0.947 9 N -0.681 5.681 10 C 0.058 3.942 11 C -0.115 4.115 12 C -0.108 4.108 13 C 0.020 3.980 14 C -0.520 4.520 15 H 0.054 0.946 16 C 0.055 3.945 17 N -0.896 5.896 18 Si 0.891 3.109 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.284 1.284 22 H 0.081 0.919 23 H 0.068 0.932 24 H 0.063 0.937 25 H 0.091 0.909 26 H 0.054 0.946 27 H 0.089 0.911 28 H 0.072 0.928 29 H 0.344 0.656 30 H 0.068 0.932 31 H 0.025 0.975 32 H 0.053 0.947 33 H 0.065 0.935 34 H 0.047 0.953 35 H 0.044 0.956 36 H 0.014 0.986 37 H 0.016 0.984 38 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.434 13.641 -13.109 20.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.016 3.984 3 H 0.086 0.914 4 O -0.286 6.286 5 C -0.029 4.029 6 C -0.186 4.186 7 C -0.056 4.056 8 H 0.071 0.929 9 N -0.316 5.316 10 C -0.071 4.071 11 C -0.153 4.153 12 C -0.147 4.147 13 C -0.017 4.017 14 C -0.558 4.558 15 H 0.073 0.927 16 C -0.146 4.146 17 N -0.535 5.535 18 Si 0.719 3.281 19 H -0.198 1.198 20 H -0.210 1.210 21 H -0.210 1.210 22 H 0.099 0.901 23 H 0.087 0.913 24 H 0.083 0.917 25 H 0.109 0.891 26 H 0.073 0.927 27 H 0.108 0.892 28 H 0.091 0.909 29 H 0.166 0.834 30 H 0.087 0.913 31 H 0.044 0.956 32 H 0.072 0.928 33 H 0.084 0.916 34 H 0.065 0.935 35 H 0.063 0.937 36 H 0.033 0.967 37 H 0.034 0.966 38 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 8.462 12.949 -13.591 20.591 hybrid contribution 0.103 0.418 1.759 1.811 sum 8.565 13.367 -11.832 19.800 Atomic orbital electron populations 1.21818 0.93258 1.04026 1.02154 1.23052 0.95710 0.94571 0.85098 0.91403 1.89147 1.27109 1.74566 1.37773 1.23340 0.84561 0.99499 0.95472 1.23052 0.96974 1.02966 0.95645 1.22866 0.93302 0.92922 0.96462 0.92869 1.60720 1.05310 1.40108 1.25462 1.22125 1.00324 0.97541 0.87081 1.21636 0.97141 0.98166 0.98396 1.21586 1.00558 0.99428 0.93089 1.19102 0.93383 0.93424 0.95781 1.21330 1.09391 1.24262 1.00808 0.92737 1.25038 0.95126 0.96478 0.97911 1.69979 1.14465 1.31485 1.37613 0.86558 0.78307 0.78560 0.84702 1.19782 1.21045 1.21009 0.90057 0.91313 0.91750 0.89121 0.92731 0.89229 0.90926 0.83395 0.91320 0.95632 0.92774 0.91608 0.93463 0.93718 0.96721 0.96578 0.93104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.46 8.28 37.16 0.31 -1.15 16 2 C 0.07 0.76 3.89 -25.96 -0.10 0.66 16 3 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 4 O -0.37 -4.49 11.34 -35.23 -0.40 -4.89 16 5 C 0.05 0.47 7.63 37.93 0.29 0.76 16 6 C -0.15 -1.52 6.54 -25.17 -0.16 -1.68 16 7 C 0.06 0.60 3.31 -66.14 -0.22 0.38 16 8 H 0.05 0.55 7.97 -51.93 -0.41 0.14 16 9 N -0.68 -8.71 5.85 -105.07 -0.61 -9.32 16 10 C 0.06 0.83 5.53 -3.83 -0.02 0.80 16 11 C -0.12 -2.00 5.47 -26.73 -0.15 -2.14 16 12 C -0.11 -2.26 5.15 -26.73 -0.14 -2.40 16 13 C 0.02 0.53 4.97 -27.89 -0.14 0.39 16 14 C -0.52 -15.04 9.11 -34.44 -0.31 -15.36 16 15 H 0.05 1.53 7.74 -52.49 -0.41 1.13 16 16 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 17 N -0.90 -27.42 13.29 55.43 0.74 -26.68 16 18 Si 0.89 21.93 29.54 -169.99 -5.02 16.91 16 19 H -0.27 -6.57 7.11 56.52 0.40 -6.16 16 20 H -0.28 -6.91 7.11 56.52 0.40 -6.50 16 21 H -0.28 -6.91 7.11 56.52 0.40 -6.50 16 22 H 0.08 0.87 7.07 -51.93 -0.37 0.50 16 23 H 0.07 0.55 7.78 -51.93 -0.40 0.15 16 24 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.09 1.05 7.97 -51.93 -0.41 0.64 16 28 H 0.07 0.63 8.14 -51.92 -0.42 0.21 16 29 H 0.34 4.12 5.80 -39.29 -0.23 3.89 16 30 H 0.07 0.98 7.92 -51.92 -0.41 0.57 16 31 H 0.03 0.35 8.10 -51.93 -0.42 -0.07 16 32 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 34 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.01 0.40 8.14 -51.92 -0.42 -0.02 16 37 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 38 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 304.90 15.07 4.59 4.59 Total: -1.00 -31.20 304.90 -8.30 -39.50 By element: Atomic # 1 Polarization: 4.95 SS G_CDS: -6.85 Total: -1.90 kcal Atomic # 6 Polarization: -17.48 SS G_CDS: -0.74 Total: -18.22 kcal Atomic # 7 Polarization: -36.12 SS G_CDS: 0.12 Total: -36.00 kcal Atomic # 8 Polarization: -4.49 SS G_CDS: -0.40 Total: -4.89 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -31.20 -8.30 -39.50 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385344125.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.842 kcal (2) G-P(sol) polarization free energy of solvation -31.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds