Wall clock time and date at job start Mon Mar 30 2020 03:27:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 110.33514 * 2 1 4 4 O 1.44431 * 110.37266 * 237.75201 * 2 1 3 5 5 C 1.44423 * 105.27307 * 200.66011 * 4 2 1 6 6 C 1.54475 * 104.80437 * 40.50912 * 5 4 2 7 7 C 1.54476 * 110.37136 * 122.36986 * 2 1 3 8 8 H 1.09000 * 110.51694 * 261.45440 * 7 2 1 9 9 N 1.46907 * 110.51115 * 24.16631 * 7 2 1 10 10 C 1.46898 * 110.99948 * 195.82221 * 9 7 2 11 11 C 1.52995 * 109.47216 * 179.97438 * 10 9 7 12 12 C 1.52999 * 109.47311 * 179.97438 * 11 10 9 13 13 C 1.52995 * 109.47311 * 179.97438 * 12 11 10 14 14 C 1.50697 * 109.47377 * 180.02562 * 13 12 11 15 15 H 1.08002 * 120.00020 * 359.97438 * 14 13 12 16 16 C 1.37883 * 120.00207 * 179.97438 * 14 13 12 17 17 N 1.31515 * 120.00071 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 120.00096 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.46923 * 0.02562 * 18 16 14 20 20 H 1.48504 * 109.46892 * 120.00271 * 18 16 14 21 21 H 1.48497 * 109.47381 * 240.00328 * 18 16 14 22 22 H 1.08996 * 109.47193 * 175.81298 * 1 2 3 23 23 H 1.08999 * 109.46677 * 295.81311 * 1 2 3 24 24 H 1.09004 * 109.46530 * 55.81245 * 1 2 3 25 25 H 1.09006 * 110.36814 * 159.34261 * 5 4 2 26 26 H 1.08996 * 110.37296 * 281.67637 * 5 4 2 27 27 H 1.09006 * 110.51002 * 94.67194 * 6 5 4 28 28 H 1.09010 * 110.51178 * 217.37185 * 6 5 4 29 29 H 1.00901 * 110.99707 * 319.77300 * 9 7 2 30 30 H 1.09008 * 109.47113 * 300.00015 * 10 9 7 31 31 H 1.09003 * 109.47337 * 59.99374 * 10 9 7 32 32 H 1.08999 * 109.47003 * 300.00127 * 11 10 9 33 33 H 1.09004 * 109.46933 * 59.99877 * 11 10 9 34 34 H 1.08999 * 109.47282 * 300.00068 * 12 11 10 35 35 H 1.09004 * 109.47132 * 60.00110 * 12 11 10 36 36 H 1.09008 * 109.47224 * 300.00220 * 13 12 11 37 37 H 1.09003 * 109.47347 * 59.99652 * 13 12 11 38 38 H 0.96996 * 120.00218 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9088 1.0220 0.0000 4 8 2.0328 -0.7225 -1.1451 5 6 3.3873 -1.0863 -0.8006 6 6 3.3177 -1.5064 0.6843 7 6 2.0678 -0.7753 1.2231 8 1 2.3429 -0.0861 2.0215 9 7 1.0701 -1.7434 1.6982 10 6 1.3947 -2.2124 3.0519 11 6 0.3355 -3.2162 3.5115 12 6 0.6739 -3.7052 4.9212 13 6 -0.3857 -4.7084 5.3811 14 6 -0.0528 -5.1897 6.7698 15 1 0.8270 -4.8175 7.2739 16 6 -0.8712 -6.1051 7.3970 17 7 -1.9421 -6.5587 6.7831 18 14 -0.4580 -6.7021 9.1182 19 1 0.7895 -6.0448 9.5839 20 1 -1.5707 -6.3613 10.0407 21 1 -0.2647 -8.1743 9.0984 22 1 -0.3633 -1.0249 -0.0750 23 1 -0.3633 0.4475 0.9251 24 1 -0.3632 0.5775 -0.8501 25 1 3.7241 -1.9209 -1.4158 26 1 4.0525 -0.2315 -0.9223 27 1 3.1955 -2.5862 0.7704 28 1 4.2109 -1.1786 1.2162 29 1 0.1411 -1.3511 1.6645 30 1 2.3729 -2.6935 3.0449 31 1 1.4120 -1.3640 3.7360 32 1 -0.6424 -2.7347 3.5186 33 1 0.3178 -4.0646 2.8275 34 1 1.6517 -4.1867 4.9138 35 1 0.6918 -2.8569 5.6056 36 1 -1.3634 -4.2265 5.3887 37 1 -0.4042 -5.5568 4.6969 38 1 -2.5177 -7.2030 7.2242 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385344125.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:08 Heat of formation + Delta-G solvation = -87.653553 kcal Electronic energy + Delta-G solvation = -15631.726710 eV Core-core repulsion = 13086.356560 eV Total energy + Delta-G solvation = -2545.370150 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.70982 -37.56788 -35.84627 -34.17999 -32.49892 -31.72832 -29.31733 -26.73653 -25.75976 -23.25833 -22.76187 -21.80793 -20.88785 -18.45319 -17.53081 -17.17564 -16.62158 -16.50096 -16.40310 -15.88924 -15.09350 -14.61204 -14.30905 -13.79466 -13.57838 -13.45303 -13.26032 -13.11288 -12.86823 -12.72189 -12.32047 -12.24932 -12.12108 -12.02621 -11.85220 -11.72814 -11.38365 -11.29873 -10.99549 -10.63749 -10.56207 -9.38729 -8.20115 -6.31733 1.39658 1.40175 1.53682 2.40845 2.93740 3.12676 3.14823 3.61753 3.82241 4.11125 4.13220 4.21794 4.23968 4.35849 4.45475 4.55160 4.57206 4.66323 4.68306 4.83369 4.88542 4.93327 4.93962 5.00610 5.18399 5.22911 5.27873 5.29649 5.35233 5.54867 5.77421 5.86442 5.90515 6.11983 6.25486 6.45247 6.86113 7.37765 8.92045 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.061604 B = 0.003812 C = 0.003706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 454.407048 B = 7343.344878 C = 7552.566599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.072 3.928 3 H 0.088 0.912 4 O -0.394 6.394 5 C 0.046 3.954 6 C -0.148 4.148 7 C 0.052 3.948 8 H 0.065 0.935 9 N -0.691 5.691 10 C 0.071 3.929 11 C -0.106 4.106 12 C -0.096 4.096 13 C 0.021 3.979 14 C -0.544 4.544 15 H 0.060 0.940 16 C -0.003 4.003 17 N -0.935 5.935 18 Si 0.967 3.033 19 H -0.261 1.261 20 H -0.277 1.277 21 H -0.278 1.278 22 H 0.063 0.937 23 H 0.082 0.918 24 H 0.070 0.930 25 H 0.094 0.906 26 H 0.076 0.924 27 H 0.069 0.931 28 H 0.090 0.910 29 H 0.348 0.652 30 H 0.069 0.931 31 H 0.035 0.965 32 H 0.053 0.947 33 H 0.052 0.948 34 H 0.050 0.950 35 H 0.051 0.949 36 H -0.010 1.010 37 H -0.012 1.012 38 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.756 14.847 -12.526 21.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.014 3.986 3 H 0.105 0.895 4 O -0.314 6.314 5 C -0.031 4.031 6 C -0.186 4.186 7 C -0.058 4.058 8 H 0.083 0.917 9 N -0.326 5.326 10 C -0.058 4.058 11 C -0.144 4.144 12 C -0.134 4.134 13 C -0.016 4.016 14 C -0.582 4.582 15 H 0.078 0.922 16 C -0.201 4.201 17 N -0.575 5.575 18 Si 0.791 3.209 19 H -0.185 1.185 20 H -0.203 1.203 21 H -0.203 1.203 22 H 0.082 0.918 23 H 0.101 0.899 24 H 0.089 0.911 25 H 0.112 0.888 26 H 0.094 0.906 27 H 0.088 0.912 28 H 0.109 0.891 29 H 0.170 0.830 30 H 0.088 0.912 31 H 0.054 0.946 32 H 0.072 0.928 33 H 0.071 0.929 34 H 0.069 0.931 35 H 0.070 0.930 36 H 0.008 0.992 37 H 0.006 0.994 38 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 9.795 14.169 -13.019 21.592 hybrid contribution -0.333 0.040 1.528 1.564 sum 9.462 14.208 -11.491 20.578 Atomic orbital electron populations 1.21820 0.92992 1.03165 1.03212 1.23198 0.96058 0.95158 0.84193 0.89472 1.89121 1.28415 1.75047 1.38771 1.23484 0.83969 1.00558 0.95054 1.23056 0.97485 1.01689 0.96383 1.22968 0.92982 0.92835 0.97051 0.91679 1.60668 1.06167 1.41391 1.24383 1.21877 0.98855 0.96906 0.88150 1.21462 0.98375 0.98609 0.95930 1.21389 0.98624 0.98133 0.95264 1.19039 0.94057 0.93677 0.94804 1.21776 1.09753 1.24736 1.01957 0.92154 1.26032 0.94825 0.96534 1.02674 1.70113 1.15582 1.32104 1.39728 0.85371 0.78567 0.78074 0.78864 1.18492 1.20274 1.20342 0.91795 0.89917 0.91099 0.88756 0.90627 0.91181 0.89121 0.82967 0.91245 0.94646 0.92806 0.92914 0.93131 0.92983 0.99156 0.99357 0.92773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.69 8.28 71.98 0.60 -2.10 16 2 C 0.07 1.34 3.89 31.10 0.12 1.46 16 3 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 4 O -0.39 -9.09 11.34 -148.98 -1.69 -10.78 16 5 C 0.05 0.80 7.63 72.48 0.55 1.36 16 6 C -0.15 -2.77 6.54 31.61 0.21 -2.56 16 7 C 0.05 1.03 3.31 45.93 0.15 1.18 16 8 H 0.07 1.16 7.97 -2.39 -0.02 1.14 16 9 N -0.69 -16.80 5.85 -486.33 -2.84 -19.64 16 10 C 0.07 1.92 5.53 86.30 0.48 2.40 16 11 C -0.11 -3.64 5.47 30.59 0.17 -3.47 16 12 C -0.10 -4.00 5.15 30.59 0.16 -3.84 16 13 C 0.02 1.16 4.97 29.85 0.15 1.31 16 14 C -0.54 -31.75 9.11 25.60 0.23 -31.52 16 15 H 0.06 3.36 7.74 -2.91 -0.02 3.34 16 16 C 0.00 -0.19 5.46 84.66 0.46 0.27 16 17 N -0.93 -58.11 13.29 21.45 0.28 -57.83 16 18 Si 0.97 44.83 29.54 68.60 2.03 46.85 16 19 H -0.26 -11.49 7.11 99.48 0.71 -10.78 16 20 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 21 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 22 H 0.06 1.34 7.07 -2.39 -0.02 1.32 16 23 H 0.08 1.18 7.78 -2.39 -0.02 1.16 16 24 H 0.07 1.12 8.14 -2.38 -0.02 1.11 16 25 H 0.09 1.53 8.14 -2.38 -0.02 1.51 16 26 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 27 H 0.07 1.59 7.97 -2.38 -0.02 1.57 16 28 H 0.09 1.34 8.14 -2.38 -0.02 1.32 16 29 H 0.35 7.94 5.80 -89.69 -0.52 7.42 16 30 H 0.07 1.88 7.92 -2.38 -0.02 1.86 16 31 H 0.04 0.90 8.10 -2.39 -0.02 0.88 16 32 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 33 H 0.05 1.94 8.14 -2.38 -0.02 1.92 16 34 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 35 H 0.05 2.08 8.14 -2.38 -0.02 2.06 16 36 H -0.01 -0.58 8.14 -2.38 -0.02 -0.60 16 37 H -0.01 -0.71 8.14 -2.39 -0.02 -0.73 16 38 H 0.26 15.28 8.31 -92.71 -0.77 14.51 16 Total: -1.00 -66.89 304.90 1.53 -65.36 By element: Atomic # 1 Polarization: 11.07 SS G_CDS: 0.48 Total: 11.55 kcal Atomic # 6 Polarization: -38.78 SS G_CDS: 3.27 Total: -35.51 kcal Atomic # 7 Polarization: -74.91 SS G_CDS: -2.56 Total: -77.47 kcal Atomic # 8 Polarization: -9.09 SS G_CDS: -1.69 Total: -10.78 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.85 kcal Total: -66.89 1.53 -65.36 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385344125.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.297 kcal (2) G-P(sol) polarization free energy of solvation -66.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds